Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g021030 Medicago truncatula HOM05D003398 ORTHO05D003867 3.6e-54 214.5 101 100.0
Lj1g0026325 Lotus japonicus HOM05D003398 ORTHO05D003867 4.6e-25 117.9 122 49.2
Psat4g168600 Pisum sativum HOM05D003398 ORTHO05D003867 1.8e-24 115.9 126 47.6
Psat7g187520 Pisum sativum HOM05D003398 ORTHO05D003867 1.8e-24 115.9 126 49.2
Psat7g187560 Pisum sativum HOM05D003398 ORTHO05D003867 2.3e-24 115.5 126 46.0
Medtr4g052800 Medicago truncatula HOM05D003398 ORTHO05D003867 3.0e-24 115.2 126 46.0
Ca_23690_v3 Cicer arietinum L. HOM05D003398 ORTHO05D003867 3.9e-24 114.8 126 49.2
Medtr4g052810 Medicago truncatula HOM05D003398 ORTHO05D003867 8.8e-24 113.6 126 46.0
TPR.G17224 Trifolium pratense HOM05D003398 ORTHO05D003867 1.1e-23 113.2 126 45.2
ECA232G2563 Erigeron canadensis HOM05D003398 ORTHO05D003867 2.5e-23 112.1 123 46.3
Nn8g40838 Nelumbo nucifera HOM05D003398 ORTHO05D003867 7.4e-23 110.5 126 45.2
MBI18_g30686_MAGBIO Magnolia biondii HOM05D003398 ORTHO05D003867 1.3e-22 109.8 117 50.4
GSVIVG01003986001 Vitis vinifera HOM05D003398 ORTHO05D003867 1.7e-22 109.4 117 48.7
Lalb_Chr24g0403491 Lupinus albus HOM05D003398 ORTHO05D003867 2.2e-22 109.0 123 46.3
Dinv33404 Davidia involucrata HOM05D003398 ORTHO05D003867 2.8e-22 108.6 123 45.5
arahy.Tifrunner.gnm1.ann1.YDW0SS Arachis hypogaea HOM05D003398 ORTHO05D003867 3.7e-22 108.2 117 47.0
vmacro05894 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 6.3e-22 107.5 117 47.0
Aqoxy5G03632 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 8.2e-22 107.1 117 48.7
Ciclev10016815m.g Citrus clementina HOM05D003398 ORTHO05D003867 8.2e-22 107.1 123 44.7
Atru.chr6.2457 Acer truncatum HOM05D003398 ORTHO05D003867 1.1e-21 106.7 123 44.7
CSS0009448 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 1.1e-21 106.7 123 44.7
CSS0035127 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 1.1e-21 106.7 123 44.7
HanXRQChr07g0199121 Helianthus annuus HOM05D003398 ORTHO05D003867 1.1e-21 106.7 123 45.5
Rhsim08G0047400 Rhododendron simsii HOM05D003398 ORTHO05D003867 1.1e-21 106.7 123 43.9
Cfa007310 Carpinus fangiana HOM05D003398 ORTHO05D003867 1.4e-21 106.3 117 46.2
HanXRQChr15g0486781 Helianthus annuus HOM05D003398 ORTHO05D003867 1.4e-21 106.3 123 45.5
Sc18g0003950 Simmondsia chinensis HOM05D003398 ORTHO05D003867 1.4e-21 106.3 117 47.0
TAR625G0506 Trochodendron aralioides HOM05D003398 ORTHO05D003867 1.4e-21 106.3 117 45.3
EL10Ac4g09990 Beta vulgaris HOM05D003398 ORTHO05D003867 1.8e-21 105.9 126 44.4
Lsat_1_v5_gn_4_184621 Lactuca sativa HOM05D003398 ORTHO05D003867 1.8e-21 105.9 117 46.2
Lalb_Chr21g0317671 Lupinus albus HOM05D003398 ORTHO05D003867 1.8e-21 105.9 124 46.0
RhsimUnG0005400 Rhododendron simsii HOM05D003398 ORTHO05D003867 1.8e-21 105.9 123 46.3
Aqoxy7G03969 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 2.4e-21 105.5 117 46.2
Solyc01g009443.1 Solanum lycopersicum HOM05D003398 ORTHO05D003867 2.4e-21 105.5 126 44.4
Sopen01g004980 Solanum pennellii HOM05D003398 ORTHO05D003867 2.4e-21 105.5 126 44.4
Manes.17G109300 Manihot esculenta HOM05D003398 ORTHO05D003867 3.1e-21 105.1 117 46.2
Actinidia36143 Actinidia chinensis HOM05D003398 ORTHO05D003867 4.1e-21 104.8 123 43.9
BraA05t23120Z Brassica rapa HOM05D003398 ORTHO05D003867 4.1e-21 104.8 124 41.9
MELO3C021605.2 Cucumis melo HOM05D003398 ORTHO05D003867 4.1e-21 104.8 124 43.5
PSO017G4179 Papaver somniferum HOM05D003398 ORTHO05D003867 4.1e-21 104.8 117 45.3
PSO478G3797 Papaver somniferum HOM05D003398 ORTHO05D003867 4.1e-21 104.8 117 45.3
Sabra16G0220000 Salix brachista HOM05D003398 ORTHO05D003867 4.1e-21 104.8 126 43.7
Aqoxy3G02674 Aquilegia oxysepala HOM05D003398 ORTHO05D003867 5.3e-21 104.4 117 46.2
CAN.G1497.1 Capsicum annuum HOM05D003398 ORTHO05D003867 5.3e-21 104.4 117 46.2
CAN.G386.27 Capsicum annuum HOM05D003398 ORTHO05D003867 5.3e-21 104.4 117 46.2
CARHR077440 Cardamine hirsuta HOM05D003398 ORTHO05D003867 5.3e-21 104.4 126 40.5
CiPaw.03G047800 Carya illinoinensis HOM05D003398 ORTHO05D003867 5.3e-21 104.4 123 43.9
Sed0013516 Sechium edule HOM05D003398 ORTHO05D003867 5.3e-21 104.4 117 48.7
A05p43830 Brassica napus HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
A06p26380 Brassica napus HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
BNapus_Darmor_BZH_scaffold_162p00150 Brassica napus HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
BNapus_Darmor_BZH_scaffold_78p00130 Brassica napus HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
C05p63410 Brassica napus HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
BolC1t05832H Brassica oleracea HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
BolC5t35005H Brassica oleracea HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
BraA01t04581Z Brassica rapa HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
Carub.0003s0256 Capsella rubella HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
CsaV3_5G026890 Cucumis sativus L. HOM05D003398 ORTHO05D003867 6.9e-21 104.0 117 45.3
Thhalv10021562m.g Eutrema salsugineum HOM05D003398 ORTHO05D003867 6.9e-21 104.0 126 41.3
Gohir.A07G224800 Gossypium hirsutum HOM05D003398 ORTHO05D003867 6.9e-21 104.0 123 42.3
Gohir.D07G232000 Gossypium hirsutum HOM05D003398 ORTHO05D003867 6.9e-21 104.0 123 42.3
Gorai.001G267200 Gossypium raimondii HOM05D003398 ORTHO05D003867 6.9e-21 104.0 123 42.3
RhsimUnG0088100 Rhododendron simsii HOM05D003398 ORTHO05D003867 6.9e-21 104.0 123 45.5
RcHm_v2.0_Chr2g0173661 Rosa chinensis HOM05D003398 ORTHO05D003867 6.9e-21 104.0 123 44.7
TWI36G1734 Tripterygium wilfordii HOM05D003398 ORTHO05D003867 6.9e-21 104.0 122 45.1
AL3G13090 Arabidopsis lyrata HOM05D003398 ORTHO05D003867 9.1e-21 103.6 126 41.3
AT3G03420 Arabidopsis thaliana HOM05D003398 ORTHO05D003867 9.1e-21 103.6 126 41.3
CSS0026494 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 9.1e-21 103.6 123 44.7
CSS0037210 Camellia sinensis var. sinensis HOM05D003398 ORTHO05D003867 9.1e-21 103.6 123 44.7
Peaxi162Scf00418g00733 Petunia axillaris HOM05D003398 ORTHO05D003867 9.1e-21 103.6 117 45.3
PGR142G0179 Punica granatum HOM05D003398 ORTHO05D003867 9.1e-21 103.6 117 43.6
COL.COLO4_29206 Corchorus olitorius HOM05D003398 ORTHO05D003867 1.2e-20 103.2 123 43.9
Manes.15G154000 Manihot esculenta HOM05D003398 ORTHO05D003867 1.2e-20 103.2 117 44.4
Phvul.004G059400 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 1.2e-20 103.2 117 44.4
Prupe.3G296400 Prunus persica HOM05D003398 ORTHO05D003867 1.2e-20 103.2 123 43.9
QL02p073523 Quercus lobata HOM05D003398 ORTHO05D003867 1.2e-20 103.2 117 44.4
Sp3g02420 Schrenkiella parvula HOM05D003398 ORTHO05D003867 1.2e-20 103.2 126 40.5
MSTRG.13012 Avicennia marina HOM05D003398 ORTHO05D003867 1.5e-20 102.8 124 42.7
BcaC05g30271 Brassica carinata HOM05D003398 ORTHO05D003867 1.5e-20 102.8 126 41.3
ClCG00G004890 Citrullus lanatus HOM05D003398 ORTHO05D003867 1.5e-20 102.8 117 44.4
ClCG09G019490 Citrullus lanatus HOM05D003398 ORTHO05D003867 1.5e-20 102.8 117 44.4
Duzib264G0135 Durio zibethinus HOM05D003398 ORTHO05D003867 1.5e-20 102.8 123 42.3
FvH4_2g09970 Fragaria vesca HOM05D003398 ORTHO05D003867 1.5e-20 102.8 123 43.1
FAN15G2381 Fragaria x ananassa HOM05D003398 ORTHO05D003867 1.5e-20 102.8 123 43.1
FAN24G2305 Fragaria x ananassa HOM05D003398 ORTHO05D003867 1.5e-20 102.8 123 43.1
FAN27G1215 Fragaria x ananassa HOM05D003398 ORTHO05D003867 1.5e-20 102.8 123 43.1
MD09G1020000 Malus domestica HOM05D003398 ORTHO05D003867 1.5e-20 102.8 123 43.1
Hund07917 Selenicereus undatus HOM05D003398 ORTHO05D003867 1.5e-20 102.8 126 42.1
PGSC0003DMG400011703 Solanum tuberosum HOM05D003398 ORTHO05D003867 1.5e-20 102.8 126 42.9
BcaC09g47745 Brassica carinata HOM05D003398 ORTHO05D003867 2.0e-20 102.4 126 40.5
AUR62034120 Chenopodium quinoa HOM05D003398 ORTHO05D003867 2.0e-20 102.4 126 42.9
Cc07_g00160 Coffea canephora HOM05D003398 ORTHO05D003867 2.0e-20 102.4 123 41.5
FAN20G3040 Fragaria x ananassa HOM05D003398 ORTHO05D003867 2.0e-20 102.4 123 43.9
Thecc.04G022800 Theobroma cacao HOM05D003398 ORTHO05D003867 2.0e-20 102.4 123 42.3
Ah.05g175590 Amaranthus hybridus HOM05D003398 ORTHO05D003867 2.6e-20 102.1 126 42.9
BcaC05g30275 Brassica carinata HOM05D003398 ORTHO05D003867 2.6e-20 102.1 117 42.7
AUR62037710 Chenopodium quinoa HOM05D003398 ORTHO05D003867 2.6e-20 102.1 126 42.1
MD15G1129500 Malus domestica HOM05D003398 ORTHO05D003867 2.6e-20 102.1 123 43.1
Lj7A603G63 Lonicera japonica HOM05D003398 ORTHO05D003867 3.4e-20 101.7 117 43.6
Potri.001G339900 Populus trichocarpa HOM05D003398 ORTHO05D003867 3.4e-20 101.7 126 40.5
arahy.Tifrunner.gnm1.ann1.47K06E Arachis hypogaea HOM05D003398 ORTHO05D003867 4.5e-20 101.3 118 45.8
Ca_19415_v3 Cicer arietinum L. HOM05D003398 ORTHO05D003867 4.5e-20 101.3 107 49.5
THA.LOC104820838 Tarenaya hassleriana HOM05D003398 ORTHO05D003867 4.5e-20 101.3 126 42.1
arahy.Tifrunner.gnm1.ann1.38E20H Arachis hypogaea HOM05D003398 ORTHO05D003867 5.9e-20 100.9 118 45.8
CANSAT21G2202 Cannabis sativa HOM05D003398 ORTHO05D003867 5.9e-20 100.9 117 44.4
CDE07G0781 Ceratophyllum demersum HOM05D003398 ORTHO05D003867 5.9e-20 100.9 117 44.4
Glyma.05G114300 Glycine max HOM05D003398 ORTHO05D003867 5.9e-20 100.9 128 39.8
Lj2g0003632 Lotus japonicus HOM05D003398 ORTHO05D003867 5.9e-20 100.9 128 39.8
vmacro18303 Vaccinium macrocarpon HOM05D003398 ORTHO05D003867 5.9e-20 100.9 117 43.6
Oeu050452.1 Olea europaea HOM05D003398 ORTHO05D003867 7.7e-20 100.5 123 42.3
Aa31LG5G13920 Aethionema arabicum HOM05D003398 ORTHO05D003867 1.0e-19 100.1 126 39.7
ATR0824G258 Amborella trichopoda HOM05D003398 ORTHO05D003867 1.3e-19 99.8 117 44.4
arahy.Tifrunner.gnm1.ann1.2ED5FZ Arachis hypogaea HOM05D003398 ORTHO05D003867 1.3e-19 99.8 118 45.8
Haze_14782 Corylus avellana HOM05D003398 ORTHO05D003867 1.3e-19 99.8 114 45.6
SGA_v2.0_scaffold34G13651 Striga asiatica HOM05D003398 ORTHO05D003867 1.3e-19 99.8 123 40.7
unitig_21.g20275 Utricularia gibba HOM05D003198 ORTHO05D003867 1.3e-19 99.8 123 42.3
Duzib264G0348 Durio zibethinus HOM05D003398 ORTHO05D003867 2.2e-19 99.0 123 42.3
Eucgr.I01706 Eucalyptus grandis HOM05D003398 ORTHO05D003867 2.9e-19 98.6 117 41.9
Migut.E00642 Erythranthe guttata HOM05D003398 ORTHO05D003867 3.8e-19 98.2 121 41.3
Lj1g0020548 Lotus japonicus HOM05D003398 ORTHO05D003867 5.0e-19 97.8 128 39.1
Phvul.003G074200 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 5.0e-19 97.8 113 44.2
THA.LOC104820837 Tarenaya hassleriana HOM05D003398 ORTHO05D003867 5.0e-19 97.8 122 42.6
Oeu054646.1 Olea europaea HOM05D003398 ORTHO05D003867 6.5e-19 97.4 123 40.7
Sabra17G0099900 Salix brachista HOM05D003398 ORTHO05D003867 6.5e-19 97.4 117 41.0
Sabra17G0103200 Salix brachista HOM05D003398 ORTHO05D003867 6.5e-19 97.4 117 41.0
DCAR_021745 Daucus carota HOM05D003398 ORTHO05D003867 8.5e-19 97.1 115 43.5
Lalb_Chr20g0109481 Lupinus albus HOM05D003398 ORTHO05D003867 8.5e-19 97.1 115 44.3
SGA_v2.0_scaffold47G17675 Striga asiatica HOM05D003398 ORTHO05D003867 1.1e-18 96.7 126 40.5
Zm00001eb079360 Zea mays HOM05D003398 ORTHO05D003867 1.1e-18 96.7 114 43.0
Duzib147G0181 Durio zibethinus HOM05D003398 ORTHO05D003867 1.4e-18 96.3 117 41.9
Hund13034 Selenicereus undatus HOM05D003398 ORTHO05D003867 1.4e-18 96.3 123 40.7
Glyma.16G067200 Glycine max HOM05D003398 ORTHO05D003867 1.9e-18 95.9 113 45.1
Gohir.A07G224700 Gossypium hirsutum HOM05D003398 ORTHO05D003867 1.9e-18 95.9 99 47.5
Os12g0288900 Oryza sativa ssp. japonica HOM05D003398 ORTHO05D003867 1.9e-18 95.9 119 40.3
SalBow5G0434 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.9e-18 95.9 116 44.8
HPP92_009920 Vanilla planifolia HOM05D003398 ORTHO05D003867 2.5e-18 95.5 59 64.4
arahy.Tifrunner.gnm1.ann1.0A6Q27 Arachis hypogaea HOM05D003398 ORTHO05D003867 3.2e-18 95.1 118 41.5
arahy.Tifrunner.gnm1.ann1.F3JNFU Arachis hypogaea HOM05D003398 ORTHO05D003867 3.2e-18 95.1 118 41.5
BcaC05g30535 Brassica carinata HOM05D003398 ORTHO05D003867 4.2e-18 94.7 62 61.3
Potri.017G120800 Populus trichocarpa HOM05D003398 ORTHO05D003867 4.2e-18 94.7 117 40.2
VMungo1383G1108 Vigna mungo HOM05D003398 ORTHO05D003867 5.5e-18 94.4 113 45.1
AUR62042865 Chenopodium quinoa HOM05D003398 ORTHO05D003867 9.4e-18 93.6 62 61.3
HPP92_023200 Vanilla planifolia HOM05D003398 ORTHO05D003867 9.4e-18 93.6 53 69.8
Phvul.002G317300 Phaseolus vulgaris HOM05D003398 ORTHO05D003867 1.6e-17 92.8 129 42.6
SalBow5G3830 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.6e-17 92.8 117 42.7
PSO067G0049 Papaver somniferum HOM05D003398 ORTHO05D003867 2.1e-17 92.4 117 39.3
Os04g0482700 Oryza sativa ssp. japonica HOM05D003398 ORTHO05D003867 2.7e-17 92.0 126 36.5
TWI36G1505 Tripterygium wilfordii HOM05D003398 ORTHO05D003867 6.1e-17 90.9 52 69.2
Medtr8g021060 Medicago truncatula HOM05D003398 ORTHO05D003867 7.9e-17 90.5 96 53.1
arahy.Tifrunner.gnm1.ann1.BK7YP9 Arachis hypogaea HOM05D003398 ORTHO05D003867 1.4e-16 89.7 110 43.6
Nitab4.5_0000227g0210 Nicotiana tabacum HOM05D003398 ORTHO05D003867 1.4e-16 89.7 53 67.9
Nitab4.5_0002914g0030 Nicotiana tabacum HOM05D003398 ORTHO05D003867 1.4e-16 89.7 53 67.9
SHI03844 Sapria himalayana HOM05D003398 ORTHO05D003867 1.4e-16 89.7 58 62.1
Pp3c20_19010 Physcomitrium patens HOM05D003398 ORTHO05D003867 3.0e-16 88.6 123 41.5
Lalb_Chr02g0158081 Lupinus albus HOM05D003398 ORTHO05D003867 1.5e-15 86.3 149 35.6
SalBow2G0798 Salvia bowleyana HOM05D003398 ORTHO05D003867 2.0e-15 85.9 104 48.1
Sc07g0004330 Simmondsia chinensis HOM05D003398 ORTHO05D003867 3.3e-15 85.1 53 62.3
Mapoly0024s0105 Marchantia polymorpha HOM05D003398 ORTHO05D003867 9.7e-15 83.6 118 36.4
SalBow3G3347 Salvia bowleyana HOM05D005187 ORTHO05D006321 9.7e-15 83.6 56 58.9
SalBow5G4242 Salvia bowleyana HOM05D003398 ORTHO05D003867 9.7e-15 83.6 125 36.0
arahy.Tifrunner.gnm1.ann1.G39Z7R Arachis hypogaea HOM05D003398 ORTHO05D003867 1.3e-14 83.2 53 64.2
SalBow8G1447 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.3e-14 83.2 116 37.9
COL.COLO4_29209 Corchorus olitorius HOM05D003398 ORTHO05D003867 3.7e-14 81.6 59 55.9
SalBow1G6722 Salvia bowleyana HOM05D003398 ORTHO05D003867 4.8e-14 81.3 115 41.7
Pp3c24_12610 Physcomitrium patens HOM05D003398 ORTHO05D003867 5.3e-13 77.8 126 36.5
SalBow1G3957 Salvia bowleyana HOM05D003398 ORTHO05D003867 1.2e-12 76.6 108 41.7
SMO339G0056 Selaginella moellendorffii HOM05D003398 ORTHO05D003867 2.6e-12 75.5 49 61.2
PRCOL_00006740 Prasinoderma coloniale HOM05D003398 ORTHO05D003867 5.9e-12 74.3 62 48.4
TAR374G0020 Trochodendron aralioides HOM05D003398 ORTHO05D003867 7.7e-12 73.9 68 45.6
RcHm_v2.0_Chr7g0217921 Rosa chinensis HOM05D003398 ORTHO05D003867 1.7e-11 72.8 48 64.6
Atru.chr4.365 Acer truncatum HOM05D003398 ORTHO05D003867 2.2e-11 72.4 93 40.9
arahy.Tifrunner.gnm1.ann1.J4CY8C Arachis hypogaea HOM05D003398 ORTHO05D003867 8.5e-11 70.5 98 39.8
MCO04G143 Micromonas commoda HOM05D003398 ORTHO05D003867 1.1e-10 70.1 118 30.5
RcHm_v2.0_Chr6g0297731 Rosa chinensis HOM05D003398 ORTHO05D003867 1.1e-10 70.1 48 62.5
RcHm_v2.0_Chr6g0276241 Rosa chinensis HOM05D003398 ORTHO05D003867 7.2e-10 67.4 48 60.4
Atru.chr11.509 Acer truncatum HOM05D003398 ORTHO05D003867 3.3e-07 58.5 85 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3863 Anthoceros agrestis HOM05D003398 ORTHO05D003867 3.3e-07 58.5 95 34.7
Atru.chr1.3014 Acer truncatum HOM05D003398 ORTHO05D003867 1.3e-06 56.6 35 60.0
Atru.chr12.1129 Acer truncatum HOM05D003398 ORTHO05D003867 2.2e-06 55.8 35 60.0
SalBow1G0530 Salvia bowleyana HOM05D005187 ORTHO05D006321 4.8e-06 54.7 34 52.9


User provided reference genes

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