Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g011160 Medicago truncatula HOM05D007511 ORTHO05D003753 3.7e-83 311.6 172 100.0
Medtr8g010740 Medicago truncatula HOM05D007511 ORTHO05D003753 1.9e-50 203.0 125 96.8
Ca_23172_v3 Cicer arietinum L. HOM05D007511 ORTHO05D003753 9.3e-50 200.7 173 63.0
TPR.G24583 Trifolium pratense HOM05D007511 ORTHO05D003753 7.4e-47 191.0 140 70.7
Psat4g207240 Pisum sativum HOM05D007511 ORTHO05D003753 1.7e-43 179.9 134 69.4
Psat0s409g0080 Pisum sativum HOM05D007511 ORTHO05D003753 1.2e-41 173.7 124 70.2
Lj3g0008746 Lotus japonicus HOM05D007511 ORTHO05D003753 1.0e-35 154.1 137 60.6
Glyma.16G082300 Glycine max HOM05D007511 ORTHO05D003753 3.8e-27 125.6 136 55.9
Lalb_Chr07g0194541 Lupinus albus HOM05D007511 ORTHO05D003753 1.3e-24 117.1 137 50.4
Glyma.03G092200 Glycine max HOM05D007511 ORTHO05D003753 6.7e-24 114.8 135 53.3
MD02G1239600 Malus domestica HOM05D007511 ORTHO05D003753 5.7e-23 111.7 137 46.7
CiPaw.02G046500 Carya illinoinensis HOM05D007511 ORTHO05D003753 2.8e-22 109.4 136 44.1
TWI34G0987 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 6.3e-22 108.2 134 47.0
TWI60G1247 Tripterygium wilfordii HOM05D007511 ORTHO05D003753 1.1e-21 107.5 133 45.1
Prupe.2G098000 Prunus persica HOM05D007511 ORTHO05D003753 1.4e-21 107.1 135 43.0
MD07G1077000 Malus domestica HOM05D007511 ORTHO05D003753 2.4e-21 106.3 135 40.7
FAN01G1810 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.2e-18 95.9 142 35.9
Duzib177G0499 Durio zibethinus HOM05D007511 ORTHO05D003753 2.7e-17 92.8 140 39.3
Potri.019G043701 Populus trichocarpa HOM05D007511 ORTHO05D003753 4.7e-17 92.0 135 41.5
Nn1g08946 Nelumbo nucifera HOM05D001418 ORTHO05D003753 6.1e-17 91.7 142 38.0
Cfa000931 Carpinus fangiana HOM05D007511 ORTHO05D003753 7.9e-17 91.3 113 42.5
RcHm_v2.0_Chr1g0337051 Rosa chinensis HOM05D007511 ORTHO05D003753 7.9e-17 91.3 143 35.7
Thhalv10015688m.g Eutrema salsugineum HOM05D007511 ORTHO05D003753 1.0e-16 90.9 139 40.3
Sed0019168 Sechium edule HOM05D007511 ORTHO05D003753 1.8e-16 90.1 135 36.3
Sabra19G0054300 Salix brachista HOM05D007511 ORTHO05D003753 3.0e-16 89.4 135 43.7
TAR629G3237 Trochodendron aralioides HOM05D007511 ORTHO05D003753 3.0e-16 89.4 136 39.7
FAN03G1709 Fragaria x ananassa HOM05D007511 ORTHO05D003753 3.9e-16 89.0 142 34.5
Manes.08G158000 Manihot esculenta HOM05D007511 ORTHO05D003753 6.7e-16 88.2 66 56.1
PSO782G3115 Papaver somniferum HOM05D007511 ORTHO05D003753 6.7e-16 88.2 136 36.8
CsaV3_2G011030 Cucumis sativus L. HOM05D007511 ORTHO05D003753 2.6e-15 86.3 129 34.1
FvH4_7g07110 Fragaria vesca HOM05D007511 ORTHO05D003753 4.4e-15 85.5 144 36.1
FAN06G3938 Fragaria x ananassa HOM05D007511 ORTHO05D003753 4.4e-15 85.5 144 36.1
Ciclev10033674m.g Citrus clementina HOM05D007511 ORTHO05D003753 5.7e-15 85.1 137 38.0
PSO063G5504 Papaver somniferum HOM05D007511 ORTHO05D003753 7.4e-15 84.7 134 36.6
Duzib128G1432 Durio zibethinus HOM05D007511 ORTHO05D003753 9.7e-15 84.3 132 37.1
Sp6g26630 Schrenkiella parvula HOM05D007511 ORTHO05D003753 9.7e-15 84.3 140 37.1
FAN10G2279 Fragaria x ananassa HOM05D001937 ORTHO05D007024 1.3e-14 84.0 143 34.3
PGR004G1271 Punica granatum HOM05D007511 ORTHO05D003753 1.3e-14 84.0 133 37.6
Atru.chr2.1724 Acer truncatum HOM05D007511 ORTHO05D003753 1.7e-14 83.6 69 52.2
Nn3g19224 Nelumbo nucifera HOM05D007511 ORTHO05D003753 2.2e-14 83.2 130 37.7
Aa31LG11G12060 Aethionema arabicum HOM05D007511 ORTHO05D003753 3.7e-14 82.4 137 38.0
Carub.0006s1583 Capsella rubella HOM05D007511 ORTHO05D003753 3.7e-14 82.4 148 35.8
C02p09200 Brassica napus HOM05D007511 ORTHO05D003753 4.8e-14 82.0 131 37.4
Nn1g09148 Nelumbo nucifera HOM05D007511 ORTHO05D003753 4.8e-14 82.0 65 50.8
AT5G17590 Arabidopsis thaliana HOM05D007511 ORTHO05D003753 1.8e-13 80.1 141 36.9
Manes.12G158100 Manihot esculenta HOM05D001418 ORTHO05D003753 1.8e-13 80.1 130 35.4
BraA02t05399Z Brassica rapa HOM05D007511 ORTHO05D003753 2.4e-13 79.7 131 36.6
TAR381G0240 Trochodendron aralioides HOM05D001418 ORTHO05D004504 3.1e-13 79.3 146 36.3
A02p04350 Brassica napus HOM05D007511 ORTHO05D003753 9.1e-13 77.8 131 35.9
CARHR195590 Cardamine hirsuta HOM05D007511 ORTHO05D003753 9.1e-13 77.8 139 36.0
BcaB08g36759 Brassica carinata HOM05D007511 ORTHO05D003753 2.0e-12 76.6 141 36.2
A10p21820 Brassica napus HOM05D007511 ORTHO05D003753 2.0e-12 76.6 152 34.2
Gohir.D11G235550 Gossypium hirsutum HOM05D007511 ORTHO05D003753 4.5e-12 75.5 131 35.1
BolC9t58796H Brassica oleracea HOM05D007511 ORTHO05D003753 5.9e-12 75.1 141 35.5
Eucgr.D00980 Eucalyptus grandis HOM05D007511 ORTHO05D003753 5.9e-12 75.1 140 35.0
Phvul.010G032800 Phaseolus vulgaris HOM05D007511 ORTHO05D003753 5.9e-12 75.1 117 38.5
AL6G28680 Arabidopsis lyrata HOM05D007511 ORTHO05D003753 7.7e-12 74.7 146 33.6
Thecc.05G230200 Theobroma cacao HOM05D007511 ORTHO05D003753 7.7e-12 74.7 111 41.4
BraA10t44242Z Brassica rapa HOM05D007511 ORTHO05D003753 1.0e-11 74.3 152 33.6
BcaC03g13529 Brassica carinata HOM05D007511 ORTHO05D003753 1.7e-11 73.6 131 35.9
BolC2t06828H Brassica oleracea HOM05D007511 ORTHO05D003753 1.7e-11 73.6 131 35.9
BcaC04g18776 Brassica carinata HOM05D007511 ORTHO05D003753 2.9e-11 72.8 141 34.8
C09p59570 Brassica napus HOM05D007511 ORTHO05D003753 2.9e-11 72.8 141 34.8
Gorai.007G248300 Gossypium raimondii HOM05D007511 ORTHO05D003753 2.9e-11 72.8 131 35.1
Hma1.2p1_0353F.1_g133330 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 2.9e-11 72.8 107 38.3
THA.LOC104802898 Tarenaya hassleriana HOM05D007511 ORTHO05D003753 2.9e-11 72.8 138 35.5
Oeu032775.1 Olea europaea HOM05D007511 ORTHO05D003753 5.0e-11 72.0 66 47.0
Gohir.A11G221900 Gossypium hirsutum HOM05D007511 ORTHO05D003753 1.1e-10 70.9 132 34.1
Lalb_Chr13g0290981 Lupinus albus HOM05D007511 ORTHO05D003753 1.4e-10 70.5 138 37.7
Cpa.g.sc73.86 Carica papaya HOM05D007511 ORTHO05D003753 1.9e-10 70.1 134 35.8
MBI06_g35216_MAGBIO Magnolia biondii HOM05D007511 ORTHO05D003753 1.9e-10 70.1 63 50.8
TAR625G0656 Trochodendron aralioides HOM05D001418 ORTHO05D003753 2.5e-10 69.7 135 33.3
Oeu024951.1 Olea europaea HOM05D007511 ORTHO05D003753 3.2e-10 69.3 66 43.9
TAR628G0376 Trochodendron aralioides HOM05D001418 ORTHO05D003753 4.2e-10 68.9 64 46.9
Rhsim01G0134200 Rhododendron simsii HOM05D007511 ORTHO05D003753 5.5e-10 68.6 134 35.1
CANSAT35G2046 Cannabis sativa HOM05D007511 ORTHO05D003753 9.4e-10 67.8 65 50.8
Hma1.2p1_0915F.1_g236420 Hydrangea macrophylla HOM05D007511 ORTHO05D003753 3.6e-09 65.9 65 44.6
Rhsim01G0134700 Rhododendron simsii HOM05D000002 ORTHO05D000001 6.1e-09 65.1 134 33.6
Atru.chr4.944 Acer truncatum HOM05D001418 ORTHO05D003753 1.0e-08 64.3 64 46.9
Peaxi162Scf01343g00114 Petunia axillaris HOM05D007511 ORTHO05D003753 1.0e-08 64.3 148 31.8
HPP92_004456 Vanilla planifolia HOM05D001418 ORTHO05D003753 1.0e-08 64.3 127 35.4
Lsat_1_v5_gn_7_35641 Lactuca sativa HOM05D007511 ORTHO05D003753 1.4e-08 63.9 148 32.4
PGSC0003DMG400043768 Solanum tuberosum HOM05D007511 ORTHO05D003753 1.8e-08 63.5 68 42.6
PGR102G3103 Punica granatum HOM05D001418 ORTHO05D003753 2.3e-08 63.2 138 31.9
Sc06g0005400 Simmondsia chinensis HOM05D001418 ORTHO05D003753 2.3e-08 63.2 134 32.8
Sopen01g032800 Solanum pennellii HOM05D007511 ORTHO05D003753 2.3e-08 63.2 68 42.6
TWI79G1507 Tripterygium wilfordii HOM05D001418 ORTHO05D003753 3.9e-08 62.4 64 42.2
BolC3t13471H Brassica oleracea HOM05D007511 ORTHO05D003753 5.2e-08 62.0 64 42.2
Sc16g0009500 Simmondsia chinensis HOM05D001418 ORTHO05D003753 5.2e-08 62.0 64 42.2
ATR1001G015 Amborella trichopoda HOM05D007511 ORTHO05D003753 1.1e-07 60.8 141 30.5
Sed0024034 Sechium edule HOM05D001418 ORTHO05D003753 1.5e-07 60.5 62 43.5
TPR.G37392 Trifolium pratense HOM05D001418 ORTHO05D003753 1.5e-07 60.5 60 45.0
Ah.06g190930 Amaranthus hybridus HOM05D001418 ORTHO05D003753 2.0e-07 60.1 163 30.7
A03p08430 Brassica napus HOM05D007511 ORTHO05D003753 2.0e-07 60.1 64 40.6
BraA03t10166Z Brassica rapa HOM05D007511 ORTHO05D003753 2.0e-07 60.1 64 40.6
Eucgr.H05149 Eucalyptus grandis HOM05D001418 ORTHO05D003753 2.0e-07 60.1 64 45.3
Rhsim07G0046200 Rhododendron simsii HOM05D007511 ORTHO05D003753 2.0e-07 60.1 125 33.6
BcaB01g05209 Brassica carinata HOM05D007511 ORTHO05D003753 2.6e-07 59.7 64 40.6
C03p09830 Brassica napus HOM05D007511 ORTHO05D003753 2.6e-07 59.7 64 40.6
HanXRQChr04g0119711 Helianthus annuus HOM05D007511 ORTHO05D003753 3.3e-07 59.3 145 31.7
Nitab4.5_0004800g0110 Nicotiana tabacum HOM05D000001 ORTHO05D011953 3.3e-07 59.3 64 40.6
QL04p052194 Quercus lobata HOM05D007511 ORTHO05D003753 3.3e-07 59.3 89 43.8
Sopen10g009620 Solanum pennellii HOM05D007511 ORTHO05D025904 3.3e-07 59.3 68 41.2
MELO3C023225.2 Cucumis melo HOM05D001418 ORTHO05D003753 4.4e-07 58.9 62 43.5
Solyc10g024480.1 Solanum lycopersicum HOM05D007511 ORTHO05D003753 4.4e-07 58.9 68 41.2
Prupe.4G274100 Prunus persica HOM05D001418 ORTHO05D003753 5.7e-07 58.5 136 33.1
Ciclev10003211m.g Citrus clementina HOM05D001418 ORTHO05D003753 7.4e-07 58.2 62 45.2
Glyma.06G155400 Glycine max HOM05D001418 ORTHO05D003753 9.7e-07 57.8 62 40.3
vmacro13587 Vaccinium macrocarpon HOM05D007511 ORTHO05D003753 9.7e-07 57.8 141 30.5
HPP92_025164 Vanilla planifolia HOM05D001418 ORTHO05D003753 9.7e-07 57.8 63 39.7
HPP92_025177 Vanilla planifolia HOM05D001418 ORTHO05D003753 9.7e-07 57.8 63 39.7
ClCG02G000350 Citrullus lanatus HOM05D001418 ORTHO05D003753 1.3e-06 57.4 62 40.3
Migut.B01440 Erythranthe guttata HOM05D007511 ORTHO05D003753 1.3e-06 57.4 66 33.3
Sed0004234 Sechium edule HOM05D001418 ORTHO05D003753 2.2e-06 56.6 62 41.9
Aqoxy5G00551 Aquilegia oxysepala HOM05D007511 ORTHO05D003753 2.8e-06 56.2 130 30.0
Potri.005G066500 Populus trichocarpa HOM05D001418 ORTHO05D003753 4.8e-06 55.5 60 46.7
Sabra07G0084500 Salix brachista HOM05D001418 ORTHO05D003753 4.8e-06 55.5 65 44.6
CsaV3_2G019490 Cucumis sativus L. HOM05D001418 ORTHO05D003753 6.3e-06 55.1 62 37.1
CDE02G0326 Ceratophyllum demersum HOM05D007511 ORTHO05D003753 8.2e-06 54.7 63 41.3


User provided reference genes

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