Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g015900 Medicago truncatula HOM05D000096 ORTHO05D000045 8.5e-30 133.3 66 100.0
TPR.G11185 Trifolium pratense HOM05D000096 ORTHO05D000045 2.2e-09 65.5 56 58.9
Medtr7g110460 Medicago truncatula HOM05D000096 ORTHO05D000045 3.7e-09 64.7 38 78.9
Medtr3g451160 Medicago truncatula HOM05D000096 ORTHO05D000045 8.2e-09 63.5 38 76.3
Medtr3g452260 Medicago truncatula HOM05D000096 ORTHO05D000045 8.2e-09 63.5 38 76.3
ECA236G4996 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.4e-08 62.8 56 62.5
C09p46800 Brassica napus HOM05D000096 ORTHO05D000045 1.8e-08 62.4 57 59.6
Lj3g0022394 Lotus japonicus HOM05D000096 ORTHO05D000045 1.8e-08 62.4 49 61.2
C03p65010 Brassica napus HOM05D000096 ORTHO05D000045 3.1e-08 61.6 56 58.9
Medtr7g046285 Medicago truncatula HOM05D000096 ORTHO05D000045 4.1e-08 61.2 56 55.4
C01p17350 Brassica napus HOM05D000096 ORTHO05D000045 5.3e-08 60.8 38 78.9
BolC2t10350H Brassica oleracea HOM05D000096 ORTHO05D000045 5.3e-08 60.8 38 78.9
TPR.G21151 Trifolium pratense HOM05D000096 ORTHO05D000045 5.3e-08 60.8 38 73.7
A05p27530 Brassica napus HOM05D000096 ORTHO05D000045 7.0e-08 60.5 38 78.9
C03p86030 Brassica napus HOM05D000096 ORTHO05D000045 7.0e-08 60.5 38 78.9
BolC2t08343H Brassica oleracea HOM05D000096 ORTHO05D000045 7.0e-08 60.5 37 81.1
BolC3t20895H Brassica oleracea HOM05D000096 ORTHO05D000045 7.0e-08 60.5 38 78.9
BolC4t25353H Brassica oleracea HOM05D000096 ORTHO05D000045 7.0e-08 60.5 38 78.9
ECA238G3552 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.0e-08 60.5 38 78.9
A06p16980 Brassica napus HOM05D000096 ORTHO05D000045 9.1e-08 60.1 56 57.1
CARHR035440 Cardamine hirsuta HOM05D000096 ORTHO05D000045 1.2e-07 59.7 39 69.2
ECA248G1849 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.2e-07 59.7 38 76.3
HanXRQChr03g0061461 Helianthus annuus HOM05D000096 ORTHO05D000045 1.2e-07 59.7 38 76.3
A02p24560 Brassica napus HOM05D000096 ORTHO05D000045 1.6e-07 59.3 57 52.6
CARHR217850 Cardamine hirsuta HOM05D000096 ORTHO05D000045 1.6e-07 59.3 57 54.4
ECA240G2989 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.6e-07 59.3 35 80.0
TPR.G8666 Trifolium pratense HOM05D000096 ORTHO05D000045 1.6e-07 59.3 59 52.5
C09p41030 Brassica napus HOM05D000096 ORTHO05D000045 2.0e-07 58.9 57 52.6
Lj4g0022780 Lotus japonicus HOM05D000096 ORTHO05D000045 2.0e-07 58.9 38 73.7
LjContig00094g0010721 Lotus japonicus HOM05D000096 ORTHO05D000045 2.0e-07 58.9 38 73.7
LjContig00096g0004252 Lotus japonicus HOM05D000096 ORTHO05D000045 2.0e-07 58.9 38 73.7
TPR.G15922 Trifolium pratense HOM05D000096 ORTHO05D000045 2.0e-07 58.9 40 72.5
TPR.G8851 Trifolium pratense HOM05D000096 ORTHO05D000045 2.0e-07 58.9 37 78.4
CARHR104250 Cardamine hirsuta HOM05D000096 ORTHO05D000045 2.7e-07 58.5 38 71.1
CARHR114980 Cardamine hirsuta HOM05D000096 ORTHO05D000045 2.7e-07 58.5 56 57.1
CARHR258310 Cardamine hirsuta HOM05D000096 ORTHO05D000045 2.7e-07 58.5 38 71.1
Lj1g0013645 Lotus japonicus HOM05D000096 ORTHO05D000045 2.7e-07 58.5 38 68.4
TPR.G14138 Trifolium pratense HOM05D000096 ORTHO05D000045 2.7e-07 58.5 58 51.7
TPR.G365 Trifolium pratense HOM05D000096 ORTHO05D000045 2.7e-07 58.5 38 71.1
A05p20940 Brassica napus HOM05D000096 ORTHO05D000045 3.5e-07 58.2 57 57.9
BolC2t10325H Brassica oleracea HOM05D000096 ORTHO05D000045 3.5e-07 58.2 56 55.4
CARHR286450 Cardamine hirsuta HOM05D000096 ORTHO05D000045 3.5e-07 58.2 38 73.7
Medtr1g101230 Medicago truncatula HOM05D000096 ORTHO05D000045 3.5e-07 58.2 37 70.3
Medtr2g008505 Medicago truncatula HOM05D000096 ORTHO05D000045 3.5e-07 58.2 37 70.3
Medtr8g057880 Medicago truncatula HOM05D000096 ORTHO05D000045 3.5e-07 58.2 37 70.3
TPR.G9630 Trifolium pratense HOM05D000096 ORTHO05D000045 3.5e-07 58.2 37 75.7
C03p61150 Brassica napus HOM05D000096 ORTHO05D000045 4.5e-07 57.8 55 54.5
TPR.G878 Trifolium pratense HOM05D000096 ORTHO05D000045 4.5e-07 57.8 59 47.5
A06p18180 Brassica napus HOM05D000096 ORTHO05D000045 5.9e-07 57.4 57 50.9
C07p00750 Brassica napus HOM05D000096 ORTHO05D000045 5.9e-07 57.4 37 75.7
C07p01520 Brassica napus HOM05D000096 ORTHO05D000045 5.9e-07 57.4 56 53.6
C07p14850 Brassica napus HOM05D000096 ORTHO05D000045 5.9e-07 57.4 57 52.6
Lj2g0014783 Lotus japonicus HOM05D000096 ORTHO05D000045 5.9e-07 57.4 37 73.0
LjContig00141g0026560 Lotus japonicus HOM05D000096 ORTHO05D000045 5.9e-07 57.4 37 73.0
Medtr4g134740 Medicago truncatula HOM05D000096 ORTHO05D000045 5.9e-07 57.4 57 54.4
Medtr8g072100 Medicago truncatula HOM05D000096 ORTHO05D000045 5.9e-07 57.4 38 68.4
TPR.G18084 Trifolium pratense HOM05D000096 ORTHO05D000045 5.9e-07 57.4 37 75.7
CARHR161310 Cardamine hirsuta HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 71.1
CARHR218380 Cardamine hirsuta HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 71.1
CARHR257810 Cardamine hirsuta HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 71.1
ECA232G2437 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 71.1
ECA236G2932 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.7e-07 57.0 59 52.5
ECA246G2519 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 73.7
ECA246G2676 Erigeron canadensis HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 73.7
Lj6g0012163 Lotus japonicus HOM05D000096 ORTHO05D000045 7.7e-07 57.0 37 70.3
Medtr3g100990 Medicago truncatula HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 73.7
Medtr6g069780 Medicago truncatula HOM05D000096 ORTHO05D000045 7.7e-07 57.0 38 68.4
TPR.G15489 Trifolium pratense HOM05D000096 ORTHO05D000045 7.7e-07 57.0 37 73.0
TPR.G20920 Trifolium pratense HOM05D000096 ORTHO05D000045 7.7e-07 57.0 37 67.6
C05p33360 Brassica napus HOM05D000096 ORTHO05D000045 1.0e-06 56.6 56 55.4
ECA233G1381 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.0e-06 56.6 38 71.1
ECA238G0298 Erigeron canadensis HOM05D000096 ORTHO05D000045 1.0e-06 56.6 38 71.1
Lj1g0008627 Lotus japonicus HOM05D000096 ORTHO05D000045 1.0e-06 56.6 37 70.3
Lj3g0000363 Lotus japonicus HOM05D000096 ORTHO05D000045 1.0e-06 56.6 55 56.4
Lj3g0024542 Lotus japonicus HOM05D000096 ORTHO05D000045 1.0e-06 56.6 38 71.1
Medtr0196s0030 Medicago truncatula HOM05D000096 ORTHO05D036752 1.0e-06 56.6 35 71.4
TPR.G26472 Trifolium pratense HOM05D000096 ORTHO05D000045 1.0e-06 56.6 37 73.0
Aqoxy3G02516 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 1.3e-06 56.2 35 74.3
C02p40460 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-06 56.2 57 50.9
C05p53900 Brassica napus HOM05D000096 ORTHO05D000045 1.3e-06 56.2 57 50.9
BolC4t24217H Brassica oleracea HOM05D000096 ORTHO05D000045 1.3e-06 56.2 38 71.1
PSO017G5916 Papaver somniferum HOM05D000096 ORTHO05D000045 1.3e-06 56.2 38 68.4
TPR.G13258 Trifolium pratense HOM05D000096 ORTHO05D000045 1.3e-06 56.2 38 68.4
TWI09G0899 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 1.3e-06 56.2 35 80.0
CARHR031010 Cardamine hirsuta HOM05D000096 ORTHO05D005277 1.7e-06 55.8 38 68.4
CARHR259120 Cardamine hirsuta HOM05D000096 ORTHO05D000045 1.7e-06 55.8 38 68.4
Lj1g0018201 Lotus japonicus HOM05D000096 ORTHO05D000045 1.7e-06 55.8 38 71.1
Medtr3g048960 Medicago truncatula HOM05D000096 ORTHO05D000045 1.7e-06 55.8 37 67.6
TPR.G1822 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-06 55.8 55 52.7
TPR.G20281 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-06 55.8 38 68.4
TPR.G34741 Trifolium pratense HOM05D000096 ORTHO05D000045 1.7e-06 55.8 37 73.0
BolC2t10804H Brassica oleracea HOM05D000096 ORTHO05D000045 2.2e-06 55.5 38 71.1
BolC8t48490H Brassica oleracea HOM05D000096 ORTHO05D010037 2.2e-06 55.5 56 53.6
ECA238G2772 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.2e-06 55.5 38 71.1
Medtr0017s0290 Medicago truncatula HOM05D000096 ORTHO05D000045 2.2e-06 55.5 38 68.4
Medtr4g062370 Medicago truncatula HOM05D000096 ORTHO05D000045 2.2e-06 55.5 37 73.0
Medtr5g071700 Medicago truncatula HOM05D000096 ORTHO05D000045 2.2e-06 55.5 35 68.6
Medtr5g087830 Medicago truncatula HOM05D000096 ORTHO05D000045 2.2e-06 55.5 38 63.2
QL11p040805 Quercus lobata HOM05D000096 ORTHO05D000045 2.2e-06 55.5 35 74.3
TPR.G34836 Trifolium pratense HOM05D000096 ORTHO05D000045 2.2e-06 55.5 38 68.4
Aqoxy1G02588 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 2.9e-06 55.1 35 74.3
Aqoxy2G01909 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 2.9e-06 55.1 35 71.4
Aqoxy4G00964 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 2.9e-06 55.1 35 74.3
C06p16690 Brassica napus HOM05D000096 ORTHO05D000045 2.9e-06 55.1 56 50.0
Ciclev10003437m.g Citrus clementina HOM05D000096 ORTHO05D000045 2.9e-06 55.1 40 65.0
Ciclev10017725m.g Citrus clementina HOM05D000096 ORTHO05D000045 2.9e-06 55.1 40 65.0
ECA233G3626 Erigeron canadensis HOM05D000096 ORTHO05D000045 2.9e-06 55.1 37 70.3
ECA236G4851 Erigeron canadensis HOM05D009731 ORTHO05D000045 2.9e-06 55.1 56 53.6
ECA238G1995 Erigeron canadensis HOM05D000001 ORTHO05D011365 2.9e-06 55.1 59 52.5
Glyma.04G116000 Glycine max HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 71.1
Glyma.09G080200 Glycine max HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 71.1
Rhsim11G0115000 Rhododendron simsii HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 68.4
Rhsim13G0231700 Rhododendron simsii HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 68.4
TPR.G20355 Trifolium pratense HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 71.1
TPR.G21913 Trifolium pratense HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 68.4
TPR.G8078 Trifolium pratense HOM05D000096 ORTHO05D000045 2.9e-06 55.1 38 68.4
C02p27670 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-06 54.7 38 71.1
C05p31280 Brassica napus HOM05D000096 ORTHO05D000045 3.8e-06 54.7 38 71.1
C05p53240 Brassica napus HOM05D000096 ORTHO05D005277 3.8e-06 54.7 38 71.1
Carub.0045s0003 Capsella rubella HOM05D000096 ORTHO05D000045 3.8e-06 54.7 38 65.8
CARHR038360 Cardamine hirsuta HOM05D000096 ORTHO05D000045 3.8e-06 54.7 38 65.8
Ciclev10033686m.g Citrus clementina HOM05D000096 ORTHO05D000045 3.8e-06 54.7 40 62.5
ECA240G1019 Erigeron canadensis HOM05D000096 ORTHO05D000045 3.8e-06 54.7 38 71.1
Medtr1g012040 Medicago truncatula HOM05D000096 ORTHO05D000045 3.8e-06 54.7 34 73.5
C02p13330 Brassica napus HOM05D000096 ORTHO05D000045 5.0e-06 54.3 57 49.1
CARHR161290 Cardamine hirsuta HOM05D000096 ORTHO05D005277 5.0e-06 54.3 38 68.4
Ciclev10033859m.g Citrus clementina HOM05D000096 ORTHO05D000045 5.0e-06 54.3 37 67.6
ECA236G0125 Erigeron canadensis HOM05D000096 ORTHO05D000045 5.0e-06 54.3 38 71.1
Lj3g0022783 Lotus japonicus HOM05D000096 ORTHO05D000045 5.0e-06 54.3 37 70.3
Medtr1g102100 Medicago truncatula HOM05D000096 ORTHO05D000045 5.0e-06 54.3 37 67.6
Medtr7g108380 Medicago truncatula HOM05D000096 ORTHO05D000045 5.0e-06 54.3 34 73.5
TWI31G0491 Tripterygium wilfordii HOM05D000096 ORTHO05D000045 5.0e-06 54.3 38 68.4
Aqoxy2G01285 Aquilegia oxysepala HOM05D000096 ORTHO05D000045 6.5e-06 53.9 35 71.4
C09p36920 Brassica napus HOM05D000096 ORTHO05D000174 6.5e-06 53.9 37 73.0
BolC9t56522H Brassica oleracea HOM05D000096 ORTHO05D000174 6.5e-06 53.9 37 73.0
Ciclev10033312m.g Citrus clementina HOM05D000096 ORTHO05D000045 6.5e-06 53.9 40 62.5
ECA234G4814 Erigeron canadensis HOM05D000096 ORTHO05D000045 6.5e-06 53.9 37 67.6
Medtr1g106700 Medicago truncatula HOM05D000096 ORTHO05D000045 6.5e-06 53.9 65 43.1
Medtr3g109050 Medicago truncatula HOM05D000096 ORTHO05D000045 6.5e-06 53.9 38 68.4
Medtr4g030760 Medicago truncatula HOM05D000007 ORTHO05D000017 6.5e-06 53.9 36 69.4
Medtr5g074170 Medicago truncatula HOM05D018968 ORTHO05D000045 6.5e-06 53.9 32 78.1
Medtr6g029550 Medicago truncatula HOM05D000096 ORTHO05D000045 6.5e-06 53.9 38 65.8
TPR.G16827 Trifolium pratense HOM05D000096 ORTHO05D000045 6.5e-06 53.9 35 74.3
TPR.G25805 Trifolium pratense HOM05D000096 ORTHO05D000045 6.5e-06 53.9 35 74.3
TPR.G29574 Trifolium pratense HOM05D000096 ORTHO05D000045 6.5e-06 53.9 35 74.3
TPR.G31116 Trifolium pratense HOM05D000096 ORTHO05D000045 6.5e-06 53.9 37 70.3
ECA233G2825 Erigeron canadensis HOM05D000096 ORTHO05D000045 8.5e-06 53.5 38 68.4
Glyma.09G061100 Glycine max HOM05D000096 ORTHO05D000045 8.5e-06 53.5 38 68.4
Hma1.2p1_0099F.1_g048480 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.5e-06 53.5 37 62.2
Lj4g0020000 Lotus japonicus HOM05D000096 ORTHO05D000045 8.5e-06 53.5 38 71.1
Medtr3g010480 Medicago truncatula HOM05D000096 ORTHO05D000045 8.5e-06 53.5 36 69.4
Medtr6g018340 Medicago truncatula HOM05D000096 ORTHO05D000045 8.5e-06 53.5 38 65.8
Hund24532 Selenicereus undatus HOM05D000096 ORTHO05D000045 8.5e-06 53.5 43 58.1
TPR.G20752 Trifolium pratense HOM05D000096 ORTHO05D000045 8.5e-06 53.5 38 65.8
TPR.G22667 Trifolium pratense HOM05D000096 ORTHO05D000045 8.5e-06 53.5 37 70.3
TPR.G27355 Trifolium pratense HOM05D000096 ORTHO05D000045 8.5e-06 53.5 37 67.6
TPR.G38267 Trifolium pratense HOM05D000096 ORTHO05D000045 8.5e-06 53.5 38 68.4


User provided reference genes

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