Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g105800 Medicago truncatula HOM05D006689 ORTHO05D008349 1.3e-182 642.9 316 100.0
Psat3g030240 Pisum sativum HOM05D006689 ORTHO05D008349 1.7e-121 439.9 269 81.8
TPR.G23318 Trifolium pratense HOM05D006689 ORTHO05D008349 2.9e-118 429.1 269 81.0
Lj1g0003895 Lotus japonicus HOM05D006689 ORTHO05D008349 3.4e-114 415.6 257 80.9
Lalb_Chr20g0111471 Lupinus albus HOM05D006689 ORTHO05D008349 6.4e-105 384.8 235 77.4
Lalb_Chr01g0017911 Lupinus albus HOM05D006689 ORTHO05D008349 1.1e-101 374.0 235 74.0
arahy.Tifrunner.gnm1.ann1.YAPI8V Arachis hypogaea HOM05D006689 ORTHO05D008349 1.9e-101 373.2 248 70.6
MD14G1035800 Malus domestica HOM05D006689 ORTHO05D008349 7.3e-93 344.7 237 67.5
FvH4_6g19910 Fragaria vesca HOM05D006689 ORTHO05D008349 8.1e-92 341.3 237 66.2
Aa31LG3G5030 Aethionema arabicum HOM05D006689 ORTHO05D008349 1.8e-91 340.1 237 65.4
BcaB04g18654 Brassica carinata HOM05D006689 ORTHO05D008349 1.8e-91 340.1 235 66.4
AL3G23170 Arabidopsis lyrata HOM05D006689 ORTHO05D008349 5.2e-91 338.6 237 65.8
GSVIVG01033928001 Vitis vinifera HOM05D006689 ORTHO05D008349 5.2e-91 338.6 237 67.9
QL07p037513 Quercus lobata HOM05D006689 ORTHO05D008349 6.8e-91 338.2 248 65.3
Sp3g09850 Schrenkiella parvula HOM05D006689 ORTHO05D008349 6.8e-91 338.2 235 66.8
PGR004G2039 Punica granatum HOM05D006689 ORTHO05D008349 1.2e-90 337.4 241 64.3
RcHm_v2.0_Chr3g0475311 Rosa chinensis HOM05D006689 ORTHO05D008349 1.2e-90 337.4 237 65.8
TAR633G1471 Trochodendron aralioides HOM05D006689 ORTHO05D008349 2.0e-90 336.7 242 64.9
CANSAT64G2446 Cannabis sativa HOM05D006689 ORTHO05D008349 2.6e-90 336.3 242 66.5
A03p37220 Brassica napus HOM05D006689 ORTHO05D008349 3.4e-90 335.9 236 64.8
Potri.016G072700 Populus trichocarpa HOM05D006689 ORTHO05D008349 3.4e-90 335.9 242 66.1
AT3G11620 Arabidopsis thaliana HOM05D006689 ORTHO05D008349 4.4e-90 335.5 237 65.4
arahy.Tifrunner.gnm1.ann1.ZIE5B9 Arachis hypogaea HOM05D006689 ORTHO05D008349 7.6e-90 334.7 248 64.9
QL07p037495 Quercus lobata HOM05D006689 ORTHO05D008349 7.6e-90 334.7 241 67.2
CARHR086170 Cardamine hirsuta HOM05D006689 ORTHO05D008349 9.9e-90 334.3 237 65.4
Prupe.7G098300 Prunus persica HOM05D006689 ORTHO05D008349 9.9e-90 334.3 238 65.5
BraA03t12881Z Brassica rapa HOM05D006689 ORTHO05D008349 1.3e-89 334.0 237 65.0
Thhalv10021180m.g Eutrema salsugineum HOM05D006689 ORTHO05D008349 2.9e-89 332.8 237 64.6
Eucgr.A02606 Eucalyptus grandis HOM05D006689 ORTHO05D008349 3.2e-88 329.3 246 60.6
C03p45070 Brassica napus HOM05D006689 ORTHO05D008349 4.2e-88 328.9 236 63.6
Aqoxy4G02685 Aquilegia oxysepala HOM05D006689 ORTHO05D008349 5.4e-88 328.6 234 62.4
Atru.chr8.1397 Acer truncatum HOM05D006689 ORTHO05D008349 7.1e-88 328.2 242 65.3
CSS0035173 Camellia sinensis var. sinensis HOM05D006689 ORTHO05D008349 7.1e-88 328.2 234 64.1
FAN14G3242 Fragaria x ananassa HOM05D006689 ORTHO05D008349 9.3e-88 327.8 227 67.0
BcaC01g04099 Brassica carinata HOM05D006689 ORTHO05D008349 1.2e-87 327.4 236 63.1
TWI74G1155 Tripterygium wilfordii HOM05D006689 ORTHO05D008349 1.2e-87 327.4 237 64.1
Carub.0003s1094 Capsella rubella HOM05D006689 ORTHO05D008349 1.6e-87 327.0 237 63.3
Gohir.D04G095300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.6e-87 327.0 279 57.0
C05p56320 Brassica napus HOM05D006689 ORTHO05D008349 4.6e-87 325.5 235 64.3
BolC5t34296H Brassica oleracea HOM05D006689 ORTHO05D008349 4.6e-87 325.5 235 64.3
FAN02G4476 Fragaria x ananassa HOM05D006689 ORTHO05D008349 7.8e-87 324.7 227 66.1
Cfa016668 Carpinus fangiana HOM05D006689 ORTHO05D008349 1.0e-86 324.3 226 66.4
Actinidia32058 Actinidia chinensis HOM05D006689 ORTHO05D008349 3.0e-86 322.8 241 61.8
A05p37720 Brassica napus HOM05D006689 ORTHO05D008349 3.9e-86 322.4 235 63.4
FAN05G1672 Fragaria x ananassa HOM05D006689 ORTHO05D008349 6.6e-86 321.6 227 65.6
BraA05t22567Z Brassica rapa HOM05D006689 ORTHO05D008349 1.1e-85 320.9 235 63.4
Duzib106G1273 Durio zibethinus HOM05D006689 ORTHO05D008349 1.1e-85 320.9 237 62.0
MD12G1034600 Malus domestica HOM05D006689 ORTHO05D008349 1.5e-85 320.5 227 65.6
Phvul.001G194040 Phaseolus vulgaris HOM05D006689 ORTHO05D008349 1.9e-85 320.1 194 80.4
Hma1.2p1_0064F.1_g034840 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 3.3e-85 319.3 241 60.6
BcaC05g29349 Brassica carinata HOM05D006689 ORTHO05D008349 1.1e-83 314.3 231 63.6
Cc06_g06350 Coffea canephora HOM05D006689 ORTHO05D008349 1.1e-83 314.3 236 59.7
Nitab4.5_0000665g0040 Nicotiana tabacum HOM05D006689 ORTHO05D008349 3.1e-83 312.8 237 59.9
Nn6g34760 Nelumbo nucifera HOM05D006689 ORTHO05D008349 4.0e-83 312.4 242 61.2
Glyma.03G200300 Glycine max HOM05D006689 ORTHO05D008349 1.2e-82 310.8 298 58.1
PSO384G4437 Papaver somniferum HOM05D006689 ORTHO05D008349 1.2e-82 310.8 236 57.6
BcaB06g25602 Brassica carinata HOM05D006689 ORTHO05D008349 1.5e-82 310.5 226 64.2
Sopen01g003330 Solanum pennellii HOM05D006689 ORTHO05D008349 1.5e-82 310.5 234 61.1
Gorai.009G398000 Gossypium raimondii HOM05D006689 ORTHO05D008349 2.6e-82 309.7 237 59.9
CiPaw.09G018700 Carya illinoinensis HOM05D006689 ORTHO05D008349 3.4e-82 309.3 242 60.3
Solyc01g007790.4 Solanum lycopersicum HOM05D006689 ORTHO05D008349 3.4e-82 309.3 234 60.7
PSO339G4581 Papaver somniferum HOM05D006689 ORTHO05D008349 7.6e-82 308.1 236 57.2
Zm00001eb362600 Zea mays HOM05D006689 ORTHO05D008349 6.4e-81 305.1 258 57.8
Sc07g0005680 Simmondsia chinensis HOM05D006689 ORTHO05D008349 1.4e-80 303.9 237 57.4
Sed0011891 Sechium edule HOM05D006689 ORTHO05D008349 5.4e-80 302.0 293 49.5
Migut.L01819 Erythranthe guttata HOM05D006689 ORTHO05D008349 1.2e-79 300.8 241 56.8
Nitab4.5_0000020g0370 Nicotiana tabacum HOM05D006689 ORTHO05D008349 1.2e-79 300.8 235 58.7
Oeu017715.1 Olea europaea HOM05D006689 ORTHO05D008349 1.3e-78 297.4 240 57.9
DCAR_013430 Daucus carota HOM05D006689 ORTHO05D008349 2.5e-77 293.1 237 56.5
ClCG04G010350 Citrullus lanatus HOM05D006689 ORTHO05D008349 7.3e-77 291.6 237 54.4
Ciclev10011965m.g Citrus clementina HOM05D006689 ORTHO05D008349 7.3e-77 291.6 251 56.2
CsaV3_6G040970 Cucumis sativus L. HOM05D006689 ORTHO05D008349 1.8e-75 287.0 237 52.7
FAN09G0196 Fragaria x ananassa HOM05D006689 ORTHO05D008349 4.0e-75 285.8 319 47.3
Cpa.g.sc104.62 Carica papaya HOM05D006689 ORTHO05D008349 6.9e-75 285.0 237 56.1
HanXRQChr13g0398201 Helianthus annuus HOM05D006689 ORTHO05D008349 9.0e-75 284.6 232 54.7
Sabra16G0075500 Salix brachista HOM05D006689 ORTHO05D008349 1.2e-74 284.3 294 51.4
HPP92_023075 Vanilla planifolia HOM05D006689 ORTHO05D008349 1.2e-74 284.3 236 57.2
Haze_19679 Corylus avellana HOM05D006689 ORTHO05D008349 4.5e-74 282.3 255 56.5
SEGI_26711 Sequoiadendron giganteum HOM05D006689 ORTHO05D008349 9.9e-74 281.2 240 52.9
ECA233G1524 Erigeron canadensis HOM05D006689 ORTHO05D008349 1.7e-73 280.4 235 54.0
MBI17_g00993_MAGBIO Magnolia biondii HOM05D006689 ORTHO05D008349 3.5e-71 272.7 215 59.5
Rhsim03G0067100 Rhododendron simsii HOM05D006689 ORTHO05D008349 2.5e-69 266.5 374 39.0
CAN.G574.36 Capsicum annuum HOM05D006689 ORTHO05D008349 7.4e-69 265.0 207 58.9
Peaxi162Scf00419g00069 Petunia axillaris HOM05D006689 ORTHO05D008349 6.2e-68 261.9 228 55.3
FAN05G0890 Fragaria x ananassa HOM05D006689 ORTHO05D008349 8.4e-65 251.5 186 64.0
Lsat_1_v5_gn_6_35180 Lactuca sativa HOM05D006689 ORTHO05D008349 9.3e-64 248.1 235 49.4
ATR0772G132 Amborella trichopoda HOM05D006689 ORTHO05D008349 8.2e-60 235.0 257 45.5
Pp3c13_7330 Physcomitrium patens HOM05D006689 ORTHO05D008349 1.5e-58 230.7 243 46.1
SalBow5G2063 Salvia bowleyana HOM05D006689 ORTHO05D008349 2.0e-58 230.3 238 48.7
CDE02G4301 Ceratophyllum demersum HOM05D006689 ORTHO05D008349 3.9e-54 216.1 174 56.9
SMO272G0021 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 4.3e-53 212.6 234 44.0
Manes.09G048600 Manihot esculenta HOM05D006689 ORTHO05D008349 9.7e-53 211.5 164 61.6
AUR62037035 Chenopodium quinoa HOM05D006689 ORTHO05D008349 2.9e-49 199.9 195 51.8
AUR62006266 Chenopodium quinoa HOM05D006689 ORTHO05D008349 3.8e-49 199.5 195 51.8
PGSC0003DMG400016416 Solanum tuberosum HOM05D006689 ORTHO05D008349 1.2e-47 194.5 139 63.3
EL10Ac7g16816 Beta vulgaris HOM05D006689 ORTHO05D008349 2.7e-47 193.4 137 64.2
SMO165G0131 Selaginella moellendorffii HOM05D006689 ORTHO05D008349 7.9e-47 191.8 248 39.1
Thecc.05G100700 Theobroma cacao HOM05D006689 ORTHO05D008349 1.1e-45 188.0 158 58.2
BolC3t16769H Brassica oleracea HOM05D006689 ORTHO05D008349 6.9e-43 178.7 127 63.8
Hma1.2p1_0064F.1_g034850 Hydrangea macrophylla HOM05D006689 ORTHO05D008349 4.5e-42 176.0 139 59.7
Gohir.A04G061300 Gossypium hirsutum HOM05D006689 ORTHO05D008349 1.7e-41 174.1 104 70.2
unitig_22.g6018 Utricularia gibba HOM05D006689 ORTHO05D008349 5.0e-41 172.6 179 43.0
Hund19873 Selenicereus undatus HOM05D006689 ORTHO05D008349 6.5e-41 172.2 220 43.2
MELO3C024575.2 Cucumis melo HOM05D006689 ORTHO05D008349 3.0e-38 163.3 233 38.6
Glyma.19G197900 Glycine max HOM05D006689 ORTHO05D008349 2.0e-37 160.6 113 67.3
vmacro07460 Vaccinium macrocarpon HOM05D006689 ORTHO05D008349 5.7e-37 159.1 182 48.9
SGA_v2.0_scaffold184G40008 Striga asiatica HOM05D006689 ORTHO05D008349 3.2e-32 143.3 97 63.9
COL.COLO4_29616 Corchorus olitorius HOM05D006689 ORTHO05D008349 3.0e-30 136.7 84 65.5
Aa31LG3G5020 Aethionema arabicum HOM05D006689 ORTHO05D008349 4.8e-28 129.4 77 71.4
Ah.08g210180 Amaranthus hybridus HOM05D006689 ORTHO05D008349 7.0e-27 125.6 76 69.7
Gohir.A04G061585 Gossypium hirsutum HOM05D006689 ORTHO05D008349 3.2e-16 90.1 65 61.5
Actinidia03903 Actinidia chinensis HOM05D006689 ORTHO05D008349 1.0e-14 85.1 90 50.0
MCO04G525 Micromonas commoda HOM05D006689 ORTHO05D008349 1.5e-13 81.3 180 28.9
Ca_12392_v3 Cicer arietinum L. HOM05D000112 ORTHO05D023238 1.3e-12 78.2 48 83.3
Cre09.g388319 Chlamydomonas reinhardtii HOM05D006689 ORTHO05D008349 3.1e-11 73.6 262 24.8
Hma1.2p1_1624F.1_g294270 Hydrangea macrophylla HOM05D000554 ORTHO05D000860 2.3e-09 67.4 44 65.9
Sabra16G0075600 Salix brachista HOM05D006689 ORTHO05D008349 2.5e-08 63.9 43 62.8
Hund19874 Selenicereus undatus HOM05D006689 ORTHO05D008349 6.8e-06 55.8 43 53.5


User provided reference genes

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