Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 0.0e+00 1550.0 770 100.0
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 0.0e+00 1402.1 785 88.9
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 0.0e+00 1386.3 782 89.1
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 0.0e+00 1375.9 786 87.9
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1309.3 784 82.5
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 0.0e+00 1286.6 784 81.5
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 0.0e+00 1285.0 783 81.4
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 0.0e+00 1278.5 783 80.7
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 0.0e+00 1244.6 783 78.9
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1243.8 784 79.7
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 0.0e+00 1209.1 783 77.7
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1140.6 779 72.0
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1137.1 780 72.1
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1128.2 781 71.6
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1125.2 780 70.8
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1109.7 782 70.2
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1109.0 786 70.4
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1086.2 782 69.9
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1077.8 785 69.3
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1077.0 785 69.3
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1077.0 785 69.3
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1076.6 785 69.3
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 784 68.8
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 6.3e-311 1070.5 785 68.3
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 1.2e-309 1066.2 785 68.5
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.0e-309 1065.4 774 68.6
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 4.3e-304 1047.7 782 66.1
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 8.9e-302 1040.0 759 68.9
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 1.7e-300 1035.8 769 66.8
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 2.9e-300 1035.0 786 66.2
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.7e-298 1028.5 796 65.6
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 1.5e-296 1022.7 777 66.2
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 3.3e-296 1021.5 777 66.2
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 4.3e-296 1021.1 817 63.8
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 1.2e-295 1019.6 774 66.4
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.6e-295 1019.2 780 65.8
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 4.7e-295 1017.7 766 65.1
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 8.1e-295 1016.9 800 64.5
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 772 66.3
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 7.5e-293 1010.4 771 66.3
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 8.3e-292 1006.9 774 65.5
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 1.1e-291 1006.5 757 67.0
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 4.1e-291 1004.6 772 66.1
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 7.1e-291 1003.8 778 65.4
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.6e-290 1002.7 777 65.1
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 3.5e-290 1001.5 778 65.7
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 1.7e-289 999.2 767 65.3
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 8.6e-289 996.9 772 65.4
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 1.5e-288 996.1 781 64.8
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.6e-287 992.6 778 64.8
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 2.8e-287 991.9 772 65.2
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 2.4e-286 988.8 764 64.8
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 7.6e-285 983.8 758 65.7
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 1.3e-284 983.0 766 65.0
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 2.2e-284 982.2 761 65.0
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 8.4e-284 980.3 780 63.5
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 1.4e-283 979.5 770 64.2
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 4.2e-283 978.0 769 63.5
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 4.2e-283 978.0 768 63.8
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 5.4e-283 977.6 769 63.6
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 9.2e-283 976.9 762 65.1
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.1e-282 975.7 764 63.7
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.5e-282 974.9 764 63.6
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 1.0e-281 973.4 765 63.8
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 3.9e-281 971.5 764 63.7
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 3.9e-281 971.5 764 63.9
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.9e-280 969.1 778 62.7
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 5.6e-280 967.6 772 63.6
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.1e-279 965.7 762 64.6
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.6e-279 964.9 771 63.2
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 8.1e-279 963.8 763 62.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 8.1e-279 963.8 764 63.7
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 3.1e-278 961.8 763 62.3
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 3.4e-277 958.4 733 65.5
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 4.4e-277 958.0 779 63.5
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.4e-277 958.0 755 62.3
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.6e-277 957.2 758 63.2
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.7e-276 956.1 779 62.4
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.7e-276 956.1 763 62.0
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 2.2e-276 955.7 769 63.7
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 4.9e-276 954.5 777 63.1
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 3.2e-275 951.8 747 64.4
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 4.6e-274 948.0 764 63.0
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 1.7e-273 946.0 761 62.3
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.9e-273 944.9 765 62.6
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 4.3e-272 941.4 781 62.7
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 7.3e-272 940.6 807 58.7
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 2.1e-271 939.1 769 61.1
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 9.0e-270 933.7 761 61.2
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 2.6e-269 932.2 762 61.0
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 5.8e-269 931.0 758 61.5
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 7.6e-269 930.6 769 61.2
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 7.6e-269 930.6 769 61.4
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 3.8e-268 928.3 772 60.8
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 4.9e-268 927.9 757 61.2
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 8.4e-268 927.2 771 61.5
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 8.4e-268 927.2 771 61.7
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 4.2e-267 924.9 772 62.8
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 5.4e-267 924.5 755 60.9
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 5.4e-267 924.5 760 60.5
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 9.3e-267 923.7 769 60.9
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 2.3e-265 919.1 755 60.7
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 3.0e-265 918.7 758 61.1
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 3.9e-265 918.3 750 60.9
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 6.7e-265 917.5 769 59.7
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 1.1e-264 916.8 768 60.9
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 1.5e-264 916.4 760 60.3
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 1.4e-262 909.8 757 61.0
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 1.8e-262 909.4 775 59.6
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 9.0e-262 907.1 765 60.9
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 3.4e-261 905.2 774 60.2
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 3.8e-260 901.7 764 59.7
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 4.9e-260 901.4 754 60.3
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 7.9e-258 894.0 814 57.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.8e-255 885.6 777 57.3
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 1.3e-252 876.7 766 59.4
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.9e-251 872.8 769 57.2
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 1.9e-251 872.8 765 59.6
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 1.2e-250 870.2 780 56.9
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 1.6e-250 869.8 776 57.6
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.3e-249 866.7 776 58.1
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 4.3e-248 861.7 735 60.7
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.8e-247 859.0 758 59.0
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 6.5e-244 847.8 764 57.7
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 1.9e-243 846.3 776 57.3
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.5e-243 845.9 701 63.3
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 3.2e-243 845.5 771 56.7
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 3.6e-242 842.0 711 60.5
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 2.3e-241 839.3 776 58.0
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 8.8e-241 837.4 752 58.5
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.3e-239 833.6 770 55.8
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 5.0e-236 821.6 764 56.2
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 4.5e-229 798.5 767 55.5
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 5.9e-229 798.1 767 55.5
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 2.9e-228 795.8 878 50.8
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 1.6e-213 746.9 736 52.7
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 3.4e-208 729.2 695 56.1
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 3.7e-207 725.7 676 57.8
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-193 680.2 399 84.5
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 1.8e-193 680.2 399 84.5
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.2e-182 641.3 766 45.0
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 6.8e-169 598.6 732 44.0
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 2.2e-167 593.6 757 44.4
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-166 589.3 762 45.1
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 2.1e-165 587.0 753 44.5
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.3e-164 583.6 432 65.3
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.1e-163 581.3 728 43.1
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 4.6e-149 532.7 741 41.8
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 1.1e-145 521.5 397 64.7
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.0e-143 515.0 417 62.8
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 9.3e-134 481.9 552 47.5
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 3.6e-125 453.4 270 77.4
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 3.4e-120 436.8 463 51.6
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.6e-109 401.4 252 73.0
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.1e-105 385.6 449 47.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 7.5e-99 365.9 187 95.7
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 7.0e-97 359.4 745 34.0
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.3e-70 270.8 277 51.6
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 2.6e-67 261.2 764 28.4
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 9.5e-62 242.7 279 48.0
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 6.2e-45 186.8 147 59.9
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 3.0e-39 167.9 90 81.1
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 4.5e-35 154.1 144 59.0
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 3.3e-30 137.9 76 82.9
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 6.3e-21 107.1 145 39.3
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 9.0e-20 103.2 139 41.0
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 3.1e-12 78.2 103 38.8
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 1.0e-10 73.2 46 73.9
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 9.4e-09 66.6 39 71.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 3.0e-07 61.6 74 40.5
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 9.7e-06 56.6 48 58.3


User provided reference genes

Program Settings