Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g012725 Medicago truncatula HOM05D006799 ORTHO05D008391 4.7e-112 407.9 209 100.0
TPR.G11194 Trifolium pratense HOM05D006799 ORTHO05D008391 1.2e-96 356.7 211 87.2
Psat4g203520 Pisum sativum HOM05D006799 ORTHO05D008391 3.5e-91 338.6 210 82.4
VMungo0331G1591 Vigna mungo HOM05D006799 ORTHO05D008391 6.1e-80 301.2 203 75.4
Lj3g0009647 Lotus japonicus HOM05D006799 ORTHO05D008391 2.6e-78 295.8 207 76.3
Glyma.17G151300 Glycine max HOM05D006799 ORTHO05D008391 1.7e-77 293.1 203 73.9
Ca_23225_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 1.1e-76 290.4 167 86.8
arahy.Tifrunner.gnm1.ann1.AR5NL3 Arachis hypogaea HOM05D006799 ORTHO05D008391 1.3e-74 283.5 203 70.9
Lalb_Chr12g0209871 Lupinus albus HOM05D006799 ORTHO05D008391 3.9e-74 282.0 203 71.4
arahy.Tifrunner.gnm1.ann1.H272JM Arachis hypogaea HOM05D006799 ORTHO05D008391 1.9e-73 279.6 203 70.0
Phvul.010G021800 Phaseolus vulgaris HOM05D006799 ORTHO05D008391 2.1e-72 276.2 203 71.4
Haze_15251 Corylus avellana HOM05D006799 ORTHO05D008391 4.6e-59 231.9 185 64.3
Gorai.001G105200 Gossypium raimondii HOM05D006799 ORTHO05D008391 2.5e-57 226.1 189 63.0
Gohir.D07G097800 Gossypium hirsutum HOM05D006799 ORTHO05D008391 3.3e-57 225.7 189 63.0
TAR362G0955 Trochodendron aralioides HOM05D006799 ORTHO05D008391 4.3e-57 225.3 186 65.1
Dinv12648 Davidia involucrata HOM05D006799 ORTHO05D008391 9.5e-57 224.2 209 57.9
CSS0002557 Camellia sinensis var. sinensis HOM05D006799 ORTHO05D008391 2.1e-56 223.0 182 62.6
Thecc.01G219900 Theobroma cacao HOM05D006799 ORTHO05D008391 2.1e-56 223.0 177 65.5
QL09p051225 Quercus lobata HOM05D006799 ORTHO05D008391 3.6e-56 222.2 173 64.7
GSVIVG01003251001 Vitis vinifera HOM05D006799 ORTHO05D008391 4.7e-56 221.9 180 63.9
Sabra02G0187300 Salix brachista HOM05D006799 ORTHO05D008391 6.2e-56 221.5 185 61.1
Gohir.A07G093200 Gossypium hirsutum HOM05D006799 ORTHO05D008391 8.1e-56 221.1 189 61.4
Hma1.2p1_0226F.1_g095380 Hydrangea macrophylla HOM05D006799 ORTHO05D008391 1.4e-55 220.3 190 61.1
Lj1C89G17 Lonicera japonica HOM05D006799 ORTHO05D008391 2.3e-55 219.5 171 63.2
FAN24G0472 Fragaria x ananassa HOM05D004056 ORTHO05D008391 3.1e-55 219.2 167 61.7
Actinidia23709 Actinidia chinensis HOM05D006799 ORTHO05D008391 6.8e-55 218.0 172 62.2
Cfa004160 Carpinus fangiana HOM05D006799 ORTHO05D008391 1.5e-54 216.9 209 56.5
CiPaw.02G023800 Carya illinoinensis HOM05D006799 ORTHO05D008391 1.5e-54 216.9 176 60.2
FvH4_2g18530 Fragaria vesca HOM05D006799 ORTHO05D008391 1.5e-54 216.9 167 61.1
RcHm_v2.0_Chr6g0284091 Rosa chinensis HOM05D006799 ORTHO05D008391 1.5e-54 216.9 167 61.1
Duzib138G1661 Durio zibethinus HOM05D006799 ORTHO05D008391 2.0e-54 216.5 172 65.1
MD05G1171500 Malus domestica HOM05D006799 ORTHO05D008391 2.0e-54 216.5 177 58.8
Potri.002G246000 Populus trichocarpa HOM05D006799 ORTHO05D008391 2.6e-54 216.1 173 61.8
Rhsim01G0253200 Rhododendron simsii HOM05D006799 ORTHO05D008391 3.4e-54 215.7 176 64.2
COL.COLO4_15616 Corchorus olitorius HOM05D006799 ORTHO05D008391 4.4e-54 215.3 173 62.4
FAN15G2777 Fragaria x ananassa HOM05D004056 ORTHO05D008391 9.9e-54 214.2 210 51.9
MD10G1159700 Malus domestica HOM05D006799 ORTHO05D008391 1.7e-53 213.4 180 57.8
TWI18G0944 Tripterygium wilfordii HOM05D006799 ORTHO05D008391 3.7e-53 212.2 176 59.7
Peaxi162Scf00068g02310 Petunia axillaris HOM05D006799 ORTHO05D008391 4.9e-53 211.8 185 61.6
Sc17g0002120 Simmondsia chinensis HOM05D006799 ORTHO05D008391 4.9e-53 211.8 172 66.3
Sopen06g002680 Solanum pennellii HOM05D006799 ORTHO05D008391 4.9e-53 211.8 171 63.2
Solyc06g007800.4 Solanum lycopersicum HOM05D006799 ORTHO05D008391 8.3e-53 211.1 188 59.6
Aqoxy5G00028 Aquilegia oxysepala HOM05D006799 ORTHO05D008391 1.1e-52 210.7 170 63.5
Manes.13G049500 Manihot esculenta HOM05D006799 ORTHO05D008391 1.1e-52 210.7 169 64.5
Nitab4.5_0002641g0110 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.1e-52 210.7 179 60.3
Dinv19171 Davidia involucrata HOM05D006799 ORTHO05D008391 4.1e-52 208.8 175 61.1
CAN.G181.54 Capsicum annuum HOM05D006799 ORTHO05D008391 5.4e-52 208.4 191 58.1
Prupe.8G198800 Prunus persica HOM05D006799 ORTHO05D008391 1.6e-51 206.8 180 58.9
ClCG09G008610 Citrullus lanatus HOM05D006799 ORTHO05D008391 4.6e-51 205.3 188 55.3
PGR044G2699 Punica granatum HOM05D006799 ORTHO05D008391 6.0e-51 204.9 209 53.1
CANSAT01G3095 Cannabis sativa HOM05D006799 ORTHO05D008391 7.8e-51 204.5 189 56.6
CsaV3_7G026360 Cucumis sativus L. HOM05D006799 ORTHO05D008391 1.3e-50 203.8 193 53.9
Nitab4.5_0000045g0540 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.3e-50 203.8 191 59.7
Cc01_g16700 Coffea canephora HOM05D006799 ORTHO05D008391 1.7e-50 203.4 204 54.9
PGSC0003DMG400022033 Solanum tuberosum HOM05D006799 ORTHO05D008391 2.3e-50 203.0 188 55.9
Atru.chr6.1426 Acer truncatum HOM05D006799 ORTHO05D008391 5.1e-50 201.8 172 60.5
Sed0008494 Sechium edule HOM05D006799 ORTHO05D008391 8.6e-50 201.1 173 57.2
Ciclev10022385m.g Citrus clementina HOM05D006799 ORTHO05D008391 1.1e-49 200.7 185 57.8
Nitab4.5_0002616g0150 Nicotiana tabacum HOM05D006799 ORTHO05D008391 1.5e-49 200.3 191 56.5
vmacro14734 Vaccinium macrocarpon HOM05D006799 ORTHO05D008391 1.9e-49 199.9 230 48.7
MELO3C021082.2 Cucumis melo HOM05D006799 ORTHO05D008391 7.3e-49 198.0 202 53.0
Cpa.g.sc21.107 Carica papaya HOM05D006799 ORTHO05D008391 2.1e-48 196.4 185 56.8
SGA_v2.0_scaffold6G03220 Striga asiatica HOM05D006799 ORTHO05D008391 3.6e-48 195.7 162 60.5
DCAR_012670 Daucus carota HOM05D006799 ORTHO05D008391 8.1e-48 194.5 172 57.0
Lsat_1_v5_gn_8_89340 Lactuca sativa HOM05D006799 ORTHO05D008391 1.1e-47 194.1 178 56.2
MBI11_g07417_MAGBIO Magnolia biondii HOM05D006799 ORTHO05D008391 1.8e-47 193.4 174 56.9
Eucgr.K02137 Eucalyptus grandis HOM05D006799 ORTHO05D008391 3.1e-47 192.6 181 56.4
MSTRG.17994 Avicennia marina HOM05D006799 ORTHO05D008391 8.9e-47 191.0 186 54.3
EL10Ac5g12475 Beta vulgaris HOM05D006799 ORTHO05D008391 8.9e-47 191.0 177 57.1
Migut.N00632 Erythranthe guttata HOM05D006799 ORTHO05D008391 1.5e-46 190.3 198 51.5
SalBow3G4070 Salvia bowleyana HOM05D006799 ORTHO05D008391 7.6e-46 188.0 183 53.6
Hund05578 Selenicereus undatus HOM05D006799 ORTHO05D008391 9.9e-46 187.6 177 55.9
CDE05G2155 Ceratophyllum demersum HOM05D006799 ORTHO05D008391 1.9e-44 183.3 175 52.6
AUR62019885 Chenopodium quinoa HOM05D006799 ORTHO05D008391 3.2e-44 182.6 173 56.1
AUR62007023 Chenopodium quinoa HOM05D006799 ORTHO05D008391 4.2e-44 182.2 173 55.5
ECA236G1739 Erigeron canadensis HOM05D006799 ORTHO05D008391 2.1e-43 179.9 180 55.0
PSO063G5306 Papaver somniferum HOM05D006799 ORTHO05D008391 6.0e-43 178.3 175 53.7
unitig_0.g374 Utricularia gibba HOM05D006799 ORTHO05D008391 6.6e-42 174.9 161 54.7
Os04g0376100 Oryza sativa ssp. japonica HOM05D006799 ORTHO05D008391 1.4e-39 167.2 169 51.5
THA.LOC104804623 Tarenaya hassleriana HOM05D006799 ORTHO05D008391 3.1e-39 166.0 181 52.5
ATR0561G177 Amborella trichopoda HOM05D006799 ORTHO05D008391 7.6e-38 161.4 184 48.4
arahy.Tifrunner.gnm1.ann1.9RT6YB Arachis hypogaea HOM05D006799 ORTHO05D008391 1.7e-37 160.2 112 71.4
Aa31LG9G5010 Aethionema arabicum HOM05D006799 ORTHO05D008391 2.9e-37 159.5 182 52.7
HanXRQChr16g0500591 Helianthus annuus HOM05D006799 ORTHO05D008391 4.9e-37 158.7 179 50.8
Carub.0003s2545 Capsella rubella HOM05D006799 ORTHO05D008391 5.4e-36 155.2 194 46.4
Zm00001eb086040 Zea mays HOM05D006799 ORTHO05D008391 5.4e-36 155.2 167 50.9
BcaC06g35782 Brassica carinata HOM05D006799 ORTHO05D008391 1.2e-35 154.1 165 50.9
A07p07240 Brassica napus HOM05D006799 ORTHO05D008391 1.2e-35 154.1 165 49.7
BraA07t28510Z Brassica rapa HOM05D006799 ORTHO05D008391 2.1e-35 153.3 165 51.5
Thhalv10002682m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 2.7e-35 152.9 165 51.5
AT3G25120 Arabidopsis thaliana HOM05D006799 ORTHO05D008391 3.5e-35 152.5 164 53.0
CARHR101440 Cardamine hirsuta HOM05D006799 ORTHO05D008391 1.0e-34 151.0 207 42.5
AL3G40810 Arabidopsis lyrata HOM05D006799 ORTHO05D008391 1.3e-34 150.6 164 52.4
Ah.12g052960 Amaranthus hybridus HOM05D006799 ORTHO05D008391 2.3e-34 149.8 178 48.9
C07p10930 Brassica napus HOM05D006799 ORTHO05D008391 3.0e-34 149.4 166 50.6
BolC7t41559H Brassica oleracea HOM05D006799 ORTHO05D008391 3.0e-34 149.4 166 50.6
CARHR218390 Cardamine hirsuta HOM05D006799 ORTHO05D008391 8.7e-34 147.9 163 49.7
Sp3g22710 Schrenkiella parvula HOM05D006799 ORTHO05D008391 1.9e-33 146.7 177 48.0
BcaB03g16157 Brassica carinata HOM05D006799 ORTHO05D008391 3.3e-33 146.0 159 50.9
BcaC02g09450 Brassica carinata HOM05D006799 ORTHO05D008391 9.6e-33 144.4 159 50.3
A04p08990 Brassica napus HOM05D006799 ORTHO05D008391 2.8e-32 142.9 159 50.3
C04p42860 Brassica napus HOM05D006799 ORTHO05D008391 2.8e-32 142.9 159 50.3
BolC4t25853H Brassica oleracea HOM05D006799 ORTHO05D008391 2.8e-32 142.9 159 50.3
BraA04t16594Z Brassica rapa HOM05D006799 ORTHO05D008391 2.8e-32 142.9 159 50.3
BcaB06g26722 Brassica carinata HOM05D006799 ORTHO05D008391 2.0e-30 136.7 164 47.0
FAN27G1455 Fragaria x ananassa HOM05D006799 ORTHO05D008391 2.6e-30 136.3 116 57.8
Sc17g0002130 Simmondsia chinensis HOM05D006799 ORTHO05D008391 2.2e-29 133.3 89 73.0
Peaxi162Scf00372g01214 Petunia axillaris HOM05D006799 ORTHO05D008391 6.0e-27 125.2 111 57.7
SEGI_12663 Sequoiadendron giganteum HOM05D006799 ORTHO05D008391 1.3e-26 124.0 172 40.7
Thhalv10026882m.g Eutrema salsugineum HOM05D006799 ORTHO05D008391 3.3e-25 119.4 169 43.2
Mapoly0010s0131 Marchantia polymorpha HOM05D006799 ORTHO05D008391 1.5e-17 94.0 197 35.5
AagrBONN_evm.TU.Sc2ySwM_228.181 Anthoceros agrestis HOM05D006799 ORTHO05D008391 9.6e-17 91.3 184 36.4
Pp3c22_13870 Physcomitrium patens HOM05D006799 ORTHO05D008391 3.1e-15 86.3 182 33.0
Rhsim01G0253100 Rhododendron simsii HOM05D006799 ORTHO05D008391 1.1e-12 77.8 88 46.6
CBR_g52029 Chara braunii HOM05D006799 ORTHO05D008391 1.2e-11 74.3 230 29.1
Ca_19566_v3 Cicer arietinum L. HOM05D006799 ORTHO05D008391 2.7e-11 73.2 39 89.7


User provided reference genes

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