Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 8.6e-60 233.4 114 100.0
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 9.8e-40 166.8 103 80.6
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 4.1e-38 161.4 104 81.7
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 2.4e-30 135.6 117 59.8
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 7.3e-27 124.0 115 54.8
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 6.2e-26 120.9 113 54.9
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 1.9e-22 109.4 86 64.0
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 2.5e-19 99.0 93 52.7
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 4.8e-18 94.7 91 52.7
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 2.4e-17 92.4 80 52.5
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 1.5e-16 89.7 99 42.4
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 2.6e-16 89.0 79 51.9
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 3.4e-16 88.6 108 42.6
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 4.5e-16 88.2 113 42.5
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 7.6e-16 87.4 78 51.3
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 1.7e-15 86.3 95 45.3
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 2.2e-15 85.9 78 50.0
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 2.2e-15 85.9 80 47.5
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 1.1e-14 83.6 84 47.6
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.1e-14 83.6 84 47.6
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 1.1e-14 83.6 107 42.1
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 1.4e-14 83.2 79 46.8
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.4e-14 82.4 58 60.3
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 3.2e-14 82.0 58 60.3
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 7.1e-14 80.9 59 57.6
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 7.1e-14 80.9 84 46.4
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 7.1e-14 80.9 89 50.6
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 1.6e-13 79.7 76 53.9
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 2.1e-13 79.3 99 40.4
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 2.1e-13 79.3 117 42.7
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 2.1e-13 79.3 99 47.5
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 2.1e-13 79.3 102 40.2
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 2.1e-13 79.3 86 45.3
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 2.7e-13 79.0 67 55.2
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 6.0e-13 77.8 52 59.6
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 6.0e-13 77.8 52 59.6
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 1.8e-12 76.3 76 44.7
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 3.0e-12 75.5 113 36.3
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 3.0e-12 75.5 52 57.7
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 5.1e-12 74.7 101 37.6
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 8.7e-12 73.9 60 58.3
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 7.4e-11 70.9 64 51.6
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 7.4e-11 70.9 48 64.6
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 2.1e-10 69.3 80 42.5
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 2.8e-10 68.9 86 43.0
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 3.6e-10 68.6 100 35.0
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 6.2e-10 67.8 76 44.7
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 8.1e-10 67.4 98 37.8
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.8e-09 66.2 102 35.3
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 1.8e-09 66.2 92 38.0
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 4.0e-09 65.1 102 37.3
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 6.9e-09 64.3 76 38.2
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 6.9e-09 64.3 79 40.5
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 6.9e-09 64.3 51 52.9
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 9.0e-09 63.9 86 38.4
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 1.2e-08 63.5 69 39.1
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 1.5e-08 63.2 86 41.9
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 2.0e-08 62.8 68 44.1
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 2.6e-08 62.4 100 31.0
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 5.8e-08 61.2 95 33.7
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 7.6e-08 60.8 100 31.0
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 9.9e-08 60.5 101 32.7
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.3e-07 60.1 54 53.7
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 3.8e-07 58.5 43 55.8
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 3.8e-07 58.5 52 44.2
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 2.4e-06 55.8 64 39.1
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 9.3e-06 53.9 59 44.1


User provided reference genes

Program Settings