Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 5.3e-53 210.7 101 100.0
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 3.8e-51 204.5 101 97.0
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 1.2e-49 199.5 101 93.1
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 6.0e-49 197.2 101 92.1
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 4.9e-43 177.6 100 81.0
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 6.5e-43 177.2 95 86.3
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 6.5e-43 177.2 95 86.3
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 6.5e-43 177.2 95 86.3
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 1.9e-42 175.6 100 81.0
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 3.2e-42 174.9 98 82.7
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 1.0e-40 169.9 100 79.0
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 2.3e-40 168.7 92 83.7
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 8.7e-40 166.8 94 79.8
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 1.5e-39 166.0 98 80.6
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 9.6e-39 163.3 94 80.9
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 9.6e-39 163.3 94 80.9
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 1.8e-37 159.1 98 75.5
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 5.3e-37 157.5 96 77.1
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 1.2e-36 156.4 99 73.7
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.0e-36 155.6 91 80.2
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.0e-36 155.6 96 76.0
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 2.6e-36 155.2 98 73.5
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 5.9e-36 154.1 96 76.0
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 5.9e-36 154.1 96 77.1
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 7.6e-36 153.7 91 79.1
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 7.6e-36 153.7 91 79.1
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.0e-35 153.3 79 86.1
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 1.0e-35 153.3 86 81.4
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.0e-35 153.3 98 71.4
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 1.0e-35 153.3 95 74.7
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 1.3e-35 152.9 96 74.0
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 1.3e-35 152.9 98 73.5
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.3e-35 152.9 95 75.8
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.7e-35 152.5 98 74.5
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.2e-35 152.1 95 72.6
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 2.2e-35 152.1 95 72.6
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 2.2e-35 152.1 93 76.3
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 2.2e-35 152.1 95 74.7
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.9e-35 151.8 96 76.0
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 3.8e-35 151.4 93 76.3
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 3.8e-35 151.4 94 75.5
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 5.0e-35 151.0 96 71.9
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 5.0e-35 151.0 87 80.5
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 6.5e-35 150.6 92 77.2
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 6.5e-35 150.6 98 72.4
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 6.5e-35 150.6 98 74.5
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 8.4e-35 150.2 96 74.0
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 1.1e-34 149.8 80 82.5
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.4e-34 149.4 91 76.9
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.4e-34 149.4 87 80.5
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.4e-34 149.4 87 80.5
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.4e-34 149.4 87 80.5
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 1.9e-34 149.1 95 72.6
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 3.2e-34 148.3 93 71.0
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 3.2e-34 148.3 95 73.7
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 3.2e-34 148.3 85 78.8
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 4.2e-34 147.9 96 71.9
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 4.2e-34 147.9 87 78.2
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 5.5e-34 147.5 87 78.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 9.3e-34 146.7 95 71.6
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.3e-34 146.7 98 69.4
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 9.3e-34 146.7 98 69.4
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 1.6e-33 146.0 85 78.8
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-33 146.0 93 73.1
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 3.5e-33 144.8 95 68.4
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.0e-32 143.3 91 74.7
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 1.0e-32 143.3 79 77.2
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 1.3e-32 142.9 81 75.3
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.8e-32 142.5 96 69.8
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.8e-32 142.5 96 69.8
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.8e-32 142.5 95 70.5
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 1.8e-32 142.5 80 78.8
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 1.8e-32 142.5 96 71.9
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 2.3e-32 142.1 79 78.5
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 2.3e-32 142.1 99 65.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 2.3e-32 142.1 80 78.8
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 3.0e-32 141.7 79 78.5
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 3.0e-32 141.7 97 69.1
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 3.0e-32 141.7 80 77.5
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 3.9e-32 141.4 91 70.3
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.9e-32 141.4 110 63.6
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 3.9e-32 141.4 78 78.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 5.1e-32 141.0 79 78.5
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 6.7e-32 140.6 66 95.5
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 6.7e-32 140.6 90 70.0
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 8.7e-32 140.2 79 77.2
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.3e-31 138.3 96 67.7
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 4.3e-31 137.9 77 77.9
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 4.3e-31 137.9 87 71.3
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 4.3e-31 137.9 87 71.3
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 4.3e-31 137.9 77 77.9
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 9.7e-31 136.7 76 78.9
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 9.7e-31 136.7 79 74.7
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 9.7e-31 136.7 94 68.1
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.3e-30 136.3 121 59.5
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 2.8e-30 135.2 86 75.6
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 6.3e-30 134.0 91 71.4
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 8.2e-30 133.7 80 71.2
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.8e-29 132.5 88 70.5
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 6.9e-29 130.6 77 72.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 9.0e-29 130.2 76 75.0
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 9.0e-29 130.2 79 70.9
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 9.0e-29 130.2 79 70.9
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 2.0e-28 129.0 75 73.3
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 3.4e-28 128.3 66 84.8
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 3.8e-27 124.8 68 82.4
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 6.5e-27 124.0 63 85.7
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 2.5e-26 122.1 82 68.3
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 5.5e-26 120.9 86 61.6
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 9.4e-26 120.2 85 67.1
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 2.3e-24 115.5 83 61.4
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 6.7e-24 114.0 72 72.2
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 8.8e-24 113.6 89 58.4
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.7e-22 109.4 63 76.2
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 4.8e-22 107.8 110 50.0
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 4.8e-22 107.8 91 59.3
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 8.2e-22 107.1 82 64.6
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 4.1e-21 104.8 63 74.6
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 5.3e-21 104.4 66 68.2
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.2e-20 103.2 62 74.2
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.5e-20 102.8 76 60.5
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.5e-20 102.8 53 81.1
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 3.8e-19 98.2 68 66.2
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 6.5e-19 97.4 63 66.7
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 3.2e-18 95.1 64 64.1
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 6.7e-16 87.4 60 66.7
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 7.4e-15 84.0 85 49.4
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 2.8e-14 82.0 80 50.0
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 3.7e-14 81.6 66 53.0
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 8.2e-14 80.5 59 64.4
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 2.4e-13 79.0 73 52.1
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 2.0e-12 75.9 46 69.6
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 2.0e-12 75.9 33 97.0
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 2.6e-12 75.5 63 60.3
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 5.9e-12 74.3 80 51.2
CBR_g29697 Chara braunii HOM05D035488 ORTHO05D007319 3.0e-08 62.0 74 44.6


User provided reference genes

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