Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.7e-159 566.2 339 100.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.0e-130 467.6 345 87.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 7.3e-99 364.8 351 63.0
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 8.7e-92 341.3 270 70.7
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.2e-88 330.9 258 70.9
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.9e-70 270.4 377 48.5
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 6.3e-66 255.4 370 56.2
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 2.9e-63 246.5 384 46.6
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 2.1e-61 240.4 371 46.6
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.3e-58 231.1 388 47.9
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 3.4e-56 223.0 373 44.8
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.6e-53 214.2 358 45.8
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 2.2e-50 203.8 341 52.2
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 1.4e-49 201.1 331 45.9
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.0e-47 194.9 347 51.9
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.3e-47 194.5 349 44.4
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.2e-46 189.9 386 41.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 5.5e-46 189.1 370 40.8
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 6.7e-44 182.2 384 39.3
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 6.7e-44 182.2 358 43.3
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.8e-44 181.8 370 41.9
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 1.3e-42 177.9 363 39.9
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.0e-40 170.6 385 39.0
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 2.6e-40 170.2 369 39.0
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 2.6e-40 170.2 350 49.4
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.7e-39 167.5 387 38.8
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.9e-39 166.8 387 39.0
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 3.8e-39 166.4 373 44.0
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 8.5e-39 165.2 363 39.9
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.2e-38 163.3 387 38.8
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 3.2e-38 163.3 405 36.8
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 3.2e-38 163.3 411 36.7
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 4.2e-38 162.9 383 47.0
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.2e-38 162.9 356 40.7
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.2e-37 161.4 359 39.3
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 2.7e-37 160.2 410 46.3
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.6e-37 159.8 384 38.8
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 4.7e-37 159.5 385 38.7
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 4.7e-37 159.5 358 38.3
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 8.0e-37 158.7 348 39.7
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.8e-36 157.5 366 41.0
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.3e-36 157.1 400 37.2
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.0e-36 156.8 370 37.0
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 5.2e-36 156.0 355 37.5
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 8.8e-36 155.2 243 45.3
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 2.6e-35 153.7 409 45.7
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 2.6e-35 153.7 363 41.6
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 3.3e-35 153.3 341 45.7
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 4.4e-35 152.9 317 41.3
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 4.4e-35 152.9 397 36.5
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 5.7e-35 152.5 276 44.9
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 1.3e-34 151.4 386 40.9
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.7e-34 151.0 367 48.0
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.7e-34 151.0 337 44.5
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.8e-34 150.2 269 41.3
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 4.8e-34 149.4 337 44.2
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 6.3e-34 149.1 358 37.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.8e-33 147.5 360 36.9
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 2.4e-33 147.1 395 41.0
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.4e-33 147.1 222 50.9
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 4.1e-33 146.4 354 37.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.7e-32 143.7 199 46.2
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 2.7e-32 143.7 338 36.7
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 6.5e-31 139.0 206 44.7
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 8.5e-31 138.7 275 40.7
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 1.1e-30 138.3 345 41.4
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.1e-30 138.3 364 38.7
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 2.5e-30 137.1 331 37.2
Ca_08528_v3 Cicer arietinum L. HOM05D003648 ORTHO05D004267 4.2e-30 136.3 105 70.5
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 4.2e-30 136.3 166 50.0
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 7.2e-30 135.6 358 36.3
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.1e-29 134.0 198 46.0
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 2.7e-29 133.7 330 41.2
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.7e-29 133.7 309 41.1
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.1e-29 132.5 373 32.7
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.4e-28 131.3 255 40.0
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.8e-28 131.0 311 50.8
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-28 131.0 335 45.4
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.0e-28 130.2 238 42.0
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 3.0e-28 130.2 346 34.1
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 4.0e-28 129.8 380 31.8
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 4.0e-28 129.8 346 41.3
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 4.0e-28 129.8 349 35.0
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 5.2e-28 129.4 280 38.2
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 6.8e-28 129.0 383 32.9
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 8.8e-28 128.6 308 48.7
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 4.4e-27 126.3 173 44.5
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.7e-27 125.9 341 45.7
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.2e-26 124.0 403 33.5
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 4.8e-26 122.9 296 50.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.8e-26 122.9 366 44.3
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.8e-25 120.9 140 50.7
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.8e-25 120.9 138 50.7
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 2.4e-25 120.6 275 43.6
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 3.1e-25 120.2 227 39.2
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 4.1e-25 119.8 369 43.9
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 4.1e-25 119.8 365 32.9
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 9.1e-25 118.6 358 34.9
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 1.2e-24 118.2 140 69.3
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.6e-24 117.9 361 31.9
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.6e-24 117.9 234 37.6
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.5e-24 116.7 207 41.5
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 5.9e-24 115.9 128 57.8
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.7e-23 114.4 338 34.6
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.9e-23 113.6 349 35.0
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 6.6e-23 112.5 262 38.2
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.1e-22 111.7 341 40.2
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.1e-22 111.7 326 33.1
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 5.5e-22 109.4 154 43.5
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 6.1e-21 105.9 125 50.4
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.8e-20 104.4 127 49.6
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.8e-20 104.4 51 90.2
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 3.0e-20 103.6 129 48.8
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.2e-20 102.8 372 39.0
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 5.2e-20 102.8 128 50.0
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 6.8e-20 102.4 347 30.8
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 8.9e-20 102.1 124 49.2
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 8.9e-20 102.1 49 91.8
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.2e-19 101.7 131 45.8
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.6e-19 100.5 232 34.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.6e-19 100.5 133 45.1
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 3.4e-19 100.1 332 34.0
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 9.8e-19 98.6 126 54.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 1.7e-18 97.8 123 48.0
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 3.7e-18 96.7 137 40.9
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.9e-18 96.3 119 45.4
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 1.1e-17 95.1 125 47.2
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.4e-17 94.7 169 40.2
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.4e-17 94.7 169 40.2
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.4e-17 94.7 169 40.2
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.4e-17 94.7 176 43.8
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 1.8e-17 94.4 115 49.6
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.8e-17 94.4 159 43.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 2.4e-17 94.0 92 57.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 3.2e-17 93.6 169 39.1
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 4.1e-17 93.2 169 39.6
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 1.2e-16 91.7 123 54.5
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.2e-16 91.7 95 52.6
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.2e-16 91.7 162 41.4
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 1.6e-16 91.3 122 46.7
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.6e-16 91.3 130 44.6
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.6e-16 91.3 130 44.6
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 1.6e-16 91.3 122 46.7
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 4.5e-16 89.7 122 45.9
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 4.5e-16 89.7 122 45.9
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 4.5e-16 89.7 122 45.9
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.9e-16 89.4 149 38.9
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.0e-15 88.6 130 56.2
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.0e-15 88.6 168 37.5
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 3.9e-15 86.7 49 83.7
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 8.6e-15 85.5 120 56.7
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 1.1e-14 85.1 119 53.8
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 4.3e-14 83.2 43 81.4
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.1e-12 77.0 106 43.4
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.1e-12 77.0 106 43.4
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 5.2e-12 76.3 40 80.0
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 8.9e-12 75.5 239 30.1
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 8.9e-12 75.5 267 37.5
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.0e-11 74.3 270 29.3
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 1.3e-10 71.6 79 50.6
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.7e-10 71.2 52 59.6
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.4e-09 68.2 183 32.2
TPR.G16984 Trifolium pratense HOM05D003648 ORTHO05D004267 3.2e-09 67.0 101 48.5
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 5.4e-09 66.2 133 38.3
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 6.0e-08 62.8 118 38.1
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 6.0e-08 62.8 138 31.2
QL07p024385 Quercus lobata HOM05D046221 ORTHO05D014310 1.0e-07 62.0 119 32.8
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.3e-07 61.6 154 31.2
Potri.016G059400 Populus trichocarpa HOM05D014635 ORTHO05D014310 8.6e-07 58.9 128 32.8
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.9e-06 57.8 78 38.5
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 3.3e-06 57.0 108 36.1


User provided reference genes

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