Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 3.1e-119 431.8 216 100.0
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 3.4e-49 199.1 119 88.2
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 3.8e-48 195.7 147 74.8
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 5.1e-45 185.3 149 69.1
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 6.6e-45 184.9 145 69.0
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 8.6e-45 184.5 153 68.6
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 3.3e-44 182.6 145 69.7
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 3.3e-44 182.6 147 69.4
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 5.6e-44 181.8 119 81.5
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 2.1e-43 179.9 144 68.8
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.1e-42 177.6 145 68.3
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.8e-42 176.8 171 59.6
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 4.0e-42 175.6 172 59.3
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 3.9e-37 159.1 144 58.3
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.3e-35 154.1 139 61.9
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 1.3e-35 154.1 149 58.4
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 2.8e-35 152.9 145 57.2
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 8.1e-35 151.4 139 59.0
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 1.1e-34 151.0 143 57.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 1.1e-34 151.0 119 70.6
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 3.1e-34 149.4 155 53.5
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 3.1e-34 149.4 137 58.4
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 5.3e-34 148.7 134 59.0
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.2e-33 147.5 139 59.0
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 2.0e-33 146.7 153 56.2
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 2.0e-33 146.7 140 59.3
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 2.0e-33 146.7 126 64.3
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 2.6e-33 146.4 143 55.9
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 4.5e-33 145.6 139 56.1
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 4.5e-33 145.6 152 53.3
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 9.9e-33 144.4 136 59.6
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 9.9e-33 144.4 136 59.6
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 9.9e-33 144.4 136 59.6
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 9.9e-33 144.4 150 54.7
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 1.3e-32 144.1 143 55.9
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.7e-32 143.7 145 53.8
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 2.2e-32 143.3 143 55.9
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 2.2e-32 143.3 137 55.5
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 2.9e-32 142.9 150 54.7
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 2.9e-32 142.9 139 59.0
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 2.9e-32 142.9 139 58.3
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 3.8e-32 142.5 130 60.0
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 6.4e-32 141.7 139 56.1
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 6.4e-32 141.7 137 54.0
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 8.4e-32 141.4 139 59.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 8.4e-32 141.4 198 44.9
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 1.4e-31 140.6 232 41.8
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 1.4e-31 140.6 139 58.3
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 1.9e-31 140.2 136 54.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 1.9e-31 140.2 139 57.6
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 1.9e-31 140.2 138 55.8
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.4e-31 139.8 136 56.6
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 2.4e-31 139.8 139 57.6
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 3.2e-31 139.4 136 55.1
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 3.2e-31 139.4 148 51.4
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 4.2e-31 139.0 138 55.1
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 9.3e-31 137.9 136 58.1
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 2.1e-30 136.7 137 55.5
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 2.7e-30 136.3 145 51.7
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 4.6e-30 135.6 144 53.5
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.0e-29 134.4 138 52.9
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 1.0e-29 134.4 138 55.8
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.3e-29 134.0 138 55.1
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.3e-29 134.0 136 55.1
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 1.3e-29 134.0 138 53.6
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 1.3e-29 134.0 143 53.8
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-29 134.0 144 52.1
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 2.3e-29 133.3 135 54.1
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 2.3e-29 133.3 138 54.3
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 3.9e-29 132.5 146 50.0
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 6.7e-29 131.7 143 51.0
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 6.7e-29 131.7 138 51.4
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 8.7e-29 131.3 143 51.0
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 8.7e-29 131.3 146 48.6
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 1.1e-28 131.0 138 52.2
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.9e-28 130.2 143 49.7
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 1.9e-28 130.2 137 48.9
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 2.5e-28 129.8 143 50.3
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 2.5e-28 129.8 134 53.7
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 3.3e-28 129.4 143 51.0
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 3.3e-28 129.4 143 51.0
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 3.3e-28 129.4 143 51.7
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 4.3e-28 129.0 136 53.7
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 7.4e-28 128.3 138 51.4
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 9.6e-28 127.9 144 50.7
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.6e-27 127.1 143 51.0
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 1.6e-27 127.1 143 51.0
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 2.1e-27 126.7 135 53.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 3.6e-27 125.9 143 49.7
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.6e-27 125.9 135 51.1
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.6e-27 125.9 135 51.1
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.6e-27 125.9 135 51.1
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.6e-27 125.9 135 51.1
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 3.6e-27 125.9 135 51.1
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 4.8e-27 125.6 143 51.0
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 6.2e-27 125.2 131 51.9
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 8.1e-27 124.8 135 53.3
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.8e-26 123.6 143 49.0
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 1.8e-26 123.6 143 50.3
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.8e-26 123.6 137 49.6
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 1.5e-25 120.6 153 45.1
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 3.8e-24 115.9 128 48.4
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 1.1e-20 104.4 138 43.5
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 7.4e-20 101.7 140 40.7
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 1.3e-19 100.9 127 44.9
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 2.1e-19 100.1 208 32.2
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 3.7e-19 99.4 144 41.0
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 1.4e-18 97.4 205 35.6
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 4.0e-18 95.9 143 39.2
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 6.9e-18 95.1 111 51.4
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.6e-17 93.2 102 51.0
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 4.2e-15 85.9 88 59.1
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 4.8e-11 72.4 69 50.7
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 1.4e-10 70.9 146 35.6
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 3.1e-10 69.7 62 56.5
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 3.1e-10 69.7 62 56.5
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 4.5e-09 65.9 44 72.7
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.6e-06 57.4 45 66.7


User provided reference genes

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