Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g099260 Medicago truncatula HOM05D007706 ORTHO05D009593 8.0e-144 514.2 364 100.0
TPR.G30860 Trifolium pratense HOM05D003225 ORTHO05D003818 9.3e-100 367.9 370 78.4
Psat3g051920 Pisum sativum HOM05D007706 ORTHO05D009593 2.3e-98 363.2 367 79.6
Psat3g053960 Pisum sativum HOM05D007706 ORTHO05D009593 4.1e-79 299.3 368 71.5
Ca_08742_v3 Cicer arietinum L. HOM05D007706 ORTHO05D009593 3.4e-78 296.2 369 73.2
TPR.G20053 Trifolium pratense HOM05D007706 ORTHO05D009593 8.5e-77 291.6 374 71.4
Medtr7g098450 Medicago truncatula HOM05D007706 ORTHO05D009593 4.2e-76 289.3 379 70.7
Ca_08762_v3 Cicer arietinum L. HOM05D003225 ORTHO05D009593 8.2e-72 275.0 373 68.4
Ca_30216_v3 Cicer arietinum L. HOM05D003225 ORTHO05D003818 5.0e-69 265.8 314 75.5
VMungo1383G0992 Vigna mungo HOM05D007706 ORTHO05D009593 5.9e-62 242.3 383 61.6
Glyma.19G168300 Glycine max HOM05D007706 ORTHO05D009593 1.4e-58 231.1 276 54.7
Lj1g0013336 Lotus japonicus HOM05D007706 ORTHO05D009593 1.8e-58 230.7 382 62.8
Glyma.03G167200 Glycine max HOM05D007706 ORTHO05D009593 1.3e-56 224.6 275 56.4
arahy.Tifrunner.gnm1.ann1.NJ5037 Arachis hypogaea HOM05D007706 ORTHO05D009593 6.3e-56 222.2 380 62.6
arahy.Tifrunner.gnm1.ann1.S77KHM Arachis hypogaea HOM05D007706 ORTHO05D009593 1.2e-54 218.0 380 63.4
Phvul.001G164700 Phaseolus vulgaris HOM05D007706 ORTHO05D009593 1.7e-53 214.2 379 51.2
Lalb_Chr20g0113631 Lupinus albus HOM05D007706 ORTHO05D009593 4.2e-44 183.0 391 59.8
Potri.002G256900 Populus trichocarpa HOM05D007706 ORTHO05D009593 3.3e-36 156.8 311 40.2
Sabra02G0195300 Salix brachista HOM05D007706 ORTHO05D009593 4.0e-34 149.8 292 42.1
Thecc.01G250700 Theobroma cacao HOM05D007706 ORTHO05D009593 5.7e-33 146.0 308 42.2
ECA236G0985 Erigeron canadensis HOM05D007706 ORTHO05D009593 2.2e-32 144.1 295 39.0
PGR031G0475 Punica granatum HOM05D007706 ORTHO05D009593 1.1e-31 141.7 279 42.3
QL09p041349 Quercus lobata HOM05D007706 ORTHO05D009593 1.1e-31 141.7 293 41.6
FAN27G2030 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.8e-31 141.0 295 40.0
Haze_24704 Corylus avellana HOM05D007706 ORTHO05D009593 1.2e-30 138.3 297 43.1
MD05G1189100 Malus domestica HOM05D007706 ORTHO05D009593 1.2e-30 138.3 296 37.2
Cfa002482 Carpinus fangiana HOM05D007706 ORTHO05D009593 5.9e-30 136.0 295 42.0
Rhsim13G0040100 Rhododendron simsii HOM05D007706 ORTHO05D009593 6.6e-29 132.5 294 42.2
Duzib138G1124 Durio zibethinus HOM05D007706 ORTHO05D009593 8.6e-29 132.1 305 38.7
Manes.12G037850 Manihot esculenta HOM05D007706 ORTHO05D009593 4.3e-28 129.8 291 42.3
Duzib133G1528 Durio zibethinus HOM05D007706 ORTHO05D009593 5.6e-28 129.4 297 40.7
Lsat_1_v5_gn_8_92000 Lactuca sativa HOM05D007706 ORTHO05D009593 7.3e-28 129.0 273 39.2
RcHm_v2.0_Chr6g0286691 Rosa chinensis HOM05D007706 ORTHO05D009593 3.6e-27 126.7 294 37.8
Gohir.D07G210400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 8.0e-27 125.6 309 39.5
TWI12G0795 Tripterygium wilfordii HOM05D007706 ORTHO05D009593 8.0e-27 125.6 278 38.8
FvH4_2g20530 Fragaria vesca HOM05D007706 ORTHO05D009593 2.3e-26 124.0 296 38.2
FAN24G1454 Fragaria x ananassa HOM05D007706 ORTHO05D009593 2.3e-26 124.0 296 38.2
Nitab4.5_0007992g0040 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.2e-25 121.7 283 39.2
CiPaw.04G190500 Carya illinoinensis HOM05D007706 ORTHO05D009593 2.0e-25 120.9 302 37.4
Gohir.A07G204400 Gossypium hirsutum HOM05D007706 ORTHO05D009593 2.0e-25 120.9 302 37.4
Dinv16399 Davidia involucrata HOM05D007706 ORTHO05D009593 2.6e-25 120.6 299 40.8
Eucgr.A01320 Eucalyptus grandis HOM05D007706 ORTHO05D009593 3.4e-25 120.2 306 36.6
Sopen09g025790 Solanum pennellii HOM05D007706 ORTHO05D009593 3.4e-25 120.2 292 37.7
PGSC0003DMG400008584 Solanum tuberosum HOM05D007706 ORTHO05D009593 5.8e-25 119.4 289 37.7
FAN15G0362 Fragaria x ananassa HOM05D007706 ORTHO05D009593 1.3e-24 118.2 291 38.1
Solyc09g064630.3 Solanum lycopersicum HOM05D007706 ORTHO05D009593 1.3e-24 118.2 289 36.0
Gorai.001G237800 Gossypium raimondii HOM05D007706 ORTHO05D009593 2.2e-24 117.5 307 38.4
Migut.D00475 Erythranthe guttata HOM05D007706 ORTHO05D009593 2.9e-24 117.1 286 37.8
Aqoxy5G00146 Aquilegia oxysepala HOM05D007706 ORTHO05D009593 6.4e-24 115.9 296 35.1
CSS0048547 Camellia sinensis var. sinensis HOM05D007706 ORTHO05D009593 1.4e-23 114.8 303 38.0
Prupe.8G215700 Prunus persica HOM05D007706 ORTHO05D009593 1.9e-23 114.4 292 34.9
SalBow4G1824 Salvia bowleyana HOM05D007706 ORTHO05D009593 9.2e-23 112.1 280 33.9
Cc01_g17810 Coffea canephora HOM05D007706 ORTHO05D009593 2.0e-22 110.9 275 36.4
Peaxi162Scf00043g02924 Petunia axillaris HOM05D007706 ORTHO05D009593 2.0e-22 110.9 225 37.8
Ciclev10020687m.g Citrus clementina HOM05D007706 ORTHO05D009593 4.6e-22 109.8 284 38.7
Lj2C1142T11 Lonicera japonica HOM05D007706 ORTHO05D009593 6.0e-22 109.4 297 37.7
Migut.N02230 Erythranthe guttata HOM05D007706 ORTHO05D009593 1.7e-21 107.8 279 36.9
vmacro02710 Vaccinium macrocarpon HOM05D007706 ORTHO05D009593 5.0e-21 106.3 290 38.6
CiPaw.03G270700 Carya illinoinensis HOM05D007706 ORTHO05D009593 1.5e-20 104.8 294 37.8
HanXRQChr04g0108691 Helianthus annuus HOM05D007706 ORTHO05D009593 1.5e-20 104.8 275 34.5
Nn3g19784 Nelumbo nucifera HOM05D007706 ORTHO05D009593 4.3e-20 103.2 289 33.2
Ah.15g092610 Amaranthus hybridus HOM05D007706 ORTHO05D009593 9.5e-20 102.1 280 37.1
Dinv34676 Davidia involucrata HOM05D007706 ORTHO05D009593 9.5e-20 102.1 299 35.5
TAR362G1069 Trochodendron aralioides HOM05D007706 ORTHO05D009593 1.2e-19 101.7 301 37.5
Cpa.g.sc87.26 Carica papaya HOM05D007706 ORTHO05D009593 2.1e-19 100.9 302 34.8
Nn1g02965 Nelumbo nucifera HOM05D007706 ORTHO05D009593 2.8e-19 100.5 310 35.8
SGA_v2.0_scaffold1G00652 Striga asiatica HOM05D007706 ORTHO05D009593 1.1e-18 98.6 277 35.7
Hma1.2p1_1930F.1_g307940 Hydrangea macrophylla HOM05D007706 ORTHO05D009593 8.9e-18 95.5 302 40.1
Lalb_Chr01g0019491 Lupinus albus HOM05D007706 ORTHO05D009593 9.8e-17 92.0 110 60.9
GSVIVG01027919001 Vitis vinifera HOM05D006910 ORTHO05D008937 6.4e-16 89.4 297 33.7
PSO675G7213 Papaver somniferum HOM05D007706 ORTHO05D009593 2.4e-15 87.4 285 30.5
AUR62008796 Chenopodium quinoa HOM05D007706 ORTHO05D009593 3.2e-15 87.0 275 32.4
MBI07_g23229_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 3.2e-15 87.0 289 32.5
PSO541G4538 Papaver somniferum HOM05D007706 ORTHO05D009593 4.1e-15 86.7 291 33.7
MSTRG.18353 Avicennia marina HOM05D007706 ORTHO05D009593 5.4e-15 86.3 311 31.8
CsaV3_6G007370 Cucumis sativus L. HOM05D007706 ORTHO05D009593 7.1e-15 85.9 287 31.7
PSO782G3886 Papaver somniferum HOM05D006910 ORTHO05D009593 7.1e-15 85.9 289 29.8
CANSAT01G1705 Cannabis sativa HOM05D007706 ORTHO05D009593 3.5e-14 83.6 289 32.9
Sopen12g010960 Solanum pennellii HOM05D000004 ORTHO05D009593 1.7e-13 81.3 169 37.3
Duzib151G0386 Durio zibethinus HOM05D006910 ORTHO05D008937 2.3e-13 80.9 295 31.5
Gohir.A10G107300 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.5e-12 78.2 297 31.0
EL10Ac7g17683 Beta vulgaris HOM05D007706 ORTHO05D009593 2.5e-12 77.4 285 31.2
MELO3C022390.2 Cucumis melo HOM05D007706 ORTHO05D009593 2.5e-12 77.4 290 33.1
Gorai.011G179800 Gossypium raimondii HOM05D006910 ORTHO05D008937 7.3e-12 75.9 297 31.0
MBI10_g26041_MAGBIO Magnolia biondii HOM05D007706 ORTHO05D009593 7.3e-12 75.9 282 31.9
Gohir.D10G160000 Gossypium hirsutum HOM05D006910 ORTHO05D008937 1.6e-11 74.7 290 29.7
CSS0027831 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 2.8e-11 73.9 289 33.9
Dinv29800 Davidia involucrata HOM05D006910 ORTHO05D008937 6.2e-11 72.8 331 29.6
Prupe.1G049000 Prunus persica HOM05D006910 ORTHO05D008937 1.8e-10 71.2 295 31.5
HPP92_022478 Vanilla planifolia HOM05D007706 ORTHO05D009593 2.3e-10 70.9 282 28.0
Atru.chr4.1910 Acer truncatum HOM05D006910 ORTHO05D008937 3.1e-10 70.5 300 27.7
PSO478G1200 Papaver somniferum HOM05D006910 ORTHO05D009593 4.0e-10 70.1 215 34.4
Oeu026810.1 Olea europaea HOM05D007706 ORTHO05D009593 5.2e-10 69.7 86 55.8
CDE05G1228 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 6.8e-10 69.3 220 33.2
SalBow7G0697 Salvia bowleyana HOM05D007706 ORTHO05D009593 2.0e-09 67.8 196 36.2
CSS0021483 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 4.4e-09 66.6 303 32.7
COL.COLO4_10568 Corchorus olitorius HOM05D007706 ORTHO05D009593 4.4e-09 66.6 49 65.3
CSS0004989 Camellia sinensis var. sinensis HOM05D006910 ORTHO05D008937 7.6e-09 65.9 291 32.0
SEGI_40436 Sequoiadendron giganteum HOM05D052464 ORTHO05D009593 1.3e-08 65.1 292 27.7
Dinv27116 Davidia involucrata HOM05D006910 ORTHO05D008937 3.7e-08 63.5 122 37.7
Actinidia37550 Actinidia chinensis HOM05D006910 ORTHO05D008937 1.1e-07 62.0 119 36.1
CDE11G0528 Ceratophyllum demersum HOM05D007706 ORTHO05D009593 1.4e-07 61.6 278 27.0
Nitab4.5_0000845g0230 Nicotiana tabacum HOM05D007706 ORTHO05D009593 1.4e-07 61.6 91 41.8
MSTRG.21461 Avicennia marina HOM05D007706 ORTHO05D009593 3.2e-07 60.5 77 45.5
Haze_11463 Corylus avellana HOM05D006910 ORTHO05D008937 4.1e-07 60.1 89 41.6
vmacro15481 Vaccinium macrocarpon HOM05D006910 ORTHO05D008937 4.1e-07 60.1 39 66.7
ClCG06G001430 Citrullus lanatus HOM05D007706 ORTHO05D009593 5.4e-07 59.7 289 30.1
PSO675G2181 Papaver somniferum HOM05D007706 ORTHO05D009593 3.5e-06 57.0 236 28.8
QL06p021124 Quercus lobata HOM05D006910 ORTHO05D008937 3.5e-06 57.0 33 72.7
Os03g0140700 Oryza sativa ssp. japonica HOM05D007706 ORTHO05D009593 4.6e-06 56.6 271 30.6
Potri.008G172200 Populus trichocarpa HOM05D006910 ORTHO05D008937 6.0e-06 56.2 289 25.6
Sopen03g001720 Solanum pennellii HOM05D006910 ORTHO05D008937 6.0e-06 56.2 114 33.3
DCAR_027350 Daucus carota HOM05D006910 ORTHO05D008937 7.8e-06 55.8 34 70.6
Hma1.2p1_0112F.1_g054780 Hydrangea macrophylla HOM05D006910 ORTHO05D008937 7.8e-06 55.8 32 75.0
Peaxi162Scf00319g00521 Petunia axillaris HOM05D006910 ORTHO05D008937 7.8e-06 55.8 122 32.0


User provided reference genes

Program Settings