Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g103600 Medicago truncatula HOM05D007410 ORTHO05D009500 5.0e-159 565.8 777 100.0
Psat2g007640 Pisum sativum HOM05D007410 ORTHO05D009500 8.3e-106 389.0 777 87.5
TPR.G28359 Trifolium pratense HOM05D007410 ORTHO05D009500 2.9e-74 284.3 799 75.5
Glyma.03G190300 Glycine max HOM05D007410 ORTHO05D009500 1.3e-58 232.3 766 79.6
VMungo1383G0444 Vigna mungo HOM05D007410 ORTHO05D009500 8.2e-53 213.0 772 75.1
Phvul.001G185900 Phaseolus vulgaris HOM05D007410 ORTHO05D009500 3.6e-48 197.6 775 75.1
Ca_08961_v3 Cicer arietinum L. HOM05D007410 ORTHO05D009500 2.3e-47 194.9 674 85.6
Lj1g0017625 Lotus japonicus HOM05D007410 ORTHO05D009500 1.9e-46 191.8 773 77.7
Glyma.19G190667 Glycine max HOM05D007410 ORTHO05D009500 1.5e-38 165.6 356 62.4
Lalb_Chr01g0018371 Lupinus albus HOM05D007410 ORTHO05D009500 3.4e-35 154.5 365 45.2
Glyma.19G190733 Glycine max HOM05D007410 ORTHO05D009500 4.2e-33 147.5 159 84.3
Hma1.2p1_0084F.1_g043130 Hydrangea macrophylla HOM05D007410 ORTHO05D009500 4.8e-21 107.5 157 70.1
CSS0026121 Camellia sinensis var. sinensis HOM05D007410 ORTHO05D009500 1.8e-20 105.5 157 68.8
Dinv39608 Davidia involucrata HOM05D007410 ORTHO05D009500 3.1e-20 104.8 157 65.6
TWI60G0552 Tripterygium wilfordii HOM05D007410 ORTHO05D009500 3.1e-20 104.8 159 67.9
MD14G1014400 Malus domestica HOM05D007410 ORTHO05D009500 7.0e-20 103.6 159 69.2
Prupe.7G119000 Prunus persica HOM05D007410 ORTHO05D009500 3.5e-19 101.3 157 69.4
FAN05G1927 Fragaria x ananassa HOM05D007410 ORTHO05D009500 1.3e-18 99.4 159 66.0
MD12G1016300 Malus domestica HOM05D007410 ORTHO05D009500 1.7e-18 99.0 157 68.8
CANSAT80G0494 Cannabis sativa HOM05D007410 ORTHO05D009500 2.2e-18 98.6 157 68.8
Nitab4.5_0005621g0120 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.2e-18 98.6 166 66.9
FAN02G1401 Fragaria x ananassa HOM05D007410 ORTHO05D009500 3.8e-18 97.8 159 65.4
RcHm_v2.0_Chr3g0471971 Rosa chinensis HOM05D007410 ORTHO05D009500 6.5e-18 97.1 159 64.8
Potri.010G249800 Populus trichocarpa HOM05D007410 ORTHO05D009500 2.5e-17 95.1 153 69.9
FAN09G0790 Fragaria x ananassa HOM05D007410 ORTHO05D009500 7.2e-17 93.6 159 64.8
FvH4_6g17750 Fragaria vesca HOM05D007410 ORTHO05D009500 9.4e-17 93.2 159 64.8
FAN14G2442 Fragaria x ananassa HOM05D007410 ORTHO05D009500 9.4e-17 93.2 159 64.8
Sabra10G0194300 Salix brachista HOM05D001909 ORTHO05D007079 1.2e-16 92.8 154 68.8
Dinv34010 Davidia involucrata HOM05D007410 ORTHO05D009500 1.6e-16 92.4 153 68.6
PGSC0003DMG400004719 Solanum tuberosum HOM05D007410 ORTHO05D009500 3.6e-16 91.3 166 62.0
CAN.G575.91 Capsicum annuum HOM05D007410 ORTHO05D009500 3.0e-15 88.2 168 62.5
Nitab4.5_0026813g0010 Nicotiana tabacum HOM05D007410 ORTHO05D009500 2.6e-14 85.1 166 62.0
AT5G12100 Arabidopsis thaliana HOM05D007410 ORTHO05D009500 1.7e-13 82.4 160 31.2
QL02p025248 Quercus lobata HOM05D007410 ORTHO05D009500 2.2e-13 82.0 136 35.3
Cfa016527 Carpinus fangiana HOM05D007410 ORTHO05D009500 3.7e-13 81.3 135 37.0
Haze_19526 Corylus avellana HOM05D007410 ORTHO05D009500 4.8e-13 80.9 135 37.0
Sed0018174 Sechium edule HOM05D007410 ORTHO05D009500 8.3e-13 80.1 158 63.3
Solyc12g099840.1 Solanum lycopersicum HOM05D007410 ORTHO05D009500 8.3e-13 80.1 148 64.9
Aa31LG3G15130 Aethionema arabicum HOM05D007410 ORTHO05D009500 1.1e-12 79.7 163 51.5
ClCG05G007520 Citrullus lanatus HOM05D007410 ORTHO05D009500 3.1e-12 78.2 128 35.9
MELO3C006839.2 Cucumis melo HOM05D007410 ORTHO05D009500 9.1e-12 76.6 167 32.9
Carub.0006s1061 Capsella rubella HOM05D007410 ORTHO05D009500 1.6e-11 75.9 161 55.9
Duzib093G0520 Durio zibethinus HOM05D007410 ORTHO05D009500 1.6e-11 75.9 159 63.5
Gohir.A01G210000 Gossypium hirsutum HOM05D007410 ORTHO05D009500 4.5e-11 74.3 157 63.1
CsaV3_3G016400 Cucumis sativus L. HOM05D007410 ORTHO05D009500 1.0e-10 73.2 134 35.8
AUR62013683 Chenopodium quinoa HOM05D007410 ORTHO05D009500 1.7e-10 72.4 155 61.9
Gohir.D01G198900 Gossypium hirsutum HOM05D007410 ORTHO05D009500 1.7e-10 72.4 157 62.4
Gorai.002G243300 Gossypium raimondii HOM05D007410 ORTHO05D009500 1.7e-10 72.4 157 62.4
Manes.09G058000 Manihot esculenta HOM05D007410 ORTHO05D009500 1.7e-10 72.4 156 62.2
Eucgr.A01557 Eucalyptus grandis HOM05D007410 ORTHO05D009500 2.2e-10 72.0 158 58.2
Sopen12g034470 Solanum pennellii HOM05D007410 ORTHO05D009500 2.9e-10 71.6 148 64.9
Sp6g31520 Schrenkiella parvula HOM05D007410 ORTHO05D009500 3.8e-10 71.2 157 55.4
FAN09G1720 Fragaria x ananassa HOM05D007410 ORTHO05D009500 8.5e-10 70.1 133 32.3
EL10Ac1g00861 Beta vulgaris HOM05D007410 ORTHO05D009500 1.1e-09 69.7 163 33.1
DCAR_013956 Daucus carota HOM05D007410 ORTHO05D009500 1.5e-09 69.3 131 29.8
PGR004G1775 Punica granatum HOM05D007410 ORTHO05D009500 1.9e-09 68.9 159 55.3
Sc18g0006010 Simmondsia chinensis HOM05D007410 ORTHO05D009500 1.9e-09 68.9 148 64.9
Aqoxy1G00955 Aquilegia oxysepala HOM05D007410 ORTHO05D009500 2.5e-09 68.6 136 31.6
Migut.J00989 Erythranthe guttata HOM05D007410 ORTHO05D009500 4.2e-09 67.8 167 32.3
Atru.BG.129.p Acer truncatum HOM05D007410 ORTHO05D009500 5.5e-09 67.4 126 35.7
SHI27720 Sapria himalayana HOM05D007410 ORTHO05D009500 5.5e-09 67.4 55 52.7
Oeu058028.1 Olea europaea HOM05D007410 ORTHO05D009500 7.2e-09 67.0 130 32.3
SGA_v2.0_scaffold75G24801 Striga asiatica HOM05D007410 ORTHO05D009500 9.5e-09 66.6 145 30.3
COL.COLO4_29826 Corchorus olitorius HOM05D007410 ORTHO05D009500 2.1e-08 65.5 55 49.1
TAR365G0607 Trochodendron aralioides HOM05D007410 ORTHO05D009500 4.7e-08 64.3 119 31.9
Nn8g39918 Nelumbo nucifera HOM05D007410 ORTHO05D009500 6.1e-08 63.9 121 31.4
HanXRQChr17g0534281 Helianthus annuus HOM05D007410 ORTHO05D009500 1.0e-07 63.2 164 31.1
SGA_v2.0_scaffold40G15416 Striga asiatica HOM05D007410 ORTHO05D009500 1.0e-07 63.2 146 28.1
Peaxi162Scf00802g00013 Petunia axillaris HOM05D007410 ORTHO05D009500 1.4e-07 62.8 155 31.0
Nitab4.5_0001290g0100 Nicotiana tabacum HOM05D007410 ORTHO05D009500 1.8e-07 62.4 155 31.6
Oeu023854.1 Olea europaea HOM05D007410 ORTHO05D009500 4.0e-07 61.2 166 28.9
Ah.05g174660 Amaranthus hybridus HOM05D007410 ORTHO05D009500 1.2e-06 59.7 50 46.0
Ciclev10033972m.g Citrus clementina HOM05D007410 ORTHO05D009500 3.4e-06 58.2 48 52.1
Rhsim03G0082200 Rhododendron simsii HOM05D007410 ORTHO05D009500 3.4e-06 58.2 122 31.1
A10p25700 Brassica napus HOM05D007410 ORTHO05D009500 7.5e-06 57.0 140 27.1
C09p64770 Brassica napus HOM05D007410 ORTHO05D009500 7.5e-06 57.0 131 28.2
BraA10t44635Z Brassica rapa HOM05D007410 ORTHO05D009500 9.8e-06 56.6 140 27.9
Cpa.g.sc117.70 Carica papaya HOM05D007410 ORTHO05D009500 9.8e-06 56.6 159 61.6


User provided reference genes

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