Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g023620 Medicago truncatula HOM05D006671 ORTHO05D008637 0.0e+00 1105.1 538 100.0
TPR.G26443 Trifolium pratense HOM05D006671 ORTHO05D008637 4.8e-286 987.3 538 88.8
Psat4g165440 Pisum sativum HOM05D006671 ORTHO05D008637 7.4e-279 963.4 538 86.6
Lj3g0013980 Lotus japonicus HOM05D006671 ORTHO05D008637 2.1e-257 892.1 552 79.7
Glyma.07G047100 Glycine max HOM05D006671 ORTHO05D008637 1.8e-256 889.0 545 79.6
Glyma.16G015100 Glycine max HOM05D006671 ORTHO05D008637 1.3e-251 872.8 548 78.3
Phvul.010G121800 Phaseolus vulgaris HOM05D006671 ORTHO05D008637 5.5e-250 867.5 545 77.1
Lalb_Chr10g0101031 Lupinus albus HOM05D006671 ORTHO05D008637 2.8e-246 855.1 546 76.9
arahy.Tifrunner.gnm1.ann1.NMV212 Arachis hypogaea HOM05D006671 ORTHO05D008637 1.3e-222 776.5 540 69.3
arahy.Tifrunner.gnm1.ann1.YS0GDU Arachis hypogaea HOM05D006671 ORTHO05D008637 1.9e-221 772.7 540 69.4
Thecc.06G048900 Theobroma cacao HOM05D006671 ORTHO05D008637 2.7e-196 689.1 545 62.9
CiPaw.03G010100 Carya illinoinensis HOM05D006671 ORTHO05D008637 3.3e-194 682.2 553 62.6
COL.COLO4_26801 Corchorus olitorius HOM05D006671 ORTHO05D008637 4.3e-194 681.8 544 63.1
MD09G1171100 Malus domestica HOM05D006671 ORTHO05D008637 1.1e-192 677.2 538 62.5
CSS0038482 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 1.3e-190 670.2 534 62.7
Duzib160G0342 Durio zibethinus HOM05D006671 ORTHO05D008637 1.7e-190 669.8 545 61.1
Manes.11G010600 Manihot esculenta HOM05D006671 ORTHO05D008637 3.2e-189 665.6 547 61.2
CANSAT56G3116 Cannabis sativa HOM05D006671 ORTHO05D008637 4.6e-188 661.8 541 60.8
Gohir.D13G119900 Gossypium hirsutum HOM05D006671 ORTHO05D008637 6.0e-188 661.4 542 60.3
RcHm_v2.0_Chr2g0148251 Rosa chinensis HOM05D006671 ORTHO05D008637 6.0e-188 661.4 536 63.1
Gorai.013G134300 Gossypium raimondii HOM05D006671 ORTHO05D008637 4.3e-186 655.2 546 59.7
Eucgr.I02172 Eucalyptus grandis HOM05D006671 ORTHO05D008637 6.9e-184 647.9 540 60.2
Potri.001G161100 Populus trichocarpa HOM05D006671 ORTHO05D008637 1.5e-183 646.7 543 60.2
Atru.chr1.4182 Acer truncatum HOM05D006671 ORTHO05D008637 4.5e-183 645.2 540 60.2
Prupe.3G029600 Prunus persica HOM05D006671 ORTHO05D008637 3.8e-182 642.1 538 59.7
vmacro18708 Vaccinium macrocarpon HOM05D006671 ORTHO05D008637 4.9e-182 641.7 543 60.2
FvH4_6g36250 Fragaria vesca HOM05D006671 ORTHO05D008637 9.3e-181 637.5 536 59.9
Ciclev10025368m.g Citrus clementina HOM05D006671 ORTHO05D008637 1.3e-179 633.6 540 59.4
FAN14G1234 Fragaria x ananassa HOM05D006671 ORTHO05D008637 3.0e-179 632.5 536 59.5
PGR119G0898 Punica granatum HOM05D006671 ORTHO05D008637 3.0e-179 632.5 543 58.0
Rhsim08G0246200 Rhododendron simsii HOM05D006671 ORTHO05D008637 2.1e-177 626.3 549 58.7
TAR623G0926 Trochodendron aralioides HOM05D006671 ORTHO05D008637 2.8e-177 625.9 539 57.1
Haze_14039 Corylus avellana HOM05D006671 ORTHO05D008637 1.4e-176 623.6 640 53.4
PGSC0003DMG402028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 9.0e-176 620.9 537 58.7
DCAR_007665 Daucus carota HOM05D006671 ORTHO05D008637 7.6e-175 617.8 560 55.2
Cc04_g00530 Coffea canephora HOM05D006671 ORTHO05D008637 1.0e-174 617.5 542 57.6
Sopen12g024210 Solanum pennellii HOM05D006671 ORTHO05D008637 1.3e-174 617.1 540 57.6
CAN.G390.42 Capsicum annuum HOM05D006671 ORTHO05D008637 1.1e-173 614.0 535 57.8
Thhalv10011378m.g Eutrema salsugineum HOM05D006671 ORTHO05D008637 9.3e-173 610.9 536 57.5
TWI59G0357 Tripterygium wilfordii HOM05D006671 ORTHO05D008637 1.2e-172 610.5 543 57.1
Nn8g41287 Nelumbo nucifera HOM05D006671 ORTHO05D008637 1.6e-172 610.1 538 55.2
Sp1g40250 Schrenkiella parvula HOM05D006671 ORTHO05D008637 1.6e-172 610.1 536 56.5
Solyc12g055740.2 Solanum lycopersicum HOM05D006671 ORTHO05D008637 3.5e-172 609.0 537 57.5
Cpa.g.sc229.10 Carica papaya HOM05D006671 ORTHO05D008637 7.9e-172 607.8 543 56.7
FAN09G2187 Fragaria x ananassa HOM05D006671 ORTHO05D008637 1.8e-171 606.7 536 58.2
AT1G53710 Arabidopsis thaliana HOM05D006671 ORTHO05D008637 2.3e-171 606.3 537 55.5
CARHR044010 Cardamine hirsuta HOM05D006671 ORTHO05D008637 3.0e-171 605.9 542 56.8
BcaB04g17063 Brassica carinata HOM05D006671 ORTHO05D008637 3.9e-171 605.5 535 57.0
Carub.0001s4299 Capsella rubella HOM05D006671 ORTHO05D008637 1.5e-170 603.6 536 55.6
BolC3t21495H Brassica oleracea HOM05D006671 ORTHO05D008637 4.3e-170 602.1 535 55.9
AL1G62410 Arabidopsis lyrata HOM05D006671 ORTHO05D008637 2.8e-169 599.4 539 54.9
PGSC0003DMG401028844 Solanum tuberosum HOM05D006671 ORTHO05D008637 6.2e-169 598.2 537 57.0
Aa31LG10G1550 Aethionema arabicum HOM05D006671 ORTHO05D008637 1.4e-168 597.0 535 55.3
A08p01430 Brassica napus HOM05D006671 ORTHO05D008637 2.4e-168 596.3 538 55.9
Ca_23471_v3 Cicer arietinum L. HOM05D006671 ORTHO05D008637 1.5e-167 593.6 476 66.6
Sc12g0010960 Simmondsia chinensis HOM05D006671 ORTHO05D008637 1.5e-167 593.6 536 56.2
BraA08t32194Z Brassica rapa HOM05D006671 ORTHO05D008637 2.0e-167 593.2 537 55.7
BcaC01g01410 Brassica carinata HOM05D006671 ORTHO05D008637 7.6e-167 591.3 533 56.1
Aqoxy2G04033 Aquilegia oxysepala HOM05D006671 ORTHO05D008637 1.7e-166 590.1 539 55.5
Actinidia24409 Actinidia chinensis HOM05D006671 ORTHO05D008637 2.2e-166 589.7 498 58.8
C03p91740 Brassica napus HOM05D006671 ORTHO05D008637 2.9e-166 589.3 533 55.9
Migut.D00903 Erythranthe guttata HOM05D006671 ORTHO05D008637 5.5e-165 585.1 540 54.3
SalBow7G2314 Salvia bowleyana HOM05D006671 ORTHO05D008637 1.2e-164 583.9 539 55.3
FAN14G2634 Fragaria x ananassa HOM05D006671 ORTHO05D008637 2.7e-164 582.8 536 57.1
PSO017G0187 Papaver somniferum HOM05D006671 ORTHO05D008637 2.3e-163 579.7 543 55.8
EL10Ac7g18235 Beta vulgaris HOM05D006671 ORTHO05D008637 2.5e-162 576.2 536 55.4
Sabra01G0131200 Salix brachista HOM05D006671 ORTHO05D008637 4.3e-162 575.5 584 53.1
GSVIVG01026409001 Vitis vinifera HOM05D006671 ORTHO05D008637 4.3e-162 575.5 761 43.0
Os03g0397300 Oryza sativa ssp. japonica HOM05D006671 ORTHO05D008637 5.7e-162 575.1 533 55.0
ECA234G0268 Erigeron canadensis HOM05D006671 ORTHO05D008637 1.6e-161 573.5 537 54.6
Lj5C27T5 Lonicera japonica HOM05D006671 ORTHO05D008637 8.2e-161 571.2 490 58.0
MSTRG.9549 Avicennia marina HOM05D006671 ORTHO05D008637 5.3e-160 568.5 537 55.3
MBI13_g05970_MAGBIO Magnolia biondii HOM05D006671 ORTHO05D008637 5.0e-158 562.0 517 56.3
SGA_v2.0_scaffold4G02101 Striga asiatica HOM05D006671 ORTHO05D008637 1.9e-157 560.1 540 54.6
Zm00001eb392730 Zea mays HOM05D006671 ORTHO05D008637 7.2e-157 558.1 535 54.0
HanXRQChr10g0311581 Helianthus annuus HOM05D006671 ORTHO05D008637 2.1e-156 556.6 534 53.2
HPP92_002242 Vanilla planifolia HOM05D006671 ORTHO05D008637 1.7e-153 547.0 537 53.4
Lsat_1_v5_gn_5_137600 Lactuca sativa HOM05D006671 ORTHO05D008637 3.3e-146 522.7 523 50.9
Ah.08g217540 Amaranthus hybridus HOM05D006671 ORTHO05D008637 9.7e-146 521.2 541 52.7
CDE06G0010 Ceratophyllum demersum HOM05D006671 ORTHO05D008637 4.1e-144 515.8 478 54.4
Nitab4.5_0000357g0220 Nicotiana tabacum HOM05D006671 ORTHO05D008637 1.7e-142 510.4 530 52.1
PSO170G0973 Papaver somniferum HOM05D006671 ORTHO05D008637 1.9e-141 506.9 480 55.0
Dinv20369 Davidia involucrata HOM05D006671 ORTHO05D008637 1.0e-139 501.1 368 64.7
Actinidia33812 Actinidia chinensis HOM05D006671 ORTHO05D008637 3.0e-139 499.6 538 50.6
AUR62001377 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.9e-139 499.2 491 53.6
unitig_699.g19656 Utricularia gibba HOM05D006671 ORTHO05D001254 2.2e-137 493.4 537 48.6
AUR62044064 Chenopodium quinoa HOM05D006671 ORTHO05D008637 3.1e-136 489.6 479 54.7
Nitab4.5_0003469g0010 Nicotiana tabacum HOM05D006671 ORTHO05D008637 3.1e-136 489.6 548 49.5
VMungo0331G0057 Vigna mungo HOM05D006671 ORTHO05D008637 2.6e-130 469.9 298 74.5
SEGI_35568 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 2.3e-123 446.8 438 50.5
Peaxi162Scf00177g00616 Petunia axillaris HOM05D006671 ORTHO05D008637 2.8e-116 423.3 535 45.4
Pp3c21_8010 Physcomitrium patens HOM05D006671 ORTHO05D008637 1.2e-114 417.9 537 43.6
SMO347G0345 Selaginella moellendorffii HOM05D006671 ORTHO05D008637 3.2e-112 409.8 534 41.8
AagrBONN_evm.TU.Sc2ySwM_362.1979 Anthoceros agrestis HOM05D006671 ORTHO05D008637 1.9e-104 384.0 542 40.2
THA.LOC104822767 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 5.4e-104 382.5 358 54.7
QL03p047059 Quercus lobata HOM05D006671 ORTHO05D008637 7.8e-103 378.6 262 68.3
Hma1.2p1_1104F.1_g257490 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 3.0e-94 350.1 256 64.8
QL03p047068 Quercus lobata HOM05D006671 ORTHO05D008637 1.2e-84 318.2 271 61.3
Hma1.2p1_1104F.1_g257500 Hydrangea macrophylla HOM05D006671 ORTHO05D008637 1.1e-80 305.1 270 58.1
Mapoly0048s0109 Marchantia polymorpha HOM05D006671 ORTHO05D008637 7.1e-80 302.4 537 33.1
BcaNung02916 Brassica carinata HOM05D006671 ORTHO05D008637 7.8e-79 298.9 507 37.3
Oeu006761.2 Olea europaea HOM05D006671 ORTHO05D008637 2.1e-76 290.8 286 53.1
Gohir.A13G116750 Gossypium hirsutum HOM05D006671 ORTHO05D008637 5.3e-75 286.2 203 65.0
FAN02G1271 Fragaria x ananassa HOM05D006671 ORTHO05D008637 6.9e-75 285.8 318 50.6
Gohir.A13G116801 Gossypium hirsutum HOM05D006671 ORTHO05D008637 1.5e-74 284.6 260 57.3
MD17G1156100 Malus domestica HOM05D006671 ORTHO05D008637 2.3e-70 270.8 446 39.2
THA.LOC104803433 Tarenaya hassleriana HOM05D006671 ORTHO05D008637 2.6e-66 257.3 180 65.0
ATR0006G018 Amborella trichopoda HOM05D006671 ORTHO05D008637 3.5e-63 246.9 270 50.0
SEGI_04788 Sequoiadendron giganteum HOM05D006671 ORTHO05D008637 1.0e-62 245.4 268 50.0
Actinidia21851 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.6e-47 194.9 194 54.6
MCO09G741 Micromonas commoda HOM05D006671 ORTHO05D008637 9.0e-43 179.1 429 31.9
Hund05690 Selenicereus undatus HOM05D006671 ORTHO05D008637 1.2e-39 168.7 126 67.5
HPP92_002174 Vanilla planifolia HOM05D000872 ORTHO05D007886 1.4e-35 155.2 282 36.5
Actinidia21852 Actinidia chinensis HOM05D006671 ORTHO05D008637 1.9e-32 144.8 120 56.7
FAN05G4676 Fragaria x ananassa HOM05D006671 ORTHO05D008637 6.3e-28 129.8 112 59.8
Cfa022026 Carpinus fangiana HOM05D002393 ORTHO05D123579 4.7e-23 113.6 473 26.4
Lsat_1_v5_gn_2_122021 Lactuca sativa HOM05D006671 ORTHO05D008637 8.0e-15 86.3 112 43.8
BcaC09g48416 Brassica carinata HOM05D006671 ORTHO05D027459 1.8e-14 85.1 105 47.6
C01p50010 Brassica napus HOM05D010519 ORTHO05D027459 1.8e-14 85.1 105 47.6
BolC1t04958H Brassica oleracea HOM05D010519 ORTHO05D027459 1.8e-14 85.1 105 47.6
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 1.2e-13 82.4 333 22.5
Pp3c20_15640 Physcomitrium patens HOM05D008167 ORTHO05D010296 1.7e-09 68.6 372 21.8
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 2.2e-09 68.2 345 23.8
Lsat_1_v5_gn_2_91241 Lactuca sativa HOM05D006671 ORTHO05D011576 2.9e-09 67.8 83 45.8
Lsat_1_v5_gn_1_119700 Lactuca sativa HOM05D006671 ORTHO05D011576 2.5e-08 64.7 83 44.6
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 4.2e-08 63.9 334 20.4
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 9.5e-08 62.8 334 20.4
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 1.2e-07 62.4 330 21.8
CSS0027715 Camellia sinensis var. sinensis HOM05D006671 ORTHO05D008637 3.0e-06 57.8 34 70.6
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 3.0e-06 57.8 270 21.5
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 6.8e-06 56.6 312 23.1


User provided reference genes

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