Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g022040 Medicago truncatula HOM05D004368 ORTHO05D004990 5.6e-167 590.9 301 100.0
Psat4g167320 Pisum sativum HOM05D004368 ORTHO05D004990 8.6e-152 540.4 301 92.0
TPR.G29997 Trifolium pratense HOM05D004368 ORTHO05D004990 1.7e-147 526.2 301 91.0
Ca_23409_v3 Cicer arietinum L. HOM05D004368 ORTHO05D004990 6.0e-145 517.7 302 88.7
Glyma.07G041700 Glycine max HOM05D004368 ORTHO05D004990 1.9e-130 469.5 298 80.2
Lj3g0026199 Lotus japonicus HOM05D004368 ORTHO05D004990 2.4e-130 469.2 302 81.1
Glyma.16G010200 Glycine max HOM05D004368 ORTHO05D004990 6.0e-129 464.5 298 79.9
Lalb_Chr17g0343461 Lupinus albus HOM05D004368 ORTHO05D004990 2.1e-126 456.1 299 77.6
VMungo0540G1553 Vigna mungo HOM05D004368 ORTHO05D004990 4.8e-118 428.3 269 81.4
Phvul.006G206500 Phaseolus vulgaris HOM05D004368 ORTHO05D004990 2.4e-117 426.0 269 81.0
Lalb_Chr04g0253731 Lupinus albus HOM05D004368 ORTHO05D004990 5.3e-117 424.9 299 73.9
CsaV3_3G030850 Cucumis sativus L. HOM05D000945 ORTHO05D000919 9.4e-106 387.5 299 68.2
ClCG07G014470 Citrullus lanatus HOM05D004368 ORTHO05D004990 2.1e-105 386.3 299 68.9
QL05p003761 Quercus lobata HOM05D004368 ORTHO05D004990 4.4e-103 378.6 302 67.5
Sed0018133 Sechium edule HOM05D004368 ORTHO05D004990 3.7e-102 375.6 300 68.0
COL.COLO4_30792 Corchorus olitorius HOM05D004368 ORTHO05D004990 2.2e-99 366.3 330 62.1
Haze_16075 Corylus avellana HOM05D004368 ORTHO05D004990 2.9e-99 365.9 301 66.1
CiPaw.01G216100 Carya illinoinensis HOM05D004368 ORTHO05D004990 5.0e-99 365.2 301 66.8
MD17G1148400 Malus domestica HOM05D004368 ORTHO05D004990 8.5e-99 364.4 303 65.0
FAN09G0342 Fragaria x ananassa HOM05D004368 ORTHO05D004990 1.4e-98 363.6 303 66.0
Thecc.06G124200 Theobroma cacao HOM05D004368 ORTHO05D004990 4.2e-98 362.1 334 60.5
MELO3C022680.2 Cucumis melo HOM05D004368 ORTHO05D004990 7.2e-98 361.3 269 69.5
RcHm_v2.0_Chr2g0146421 Rosa chinensis HOM05D004368 ORTHO05D004990 1.4e-96 357.1 300 65.0
Duzib235G0527 Durio zibethinus HOM05D004368 ORTHO05D004990 3.9e-96 355.5 330 60.9
Duzib160G0466 Durio zibethinus HOM05D004368 ORTHO05D004990 8.8e-96 354.4 330 60.9
FAN02G3674 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.8e-96 354.4 302 64.9
FAN05G4100 Fragaria x ananassa HOM05D004368 ORTHO05D004990 8.8e-96 354.4 302 64.9
Gohir.A05G138800 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.5e-95 353.6 219 82.2
Gohir.D05G141000 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.0e-95 353.2 225 80.0
Gorai.009G145200 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.6e-95 352.8 219 81.7
CANSAT56G3889 Cannabis sativa HOM05D004368 ORTHO05D004990 1.3e-94 350.5 302 64.9
Manes.11G016500 Manihot esculenta HOM05D004368 ORTHO05D004990 1.3e-94 350.5 219 80.8
Ciclev10026090m.g Citrus clementina HOM05D004368 ORTHO05D004990 2.8e-94 349.4 330 60.3
Sc15g0000580 Simmondsia chinensis HOM05D004368 ORTHO05D004990 6.3e-94 348.2 218 81.7
Actinidia21803 Actinidia chinensis HOM05D004368 ORTHO05D004990 1.8e-93 346.7 339 59.0
arahy.Tifrunner.gnm1.ann1.26KYL2 Arachis hypogaea HOM05D004368 ORTHO05D004990 2.4e-93 346.3 308 64.3
FvH4_6g35160 Fragaria vesca HOM05D004368 ORTHO05D004990 4.1e-93 345.5 229 77.7
Eucgr.F02457 Eucalyptus grandis HOM05D004368 ORTHO05D004990 7.0e-93 344.7 310 60.3
FAN14G3095 Fragaria x ananassa HOM05D004368 ORTHO05D004990 2.0e-92 343.2 326 60.1
TAR626G1097 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.6e-92 342.8 228 76.8
Potri.001G166000 Populus trichocarpa HOM05D004368 ORTHO05D004990 3.5e-92 342.4 229 76.0
CSS0030612 Camellia sinensis var. sinensis HOM05D004368 ORTHO05D004990 4.5e-92 342.0 227 76.2
Cpa.g.sc25.148 Carica papaya HOM05D004368 ORTHO05D004990 1.0e-91 340.9 212 80.7
Gorai.010G235500 Gossypium raimondii HOM05D004368 ORTHO05D004990 1.0e-91 340.9 219 79.0
TAR468G0014 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.0e-91 340.9 255 69.0
Gohir.A06G193900 Gossypium hirsutum HOM05D004368 ORTHO05D004990 1.7e-91 340.1 236 73.3
Gohir.D06G201700 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.9e-91 339.3 219 78.5
Cc06_g01580 Coffea canephora HOM05D004368 ORTHO05D004990 3.8e-91 339.0 233 75.1
Peaxi162Scf00043g02929 Petunia axillaris HOM05D004368 ORTHO05D004990 3.8e-91 339.0 225 75.6
Rhsim08G0241200 Rhododendron simsii HOM05D004368 ORTHO05D004990 3.8e-91 339.0 215 80.9
Nn8g38578 Nelumbo nucifera HOM05D004368 ORTHO05D004990 5.0e-91 338.6 228 76.3
Nitab4.5_0003342g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 5.0e-91 338.6 279 65.2
Actinidia32205 Actinidia chinensis HOM05D004368 ORTHO05D004990 8.5e-91 337.8 218 78.0
Hund18675 Selenicereus undatus HOM05D004368 ORTHO05D004990 8.5e-91 337.8 227 76.2
DCAR_022662 Daucus carota HOM05D004368 ORTHO05D004990 1.9e-90 336.7 265 68.3
THA.LOC104822665 Tarenaya hassleriana HOM05D004368 ORTHO05D004990 2.5e-90 336.3 223 77.1
GSVIVG01016719001 Vitis vinifera HOM05D004368 ORTHO05D004990 5.5e-90 335.1 225 74.7
ECA247G3177 Erigeron canadensis HOM05D004368 ORTHO05D004990 7.2e-90 334.7 220 75.9
vmacro06407 Vaccinium macrocarpon HOM05D004368 ORTHO05D004990 7.2e-90 334.7 225 76.9
MBI02_g13231_MAGBIO Magnolia biondii HOM05D004368 ORTHO05D004990 9.4e-90 334.3 219 77.6
BcaC01g03958 Brassica carinata HOM05D004368 ORTHO05D004990 1.2e-89 334.0 315 60.6
CARHR088970 Cardamine hirsuta HOM05D004368 ORTHO05D004990 1.2e-89 334.0 219 78.1
Lj9C535T4 Lonicera japonica HOM05D004368 ORTHO05D004990 1.6e-89 333.6 238 72.3
HanXRQChr15g0497161 Helianthus annuus HOM05D004368 ORTHO05D004990 2.1e-89 333.2 220 77.7
Hma1.2p1_0414F.1_g147650 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 2.1e-89 333.2 225 76.0
Sp3g12370 Schrenkiella parvula HOM05D004368 ORTHO05D004990 2.1e-89 333.2 226 76.5
Nitab4.5_0000845g0110 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.7e-89 332.8 226 74.8
Ah.15g095150 Amaranthus hybridus HOM05D004368 ORTHO05D004990 4.7e-89 332.0 222 76.1
AUR62009921 Chenopodium quinoa HOM05D004368 ORTHO05D004990 4.7e-89 332.0 222 75.2
SalBow5G3644 Salvia bowleyana HOM05D004368 ORTHO05D004990 6.1e-89 331.6 223 76.2
PGR119G1615 Punica granatum HOM05D004368 ORTHO05D004990 8.0e-89 331.3 225 73.8
MD09G1178400 Malus domestica HOM05D004368 ORTHO05D004990 1.4e-88 330.5 234 72.6
AL3G26340 Arabidopsis lyrata HOM05D004368 ORTHO05D004990 1.8e-88 330.1 219 78.1
BolC3t16938H Brassica oleracea HOM05D004368 ORTHO05D004990 1.8e-88 330.1 274 65.7
Carub.0003s1372 Capsella rubella HOM05D004368 ORTHO05D004990 1.8e-88 330.1 219 78.5
Thhalv10021156m.g Eutrema salsugineum HOM05D004368 ORTHO05D004990 1.8e-88 330.1 219 78.1
A03p38620 Brassica napus HOM05D004368 ORTHO05D004990 2.3e-88 329.7 219 78.1
AUR62001444 Chenopodium quinoa HOM05D004368 ORTHO05D004990 3.0e-88 329.3 222 74.3
SalBow5G0362 Salvia bowleyana HOM05D004368 ORTHO05D004990 3.0e-88 329.3 223 75.8
AT3G14110 Arabidopsis thaliana HOM05D004368 ORTHO05D004990 4.0e-88 328.9 219 78.1
Peaxi162Scf01157g00111 Petunia axillaris HOM05D004368 ORTHO05D004990 4.0e-88 328.9 262 66.0
Sopen09g028680 Solanum pennellii HOM05D004368 ORTHO05D004990 4.0e-88 328.9 231 72.7
Solyc09g072880.3 Solanum lycopersicum HOM05D004368 ORTHO05D004990 5.2e-88 328.6 262 66.4
C03p46730 Brassica napus HOM05D004368 ORTHO05D004990 6.7e-88 328.2 219 77.6
C05p53530 Brassica napus HOM05D004368 ORTHO05D004990 6.7e-88 328.2 219 77.2
BolC5t34030H Brassica oleracea HOM05D004368 ORTHO05D004990 6.7e-88 328.2 219 77.2
Lj5A32G57 Lonicera japonica HOM05D004368 ORTHO05D004990 6.7e-88 328.2 236 69.5
Sopen06g002970 Solanum pennellii HOM05D004368 ORTHO05D004990 6.7e-88 328.2 235 72.3
PGSC0003DMG400003792 Solanum tuberosum HOM05D004368 ORTHO05D004990 6.7e-88 328.2 231 72.3
BraA03t13009Z Brassica rapa HOM05D004368 ORTHO05D004990 8.8e-88 327.8 219 77.6
Hma1.2p1_0311F.1_g121230 Hydrangea macrophylla HOM05D004368 ORTHO05D004990 8.8e-88 327.8 265 68.3
TWI23G0003 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 8.8e-88 327.8 218 75.2
Solyc06g008160.4 Solanum lycopersicum HOM05D004368 ORTHO05D004990 1.2e-87 327.4 233 73.0
Sopen09g028700 Solanum pennellii HOM05D004368 ORTHO05D004990 1.2e-87 327.4 229 72.9
A05p35340 Brassica napus HOM05D004368 ORTHO05D004990 1.5e-87 327.0 221 77.4
BraA05t22344Z Brassica rapa HOM05D004368 ORTHO05D004990 1.5e-87 327.0 221 77.4
CAN.G1487.1 Capsicum annuum HOM05D004368 ORTHO05D004990 1.5e-87 327.0 225 72.9
DCAR_016106 Daucus carota HOM05D004368 ORTHO05D004990 2.0e-87 326.6 218 75.2
CAN.G941.28 Capsicum annuum HOM05D004368 ORTHO05D004990 3.3e-87 325.9 235 71.9
Oeu064511.1 Olea europaea HOM05D004368 ORTHO05D004990 3.3e-87 325.9 211 77.7
Aa31LG8G1340 Aethionema arabicum HOM05D004368 ORTHO05D004990 4.4e-87 325.5 218 76.6
BcaB04g18818 Brassica carinata HOM05D004368 ORTHO05D004990 1.3e-86 323.9 223 76.2
ECA248G3608 Erigeron canadensis HOM05D004368 ORTHO05D004990 1.3e-86 323.9 218 78.0
Aqoxy7G01007 Aquilegia oxysepala HOM05D004368 ORTHO05D004990 2.8e-86 322.8 221 74.7
ATR0568G120 Amborella trichopoda HOM05D004368 ORTHO05D004990 1.8e-85 320.1 224 74.1
EL10Ac7g16443 Beta vulgaris HOM05D004368 ORTHO05D004990 1.2e-84 317.4 215 74.0
unitig_27.g24839 Utricularia gibba HOM05D004368 ORTHO05D004990 1.6e-84 317.0 226 71.7
Lsat_1_v5_gn_4_91400 Lactuca sativa HOM05D004368 ORTHO05D004990 3.5e-84 315.8 218 75.7
unitig_27.g24862 Utricularia gibba HOM05D004368 ORTHO05D004990 3.5e-84 315.8 226 71.2
Migut.L01998 Erythranthe guttata HOM05D004368 ORTHO05D004990 4.5e-84 315.5 224 71.0
PSO386G0078 Papaver somniferum HOM05D004368 ORTHO05D004990 7.7e-84 314.7 222 69.8
PSO724G0024 Papaver somniferum HOM05D004368 ORTHO05D004990 1.3e-83 313.9 222 69.8
HPP92_003012 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.5e-82 310.5 216 72.2
Sabra01G0127300 Salix brachista HOM05D004368 ORTHO05D004990 4.2e-82 308.9 290 59.3
CDE05G2024 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 1.6e-81 307.0 216 71.8
unitig_699.g19383 Utricularia gibba HOM05D004368 ORTHO05D004990 3.6e-81 305.8 245 66.1
CDE04G0878 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 4.7e-81 305.4 218 70.2
arahy.Tifrunner.gnm1.ann1.AFL61P Arachis hypogaea HOM05D004368 ORTHO05D004990 6.1e-81 305.1 178 86.5
HanXRQChr09g0277121 Helianthus annuus HOM05D004368 ORTHO05D004990 6.8e-80 301.6 226 71.7
Os01g0510600 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 1.5e-79 300.4 213 70.4
Zm00001eb308830 Zea mays HOM05D004368 ORTHO05D004990 1.3e-78 297.4 222 66.7
Nn6g35672 Nelumbo nucifera HOM05D004368 ORTHO05D004990 3.7e-78 295.8 222 69.4
BcaC05g29122 Brassica carinata HOM05D004368 ORTHO05D004990 6.3e-78 295.0 219 70.8
Atru.chr1.4073 Acer truncatum HOM05D004368 ORTHO05D004990 1.0e-75 287.7 177 81.9
Nitab4.5_0006980g0020 Nicotiana tabacum HOM05D004368 ORTHO05D004990 1.8e-69 266.9 170 78.8
Gorai.004G102400 Gossypium raimondii HOM05D004368 ORTHO05D004990 2.3e-67 260.0 191 72.8
Os02g0586800 Oryza sativa ssp. japonica HOM05D004368 ORTHO05D004990 5.0e-67 258.8 224 60.3
Nitab4.5_0000326g0270 Nicotiana tabacum HOM05D004368 ORTHO05D004990 2.5e-66 256.5 167 77.2
Atru.chr1.4083 Acer truncatum HOM05D004368 ORTHO05D004990 1.6e-65 253.8 174 74.7
Gorai.001G096600 Gossypium raimondii HOM05D004368 ORTHO05D004990 4.4e-63 245.7 205 65.9
SGA_v2.0_scaffold110G31269 Striga asiatica HOM05D004368 ORTHO05D004990 4.4e-63 245.7 324 46.6
Mapoly0108s0002 Marchantia polymorpha HOM05D004368 ORTHO05D004990 4.9e-62 242.3 209 58.4
Mapoly0110s0050 Marchantia polymorpha HOM05D004368 ORTHO05D004990 4.9e-62 242.3 209 58.4
Gohir.D08G096333 Gossypium hirsutum HOM05D004368 ORTHO05D004990 3.5e-60 236.1 191 69.1
Dinv20409 Davidia involucrata HOM05D004368 ORTHO05D004990 6.0e-60 235.3 272 52.9
FAN05G2230 Fragaria x ananassa HOM05D004368 ORTHO05D004990 7.8e-60 235.0 201 64.7
CDE05G2107 Ceratophyllum demersum HOM05D004368 ORTHO05D004990 3.9e-59 232.6 216 58.8
Dinv37846 Davidia involucrata HOM05D004368 ORTHO05D004990 2.5e-58 229.9 173 69.4
Gohir.D07G090325 Gossypium hirsutum HOM05D004368 ORTHO05D004990 2.5e-58 229.9 174 70.7
Prupe.3G037600 Prunus persica HOM05D004368 ORTHO05D004990 3.3e-58 229.6 240 55.8
AagrBONN_evm.TU.Sc2ySwM_228.3011 Anthoceros agrestis HOM05D004368 ORTHO05D004990 1.6e-57 227.3 189 61.4
Pp3c11_3130 Physcomitrium patens HOM05D004368 ORTHO05D004990 1.9e-53 213.8 228 50.9
CBR_g39266 Chara braunii HOM05D004368 ORTHO05D004990 5.4e-53 212.2 202 57.4
HPP92_027544 Vanilla planifolia HOM05D004368 ORTHO05D004990 1.1e-50 204.5 155 68.4
SMO141G0180 Selaginella moellendorffii HOM05D004368 ORTHO05D004990 4.7e-49 199.1 185 54.6
Rhsim03G0211800 Rhododendron simsii HOM05D004368 ORTHO05D004990 4.1e-45 186.0 235 46.4
Zm00001eb245590 Zea mays HOM05D004368 ORTHO05D004990 2.5e-42 176.8 150 60.7
Cre10.g460050 Chlamydomonas reinhardtii HOM05D004368 ORTHO05D004990 3.2e-29 133.3 241 36.1
TWI14G0995 Tripterygium wilfordii HOM05D004368 ORTHO05D004990 1.0e-27 128.3 218 39.4
PGSC0003DMG400014712 Solanum tuberosum HOM05D004368 ORTHO05D004990 1.4e-24 117.9 68 80.9
MCO11G340 Micromonas commoda HOM05D004368 ORTHO05D004990 2.9e-22 110.2 213 35.2
PRCOL_00003238 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 2.1e-20 104.0 209 34.9
MCO14G328 Micromonas commoda HOM05D004368 ORTHO05D004990 1.5e-18 97.8 236 32.2
PRCOL_00003077 Prasinoderma coloniale HOM05D004368 ORTHO05D004990 1.3e-14 84.7 244 27.9
TAR624G0904 Trochodendron aralioides HOM05D004368 ORTHO05D004990 2.3e-11 73.9 57 68.4
CBR_g29854 Chara braunii HOM05D004368 ORTHO05D004990 3.0e-11 73.6 72 58.3
RcHm_v2.0_Chr5g0074611 Rosa chinensis HOM05D004368 ORTHO05D004990 4.3e-10 69.7 61 55.7
SGA_v2.0_scaffold382G50397 Striga asiatica HOM05D004368 ORTHO05D004990 2.1e-09 67.4 42 69.0
TAR624G0589 Trochodendron aralioides HOM05D004368 ORTHO05D004990 1.4e-08 64.7 41 73.2
MCO15G457 Micromonas commoda HOM05D004368 ORTHO05D268172 1.2e-07 61.6 182 30.2
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 6.5e-06 55.8 72 38.9
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 6.5e-06 55.8 72 38.9
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 6.5e-06 55.8 72 38.9


User provided reference genes

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