Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g020410 Medicago truncatula HOM05D008167 ORTHO05D010296 1.7e-63 245.7 116 100.0
Medtr8g020400 Medicago truncatula HOM05D008167 ORTHO05D010296 2.6e-40 168.7 193 52.3
TPR.G32489 Trifolium pratense HOM05D008167 ORTHO05D010296 1.4e-38 162.9 157 56.7
Psat4g183040 Pisum sativum HOM05D008167 ORTHO05D010296 7.9e-37 157.1 194 50.0
Lj3g0012000 Lotus japonicus HOM05D008167 ORTHO05D010296 1.5e-30 136.3 193 43.5
Lalb_Chr01g0013571 Lupinus albus HOM05D008167 ORTHO05D010296 1.9e-30 136.0 193 43.0
Ca_23370_v3 Cicer arietinum L. HOM05D008167 ORTHO05D010296 1.6e-29 132.9 193 43.5
arahy.Tifrunner.gnm1.ann1.DD9M5F Arachis hypogaea HOM05D008167 ORTHO05D010296 2.2e-26 122.5 189 42.3
arahy.Tifrunner.gnm1.ann1.R32LA5 Arachis hypogaea HOM05D008167 ORTHO05D010296 1.4e-25 119.8 189 41.8
VMungo0331G0414 Vigna mungo HOM05D008167 ORTHO05D010296 2.1e-21 105.9 185 36.2
GSVIVG01009002001 Vitis vinifera HOM05D008167 ORTHO05D010296 2.9e-15 85.5 191 31.9
Actinidia10306 Actinidia chinensis HOM05D008167 ORTHO05D010296 3.2e-14 82.0 193 32.1
Gohir.A01G186400 Gossypium hirsutum HOM05D008167 ORTHO05D010296 1.6e-13 79.7 49 65.3
TWI56G0729 Tripterygium wilfordii HOM05D008167 ORTHO05D010296 1.6e-13 79.7 105 41.9
Duzib093G0044 Durio zibethinus HOM05D008167 ORTHO05D010296 2.7e-13 79.0 49 63.3
Potri.002G093800 Populus trichocarpa HOM05D008167 ORTHO05D010296 3.6e-13 78.6 49 63.3
Cpa.g.sc66.82 Carica papaya HOM05D008167 ORTHO05D010296 6.1e-13 77.8 48 64.6
MD15G1365100 Malus domestica HOM05D008167 ORTHO05D010296 6.1e-13 77.8 97 43.3
Thecc.08G110600 Theobroma cacao HOM05D008167 ORTHO05D010296 6.1e-13 77.8 49 59.2
Gohir.D01G176900 Gossypium hirsutum HOM05D008167 ORTHO05D010296 1.0e-12 77.0 49 63.3
Gorai.002G219300 Gossypium raimondii HOM05D008167 ORTHO05D010296 1.0e-12 77.0 49 63.3
Manes.02G154800 Manihot esculenta HOM05D008167 ORTHO05D010296 1.0e-12 77.0 49 59.2
Atru.chr13.1254 Acer truncatum HOM05D008167 ORTHO05D010296 1.8e-12 76.3 49 63.3
COL.COLO4_16444 Corchorus olitorius HOM05D008167 ORTHO05D010296 3.0e-12 75.5 49 59.2
FvH4_5g37850 Fragaria vesca HOM05D008167 ORTHO05D010296 4.0e-12 75.1 54 59.3
FAN08G3120 Fragaria x ananassa HOM05D008167 ORTHO05D010296 4.0e-12 75.1 54 59.3
FAN18G0166 Fragaria x ananassa HOM05D008167 ORTHO05D010296 4.0e-12 75.1 54 59.3
Aqoxy6G00583 Aquilegia oxysepala HOM05D008167 ORTHO05D010296 5.2e-12 74.7 188 29.3
QL12p036142 Quercus lobata HOM05D008167 ORTHO05D010296 5.2e-12 74.7 49 57.1
Ciclev10001481m.g Citrus clementina HOM05D008167 ORTHO05D010296 6.8e-12 74.3 49 61.2
FAN13G0369 Fragaria x ananassa HOM05D008167 ORTHO05D010296 1.2e-11 73.6 49 57.1
FAN04G1438 Fragaria x ananassa HOM05D008167 ORTHO05D010296 1.5e-11 73.2 54 57.4
Glyma.16G006900 Glycine max HOM05D008167 ORTHO05D010296 1.5e-11 73.2 141 34.0
ECA232G3852 Erigeron canadensis HOM05D008167 ORTHO05D010296 2.0e-11 72.8 49 61.2
vmacro21234 Vaccinium macrocarpon HOM05D008167 ORTHO05D010296 2.0e-11 72.8 49 57.1
CANSAT25G1054 Cannabis sativa HOM05D008167 ORTHO05D010296 2.6e-11 72.4 49 53.1
RcHm_v2.0_Chr7g0239831 Rosa chinensis HOM05D008167 ORTHO05D010296 2.6e-11 72.4 54 57.4
CiPaw.05G235800 Carya illinoinensis HOM05D008167 ORTHO05D010296 3.4e-11 72.0 49 55.1
Prupe.1G513100 Prunus persica HOM05D008167 ORTHO05D010296 4.4e-11 71.6 54 57.4
DCAR_008714 Daucus carota HOM05D008167 ORTHO05D010296 9.8e-11 70.5 190 28.4
HanXRQChr04g0111501 Helianthus annuus HOM05D008167 ORTHO05D010296 1.3e-10 70.1 49 61.2
Lsat_1_v5_gn_0_9700 Lactuca sativa HOM05D008167 ORTHO05D010296 1.3e-10 70.1 54 59.3
PSO541G2703 Papaver somniferum HOM05D008167 ORTHO05D010296 1.7e-10 69.7 49 57.1
Cfa015915 Carpinus fangiana HOM05D008167 ORTHO05D010296 2.2e-10 69.3 49 51.0
Dinv13035 Davidia involucrata HOM05D008167 ORTHO05D010296 2.2e-10 69.3 49 59.2
Lj4C719T5 Lonicera japonica HOM05D008167 ORTHO05D010296 8.3e-10 67.4 49 55.1
Sabra02G0073900 Salix brachista HOM05D008167 ORTHO05D010296 8.3e-10 67.4 41 63.4
Glyma.07G037500 Glycine max HOM05D008167 ORTHO05D010296 1.8e-09 66.2 53 64.2
Lj4C716T9 Lonicera japonica HOM05D008167 ORTHO05D010296 2.4e-09 65.9 49 55.1
Nn1g05299 Nelumbo nucifera HOM05D008167 ORTHO05D010296 3.1e-09 65.5 49 55.1
Haze_00155 Corylus avellana HOM05D008167 ORTHO05D010296 4.1e-09 65.1 49 49.0
TAR628G0982 Trochodendron aralioides HOM05D008167 ORTHO05D010296 4.1e-09 65.1 49 55.1
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 5.4e-09 64.7 49 49.0
PSO133G0102 Papaver somniferum HOM05D008167 ORTHO05D010296 1.2e-08 63.5 48 56.2
EL10Ac1g01257 Beta vulgaris HOM05D008167 ORTHO05D010296 2.7e-08 62.4 49 51.0
Haze_08650 Corylus avellana HOM05D008167 ORTHO05D010296 3.5e-08 62.0 49 44.9
AUR62027724 Chenopodium quinoa HOM05D008167 ORTHO05D010296 4.5e-08 61.6 48 52.1
MBI02_g36661_MAGBIO Magnolia biondii HOM05D008167 ORTHO05D010296 5.9e-08 61.2 49 46.9
ATR0564G341 Amborella trichopoda HOM05D008167 ORTHO05D010296 2.9e-07 58.9 48 45.8
Os06g0222800 Oryza sativa ssp. japonica HOM05D008167 ORTHO05D010296 3.8e-07 58.5 54 46.3
Eucgr.F02444 Eucalyptus grandis HOM05D008167 ORTHO05D010296 2.5e-06 55.8 177 27.7


User provided reference genes

Program Settings