Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 0.0e+00 1326.2 675 100.0
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 4.6e-278 961.1 570 87.7
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 8.1e-267 923.7 575 84.3
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 4.8e-259 897.9 564 83.2
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 1.8e-242 842.8 574 76.7
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.0e-240 837.0 564 78.4
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 8.5e-240 833.9 565 77.3
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 5.5e-239 831.2 565 77.7
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 4.7e-238 828.2 558 78.5
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 9.1e-226 787.3 531 78.7
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 5.2e-205 718.4 524 70.4
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 8.3e-203 711.1 488 72.3
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.4e-202 710.3 488 72.3
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 4.6e-201 705.3 486 73.0
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.3e-200 703.7 399 91.2
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 3.3e-199 699.1 509 71.3
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 1.8e-197 693.3 524 67.9
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 6.8e-197 691.4 483 71.2
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.5e-196 690.3 486 71.2
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 3.4e-196 689.1 539 67.0
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 5.8e-196 688.3 489 72.0
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 5.8e-196 688.3 517 69.2
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 1.3e-195 687.2 489 71.4
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.7e-195 686.8 531 67.4
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 3.7e-195 685.6 549 64.5
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.6e-193 680.2 505 70.7
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 3.5e-193 679.1 518 68.1
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 3.9e-192 675.6 474 71.7
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.9e-191 673.3 551 66.4
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 2.5e-191 672.9 517 67.9
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 3.3e-191 672.5 495 69.5
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 9.5e-191 671.0 498 69.7
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 1.6e-190 670.2 562 64.6
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 4.7e-190 668.7 515 67.2
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 6.2e-190 668.3 483 71.6
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 1.1e-189 667.5 519 66.3
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 4.0e-189 665.6 495 69.5
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 5.2e-189 665.2 546 65.2
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 6.8e-189 664.8 531 65.5
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 8.9e-189 664.5 528 66.5
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 1.2e-188 664.1 487 69.0
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 4.4e-188 662.1 526 65.2
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 9.8e-188 661.0 481 70.5
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 9.8e-188 661.0 540 65.0
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 2.9e-187 659.4 527 66.2
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 2.9e-187 659.4 485 67.8
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 6.4e-187 658.3 514 66.7
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 6.4e-187 658.3 527 66.2
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 8.3e-187 657.9 481 68.8
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.2e-186 656.0 551 63.0
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 7.1e-186 654.8 510 66.1
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 3.5e-185 652.5 524 64.9
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 7.8e-185 651.4 483 68.1
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.0e-184 651.0 524 64.7
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.0e-184 651.0 524 64.7
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 4.3e-183 645.6 481 67.6
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 4.3e-183 645.6 577 58.6
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 3.6e-182 642.5 527 64.3
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 3.6e-182 642.5 512 66.4
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 1.1e-181 641.0 576 60.6
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 3.1e-181 639.4 586 59.6
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 4.0e-181 639.0 486 64.8
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 6.8e-181 638.3 460 69.6
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 1.2e-180 637.5 481 65.1
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 2.0e-180 636.7 483 66.7
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 2.6e-180 636.3 487 64.7
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 3.4e-180 636.0 555 60.4
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 5.8e-180 635.2 487 64.5
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 7.6e-180 634.8 523 62.3
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 1.7e-179 633.6 522 64.9
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 3.8e-179 632.5 571 60.4
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 4.1e-178 629.0 545 60.2
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 4.1e-178 629.0 559 59.2
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 4.1e-178 629.0 526 61.2
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 7.1e-178 628.2 544 59.9
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 1.6e-177 627.1 505 65.9
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 7.8e-177 624.8 531 63.7
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 2.3e-176 623.2 545 59.6
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 9.6e-175 617.8 547 61.2
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.6e-174 615.9 567 60.5
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 1.8e-173 613.6 526 61.8
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 5.2e-173 612.1 481 65.5
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 1.5e-172 610.5 519 62.0
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 1.3e-171 607.4 481 63.6
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 2.9e-171 606.3 455 70.1
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 6.4e-171 605.1 552 58.7
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 3.5e-169 599.4 509 60.5
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 7.8e-169 598.2 481 63.6
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 1.4e-165 587.4 471 67.1
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 2.6e-164 583.2 545 59.3
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 7.6e-164 581.6 487 65.1
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 7.9e-161 571.6 488 62.5
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.5e-156 557.4 422 68.0
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 2.1e-153 547.0 439 67.7
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 3.5e-153 546.2 549 57.4
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 4.8e-150 535.8 505 57.6
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.5e-145 519.6 391 69.1
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.3e-144 516.9 521 53.4
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 9.6e-143 511.5 503 53.3
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 3.4e-140 503.1 515 56.5
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.0e-139 501.5 386 65.8
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 1.4e-138 497.7 423 65.0
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 3.7e-134 483.0 513 50.7
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 2.4e-133 480.3 457 58.4
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 6.9e-125 452.2 394 60.2
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 1.7e-123 447.6 287 78.4
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.9e-123 446.8 483 50.1
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.8e-120 437.6 306 71.6
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 7.2e-114 415.6 494 49.6
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 1.6e-108 397.9 537 45.1
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.3e-107 394.8 336 62.5
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 9.1e-101 372.1 488 44.1
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 2.9e-99 367.1 351 54.7
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 7.2e-98 362.5 325 64.3
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 5.7e-95 352.8 281 68.0
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 3.5e-92 343.6 266 66.5
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 2.9e-91 340.5 307 58.3
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.9e-90 337.8 559 38.3
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 8.9e-88 328.9 299 59.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 2.2e-78 297.7 258 61.2
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 2.0e-76 291.2 196 76.0
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.3e-75 287.7 293 55.3
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 1.5e-74 285.0 278 54.0
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.5e-74 285.0 301 55.5
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 1.5e-74 285.0 301 55.5
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 2.4e-69 267.7 349 44.7
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 1.2e-68 265.4 192 72.4
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.1e-64 252.3 191 64.9
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 1.3e-59 235.3 531 32.6
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 5.6e-58 229.9 178 65.7
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 1.8e-56 224.9 155 78.1
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 3.1e-56 224.2 247 53.8
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.2e-54 218.0 266 44.4
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.9e-54 216.9 219 54.3
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.5e-50 204.5 245 46.1
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.5e-50 204.5 244 46.3
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 4.9e-46 190.3 157 69.4
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 7.4e-42 176.4 145 65.5
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 3.1e-40 171.0 108 75.0
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 1.4e-37 162.2 122 68.9
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.1e-37 159.8 239 38.9
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 1.2e-36 159.1 129 58.1
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 4.6e-36 157.1 246 39.8
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 1.5e-34 152.1 199 44.2
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 1.6e-33 148.7 119 63.9
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 2.1e-33 148.3 150 58.7
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 9.7e-26 122.9 253 34.4
Hma1.2p1_0430F.1_g151230 Hydrangea macrophylla HOM05D001329 ORTHO05D004946 1.3e-22 112.5 130 43.8
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 6.7e-19 100.1 133 39.1
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 3.3e-18 97.8 73 60.3
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 5.7e-18 97.1 73 67.1
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 6.3e-17 93.6 69 60.9
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 1.2e-15 89.4 52 86.5
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.5e-15 89.0 141 39.0
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 4.5e-15 87.4 96 53.1
Cfa015409 Carpinus fangiana HOM05D007753 ORTHO05D009385 2.9e-14 84.7 61 65.6
Glyma.08G248800 Glycine max HOM05D001329 ORTHO05D004946 2.5e-13 81.6 48 89.6
arahy.Tifrunner.gnm1.ann1.R9IHKK Arachis hypogaea HOM05D001329 ORTHO05D010271 2.1e-12 78.6 51 74.5
Cpa.g.c44864 Carica papaya HOM05D001329 ORTHO05D004946 6.1e-12 77.0 53 66.0
arahy.Tifrunner.gnm1.ann1.H8VH8W Arachis hypogaea HOM05D008137 ORTHO05D010271 3.0e-11 74.7 50 72.0
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 3.0e-11 74.7 83 47.0
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 3.9e-11 74.3 49 67.3
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.1e-11 73.9 70 44.3
RcHm_v2.0_Chr2g0141071 Rosa chinensis HOM05D001329 ORTHO05D004946 6.7e-11 73.6 51 64.7
SHI11147 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-09 69.3 86 45.3
BcaC02g08434 Brassica carinata HOM05D001329 ORTHO05D004946 1.7e-09 68.9 56 58.9
AUR62022240 Chenopodium quinoa HOM05D001329 ORTHO05D004946 2.8e-09 68.2 101 36.6
BcaB01g06145 Brassica carinata HOM05D001329 ORTHO05D004946 4.8e-09 67.4 49 63.3
Oeu043914.1 Olea europaea HOM05D001329 ORTHO05D004946 2.4e-08 65.1 54 48.1
C04p54240 Brassica napus HOM05D001329 ORTHO05D004946 3.1e-08 64.7 90 45.6
arahy.Tifrunner.gnm1.ann1.6Z8QT9 Arachis hypogaea HOM05D001329 ORTHO05D010271 9.1e-08 63.2 51 62.7
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 3.4e-07 61.2 138 35.5
arahy.Tifrunner.gnm1.ann1.9Y3J9M Arachis hypogaea HOM05D008137 ORTHO05D010271 3.4e-07 61.2 50 64.0
arahy.Tifrunner.gnm1.ann1.B8XGRJ Arachis hypogaea HOM05D008137 ORTHO05D010271 3.4e-07 61.2 50 64.0
arahy.Tifrunner.gnm1.ann1.VBV8TV Arachis hypogaea HOM05D008137 ORTHO05D010271 3.4e-07 61.2 50 64.0
arahy.Tifrunner.gnm1.ann1.YK1T90 Arachis hypogaea HOM05D008137 ORTHO05D010271 3.4e-07 61.2 50 64.0
arahy.Tifrunner.gnm1.ann1.R7MZ5F Arachis hypogaea HOM05D007334 ORTHO05D011873 1.7e-06 58.9 59 54.2


User provided reference genes

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