Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr8g007345 Medicago truncatula HOM05D006213 ORTHO05D008107 6.6e-290 1000.0 495 100.0
Psat4g223120 Pisum sativum HOM05D006213 ORTHO05D008107 8.9e-263 909.8 492 90.0
Glyma.03G108200 Glycine max HOM05D006213 ORTHO05D008107 5.3e-247 857.4 498 83.3
Lalb_Chr12g0210581 Lupinus albus HOM05D006213 ORTHO05D008107 1.9e-244 849.0 489 83.4
arahy.Tifrunner.gnm1.ann1.SKJX1Q Arachis hypogaea HOM05D006213 ORTHO05D008107 3.0e-242 841.6 491 81.5
Phvul.010G045600 Phaseolus vulgaris HOM05D006213 ORTHO05D008107 3.9e-242 841.3 491 82.5
Lj3g0010513 Lotus japonicus HOM05D006213 ORTHO05D008107 1.3e-240 836.3 460 86.7
TPR.G32127 Trifolium pratense HOM05D006213 ORTHO05D008107 3.2e-236 821.6 518 80.9
CiPaw.13G025000 Carya illinoinensis HOM05D006213 ORTHO05D008107 1.4e-212 743.0 490 72.9
QL04p029079 Quercus lobata HOM05D006213 ORTHO05D008107 9.4e-212 740.3 492 72.4
Dinv44047 Davidia involucrata HOM05D006213 ORTHO05D008107 1.5e-209 733.0 490 70.6
Gohir.A08G139600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.0e-206 722.6 490 70.8
Gorai.004G166900 Gossypium raimondii HOM05D006213 ORTHO05D008107 2.0e-206 722.6 490 70.6
RcHm_v2.0_Chr1g0346061 Rosa chinensis HOM05D006213 ORTHO05D008107 2.0e-206 722.6 492 71.7
Thecc.01G397800 Theobroma cacao HOM05D006213 ORTHO05D008107 2.0e-206 722.6 490 70.6
Gohir.D08G160600 Gossypium hirsutum HOM05D006213 ORTHO05D008107 2.9e-205 718.8 490 70.2
ClCG06G000670 Citrullus lanatus HOM05D006213 ORTHO05D008107 1.4e-204 716.5 489 69.7
Glyma.07G119300 Glycine max HOM05D006213 ORTHO05D008107 3.2e-204 715.3 395 85.6
CsaV3_6G006460 Cucumis sativus L. HOM05D006213 ORTHO05D008107 2.1e-203 712.6 489 69.5
Manes.05G056250 Manihot esculenta HOM05D006213 ORTHO05D008107 2.1e-203 712.6 493 70.0
Sed0013772 Sechium edule HOM05D006213 ORTHO05D008107 2.1e-203 712.6 491 69.5
Ciclev10019843m.g Citrus clementina HOM05D006213 ORTHO05D008107 1.8e-202 709.5 492 69.7
Duzib133G0253 Durio zibethinus HOM05D006213 ORTHO05D008107 2.3e-202 709.1 482 71.0
MSTRG.20674 Avicennia marina HOM05D006213 ORTHO05D008107 3.0e-202 708.8 493 69.4
Potri.002G139200 Populus trichocarpa HOM05D006213 ORTHO05D008107 1.3e-200 703.4 491 68.6
COL.COLO4_12385 Corchorus olitorius HOM05D006213 ORTHO05D008107 4.8e-200 701.4 467 72.2
ECA234G2079 Erigeron canadensis HOM05D006213 ORTHO05D008107 1.3e-197 693.3 488 68.0
SalBow5G4694 Salvia bowleyana HOM05D006213 ORTHO05D008107 5.0e-197 691.4 493 68.4
AL1G10080 Arabidopsis lyrata HOM05D006213 ORTHO05D008107 8.5e-197 690.6 487 67.1
HanXRQChr17g0562541 Helianthus annuus HOM05D006213 ORTHO05D008107 5.5e-196 688.0 490 67.6
Lj2g0022411 Lotus japonicus HOM05D006213 ORTHO05D008107 5.5e-196 688.0 397 82.9
Carub.0001s0002 Capsella rubella HOM05D006213 ORTHO05D008107 1.6e-195 686.4 487 66.7
CARHR000180 Cardamine hirsuta HOM05D006213 ORTHO05D008107 1.6e-195 686.4 487 66.5
Prupe.2G122100 Prunus persica HOM05D006213 ORTHO05D008107 1.6e-195 686.4 467 70.9
PGR042G3832 Punica granatum HOM05D006213 ORTHO05D008107 2.7e-195 685.6 483 69.2
Lsat_1_v5_gn_4_39261 Lactuca sativa HOM05D006213 ORTHO05D008107 3.6e-195 685.3 488 68.6
GSVIVG01018298001 Vitis vinifera HOM05D006213 ORTHO05D008107 1.0e-194 683.7 467 70.4
Migut.B01508 Erythranthe guttata HOM05D006213 ORTHO05D008107 1.8e-194 682.9 493 67.5
CAN.G1585.8 Capsicum annuum HOM05D006213 ORTHO05D008107 2.3e-194 682.6 483 66.7
CANSAT25G1963 Cannabis sativa HOM05D006213 ORTHO05D008107 1.2e-193 680.2 491 67.0
TWI14G1148 Tripterygium wilfordii HOM05D006213 ORTHO05D008107 1.2e-193 680.2 487 67.8
Sp1g00110 Schrenkiella parvula HOM05D006213 ORTHO05D008107 1.5e-193 679.9 487 67.1
Actinidia30939 Actinidia chinensis HOM05D006213 ORTHO05D008107 2.8e-192 675.6 471 69.2
BraA10t42287Z Brassica rapa HOM05D006213 ORTHO05D008107 3.7e-192 675.2 494 65.2
A10p00090 Brassica napus HOM05D006213 ORTHO05D008107 4.8e-192 674.9 494 65.2
C05p00060 Brassica napus HOM05D006213 ORTHO05D008107 1.1e-191 673.7 488 65.6
BolC5t28793H Brassica oleracea HOM05D006213 ORTHO05D008107 1.1e-191 673.7 488 65.6
Solyc01g089900.4 Solanum lycopersicum HOM05D006213 ORTHO05D008107 1.8e-191 672.9 490 64.9
Eucgr.E01545 Eucalyptus grandis HOM05D006213 ORTHO05D008107 2.4e-191 672.5 489 65.8
MELO3C022474.2 Cucumis melo HOM05D006213 ORTHO05D008107 3.1e-191 672.2 455 70.5
FAN06G2734 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.3e-191 671.4 507 65.1
FAN06G3851 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.3e-191 671.4 507 65.1
FAN06G4345 Fragaria x ananassa HOM05D006213 ORTHO05D008107 5.3e-191 671.4 507 65.1
Aqoxy3G02673 Aquilegia oxysepala HOM05D006213 ORTHO05D008107 1.0e-189 667.2 493 63.9
Oeu037443.2 Olea europaea HOM05D006213 ORTHO05D008107 3.8e-189 665.2 467 67.9
FAN03G1287 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.5e-189 664.5 509 65.4
BraA09t42282Z Brassica rapa HOM05D006213 ORTHO05D008107 8.5e-189 664.1 492 64.8
Sabra02G0108200 Salix brachista HOM05D006213 ORTHO05D008107 2.5e-188 662.5 542 61.8
Aa31LG1G11550 Aethionema arabicum HOM05D006213 ORTHO05D008107 4.7e-187 658.3 518 60.6
FvH4_7g09360 Fragaria vesca HOM05D006213 ORTHO05D008107 6.1e-187 657.9 492 65.7
Sabra02G0108400 Salix brachista HOM05D006213 ORTHO05D008107 8.0e-187 657.5 542 61.3
Sc23g0004890 Simmondsia chinensis HOM05D006213 ORTHO05D008107 8.0e-187 657.5 490 63.5
MBI04_g13842_MAGBIO Magnolia biondii HOM05D006213 ORTHO05D008107 1.8e-186 656.4 496 63.5
BcaC07g42440 Brassica carinata HOM05D006213 ORTHO05D008107 2.0e-185 652.9 489 63.6
Nn1g00791 Nelumbo nucifera HOM05D006213 ORTHO05D008107 3.4e-185 652.1 490 62.7
PSO017G1536 Papaver somniferum HOM05D006213 ORTHO05D008107 7.5e-185 651.0 489 62.4
THA.LOC104814061 Tarenaya hassleriana HOM05D006213 ORTHO05D008107 1.3e-184 650.2 492 64.2
PSO837G0013 Papaver somniferum HOM05D006213 ORTHO05D008107 1.1e-183 647.1 489 62.6
CDE02G2871 Ceratophyllum demersum HOM05D006213 ORTHO05D008107 1.3e-181 640.2 474 62.2
AT1G02145 Arabidopsis thaliana HOM05D006213 ORTHO05D008107 1.1e-180 637.1 452 66.6
MD07G1098100 Malus domestica HOM05D006213 ORTHO05D008107 5.2e-178 628.2 436 70.6
HPP92_020680 Vanilla planifolia HOM05D006213 ORTHO05D008107 4.4e-177 625.2 485 61.2
Os04g0544900 Oryza sativa ssp. japonica HOM05D006213 ORTHO05D008107 2.0e-174 616.3 492 58.9
ATR0665G630 Amborella trichopoda HOM05D006213 ORTHO05D008107 3.5e-174 615.5 481 61.5
A09p69370 Brassica napus HOM05D006213 ORTHO05D008107 1.3e-173 613.6 499 60.5
AUR62013761 Chenopodium quinoa HOM05D006213 ORTHO05D008107 2.9e-173 612.5 522 56.9
vmacro13511 Vaccinium macrocarpon HOM05D006213 ORTHO05D008107 3.3e-172 609.0 599 53.8
VMungo0331G0117 Vigna mungo HOM05D006213 ORTHO05D008107 2.8e-171 605.9 684 50.9
SGA_v2.0_scaffold52G19244 Striga asiatica HOM05D006213 ORTHO05D008107 2.6e-169 599.4 473 63.6
Zm00001eb075160 Zea mays HOM05D006213 ORTHO05D008107 2.9e-168 595.9 494 56.5
Peaxi162Scf00853g00316 Petunia axillaris HOM05D006213 ORTHO05D008107 6.4e-168 594.7 497 59.8
Nitab4.5_0004837g0040 Nicotiana tabacum HOM05D006213 ORTHO05D008107 1.8e-167 593.2 531 57.3
BcaB03g13635 Brassica carinata HOM05D006213 ORTHO05D008107 9.2e-167 590.9 487 59.8
Hund17106 Selenicereus undatus HOM05D006213 ORTHO05D008107 9.2e-167 590.9 490 58.6
Thhalv10007459m.g Eutrema salsugineum HOM05D006213 ORTHO05D008107 3.9e-165 585.5 409 68.5
BolC8t52928H Brassica oleracea HOM05D006213 ORTHO05D008107 8.6e-157 557.8 507 56.2
Sopen01g035740 Solanum pennellii HOM05D006213 ORTHO05D008107 2.8e-155 552.7 408 63.7
FAN10G1434 Fragaria x ananassa HOM05D006213 ORTHO05D008107 2.3e-154 549.7 426 63.6
AUR62023393 Chenopodium quinoa HOM05D006213 ORTHO05D008107 1.1e-151 540.8 512 51.8
Mapoly0044s0100 Marchantia polymorpha HOM05D006213 ORTHO05D008107 3.2e-143 512.7 468 54.7
EL10Ac1g00745 Beta vulgaris HOM05D006213 ORTHO05D008107 5.4e-143 511.9 489 53.2
AagrBONN_evm.TU.Sc2ySwM_344.5349 Anthoceros agrestis HOM05D006213 ORTHO05D008107 4.3e-140 502.3 481 52.0
Haze_02866 Corylus avellana HOM05D006213 ORTHO05D008107 3.8e-136 489.2 532 51.9
Pp3c18_21620 Physcomitrium patens HOM05D006213 ORTHO05D008107 9.3e-135 484.6 480 49.6
unitig_8.g3848 Utricularia gibba HOM05D006213 ORTHO05D008107 1.3e-133 480.7 482 52.7
PGSC0003DMG402031172 Solanum tuberosum HOM05D006213 ORTHO05D008107 1.7e-133 480.3 327 69.4
TAR374G1216 Trochodendron aralioides HOM05D006213 ORTHO05D008107 5.3e-130 468.8 330 68.8
Cc02_g25210 Coffea canephora HOM05D006213 ORTHO05D008107 1.2e-126 457.6 379 60.9
SMO117G0345 Selaginella moellendorffii HOM05D006213 ORTHO05D008107 3.3e-124 449.5 427 51.5
BcaC07g42336 Brassica carinata HOM05D006213 ORTHO05D008107 4.8e-115 419.1 469 49.9
Lj9A554T27 Lonicera japonica HOM05D006213 ORTHO05D008107 6.2e-115 418.7 302 66.9
Nitab4.5_0000563g0240 Nicotiana tabacum HOM05D006213 ORTHO05D008107 4.1e-106 389.4 985 29.6
Sabra02G0107000 Salix brachista HOM05D006213 ORTHO05D008107 3.2e-103 379.8 345 56.2
SGA_v2.0_scaffold340G49332 Striga asiatica HOM05D006213 ORTHO05D008107 5.5e-103 379.0 500 44.8
Rhsim07G0037600 Rhododendron simsii HOM05D006213 ORTHO05D008107 1.6e-94 350.9 433 46.2
Atru.chr5.108 Acer truncatum HOM05D006213 ORTHO05D008107 1.7e-83 314.3 251 62.9
FAN01G1024 Fragaria x ananassa HOM05D006213 ORTHO05D008107 7.7e-73 278.9 199 68.8
MCO12G031 Micromonas commoda HOM05D006213 ORTHO05D008107 7.7e-73 278.9 552 34.1
SHI13624 Sapria himalayana HOM05D006213 ORTHO05D008107 2.9e-72 276.9 307 49.8
PRCOL_00003622 Prasinoderma coloniale HOM05D006213 ORTHO05D008107 2.2e-67 260.8 495 36.0
arahy.Tifrunner.gnm1.ann1.RXQ5U4 Arachis hypogaea HOM05D006213 ORTHO05D008107 8.9e-61 238.8 160 74.4
FAN06G1264 Fragaria x ananassa HOM05D006213 ORTHO05D008107 1.5e-60 238.0 199 60.8
SEGI_13726 Sequoiadendron giganteum HOM05D006213 ORTHO05D008107 5.9e-57 226.1 183 56.3
DCAR_029492 Daucus carota HOM05D006213 ORTHO05D008107 1.3e-56 224.9 161 66.5
Ca_14798_v3 Cicer arietinum L. HOM05D006213 ORTHO05D008107 8.9e-45 185.7 117 80.3
Cc02_g25230 Coffea canephora HOM05D006213 ORTHO05D008107 3.4e-36 157.1 107 60.7
SHI13625 Sapria himalayana HOM05D006213 ORTHO05D008107 5.1e-32 143.3 149 49.0
Psat4g223040 Pisum sativum HOM05D006213 ORTHO05D008107 2.6e-28 131.0 79 87.3
DCAR_029493 Daucus carota HOM05D006213 ORTHO05D008107 6.0e-25 119.8 64 81.2
Psat5g245640 Pisum sativum HOM05D000300 ORTHO05D000383 1.2e-20 105.5 66 81.8
arahy.Tifrunner.gnm1.ann1.PL2W5K Arachis hypogaea HOM05D006213 ORTHO05D008107 1.3e-19 102.1 76 61.8
FAN06G1132 Fragaria x ananassa HOM05D006213 ORTHO05D008107 6.0e-17 93.2 137 40.9
TPR.G39431 Trifolium pratense HOM05D006213 ORTHO05D008107 1.8e-13 81.6 45 80.0
Migut.B01510 Erythranthe guttata HOM05D006213 ORTHO05D003423 1.5e-12 78.6 43 83.7
Atru.chr5.109 Acer truncatum HOM05D006213 ORTHO05D000044 2.4e-10 71.2 42 76.2
Cpa.g.sc42.125 Carica papaya HOM05D005919 ORTHO05D007176 1.5e-07 62.0 210 25.2
Aqoxy7G03239_Aqoxy7G03240 Aquilegia oxysepala HOM05D005919 ORTHO05D007176 3.3e-07 60.8 107 30.8
Haze_22168 Corylus avellana HOM05D005919 ORTHO05D007176 4.3e-07 60.5 101 33.7
arahy.Tifrunner.gnm1.ann1.7FR1J2 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.6e-07 60.1 217 28.1
arahy.Tifrunner.gnm1.ann1.L1AVC7 Arachis hypogaea HOM05D005919 ORTHO05D007176 5.6e-07 60.1 217 28.1
Cfa013547 Carpinus fangiana HOM05D005919 ORTHO05D007176 7.4e-07 59.7 101 32.7
Cc02_g25220 Coffea canephora HOM05D006213 ORTHO05D008107 7.4e-07 59.7 48 62.5
Rhsim01G0012200 Rhododendron simsii HOM05D005919 ORTHO05D007176 7.4e-07 59.7 106 32.1
Lj9A728G22 Lonicera japonica HOM05D005919 ORTHO05D007176 1.6e-06 58.5 116 30.2
PSO063G4858 Papaver somniferum HOM05D005919 ORTHO05D007176 1.6e-06 58.5 101 32.7
Sed0019098 Sechium edule HOM05D005919 ORTHO05D007176 2.1e-06 58.2 192 25.0
TAR383G0301 Trochodendron aralioides HOM05D005919 ORTHO05D007176 2.1e-06 58.2 101 32.7
Pp3c10_23620 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.8e-06 57.8 238 26.1
Pp3c10_23630 Physcomitrium patens HOM05D005919 ORTHO05D007176 2.8e-06 57.8 238 26.1
arahy.Tifrunner.gnm1.ann1.KJ1SMN Arachis hypogaea HOM05D005919 ORTHO05D007176 3.7e-06 57.4 217 27.6
Mapoly0152s0016 Marchantia polymorpha HOM05D005919 ORTHO05D007176 4.8e-06 57.0 225 22.7
THA.LOC104819083 Tarenaya hassleriana HOM05D005919 ORTHO05D007176 4.8e-06 57.0 211 26.1
FAN17G2955 Fragaria x ananassa HOM05D005919 ORTHO05D007176 6.2e-06 56.6 101 31.7
QL02p095651 Quercus lobata HOM05D005919 ORTHO05D007176 8.1e-06 56.2 101 32.7


User provided reference genes

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