Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g093040 Medicago truncatula HOM05D003703 ORTHO05D004278 2.3e-102 375.6 191 100.0
Psat3g069120 Pisum sativum HOM05D003703 ORTHO05D004278 8.1e-71 270.8 204 76.0
TPR.G18214 Trifolium pratense HOM05D003703 ORTHO05D004278 3.8e-68 261.9 199 74.4
Lj1g0027593 Lotus japonicus HOM05D003703 ORTHO05D004278 4.6e-66 255.0 191 74.9
Ca_08513_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 4.3e-64 248.4 156 84.0
Lalb_Chr18g0047801 Lupinus albus HOM05D003703 ORTHO05D004278 1.7e-60 236.5 195 69.2
arahy.Tifrunner.gnm1.ann1.6W7ZDH Arachis hypogaea HOM05D003703 ORTHO05D004278 2.7e-58 229.2 205 62.4
Lalb_Chr15g0078951 Lupinus albus HOM05D003703 ORTHO05D004278 1.3e-55 220.3 206 63.1
VMungo1383G3663 Vigna mungo HOM05D003703 ORTHO05D004278 6.2e-55 218.0 211 62.6
Phvul.001G141500 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 1.1e-54 217.2 209 62.7
Glyma.09G112700 Glycine max HOM05D003703 ORTHO05D004278 2.2e-52 209.5 186 63.4
Glyma.19G146900 Glycine max HOM05D003703 ORTHO05D004278 1.2e-50 203.8 200 59.0
Lj5g0003065 Lotus japonicus HOM05D003703 ORTHO05D004278 1.1e-48 197.2 188 59.6
Glyma.02G178400 Glycine max HOM05D003703 ORTHO05D004278 3.3e-48 195.7 183 61.7
Glyma.03G143800 Glycine max HOM05D003703 ORTHO05D004278 3.3e-48 195.7 202 57.4
TPR.G27747 Trifolium pratense HOM05D003703 ORTHO05D004278 3.7e-47 192.2 209 55.5
Psat6g128520 Pisum sativum HOM05D003703 ORTHO05D004278 3.4e-45 185.7 188 58.0
Medtr1g053900 Medicago truncatula HOM05D003703 ORTHO05D004278 4.5e-45 185.3 205 58.5
Phvul.007G258900 Phaseolus vulgaris HOM05D003703 ORTHO05D004278 2.9e-44 182.6 196 54.6
Lalb_Chr07g0188981 Lupinus albus HOM05D003703 ORTHO05D004278 9.3e-43 177.6 219 51.1
VMungo0720G2172 Vigna mungo HOM05D003703 ORTHO05D004278 1.6e-42 176.8 199 53.3
Sabra16G0051300 Salix brachista HOM05D003703 ORTHO05D004278 3.0e-41 172.6 197 51.8
Potri.016G047800 Populus trichocarpa HOM05D003703 ORTHO05D004278 8.7e-41 171.0 197 49.7
CiPaw.09G031500 Carya illinoinensis HOM05D003703 ORTHO05D004278 1.5e-40 170.2 198 50.5
Potri.006G191100 Populus trichocarpa HOM05D003703 ORTHO05D004278 3.3e-40 169.1 197 51.8
Cpa.g.c33371 Carica papaya HOM05D003703 ORTHO05D004278 4.3e-40 168.7 211 49.3
QL07p023397 Quercus lobata HOM05D003703 ORTHO05D004278 5.7e-40 168.3 182 52.7
FAN05G5107 Fragaria x ananassa HOM05D003703 ORTHO05D004278 2.8e-39 166.0 209 48.3
Sabra06G0146400 Salix brachista HOM05D003703 ORTHO05D004278 2.8e-39 166.0 197 51.3
Duzib093G1286 Durio zibethinus HOM05D003703 ORTHO05D004278 3.7e-39 165.6 198 49.5
Manes.09G033600 Manihot esculenta HOM05D003703 ORTHO05D004278 6.3e-39 164.9 198 50.0
CSS0005195 Camellia sinensis var. sinensis HOM05D003703 ORTHO05D004278 8.2e-39 164.5 200 50.5
FAN09G0581 Fragaria x ananassa HOM05D003703 ORTHO05D004278 8.2e-39 164.5 209 47.4
FAN02G0416 Fragaria x ananassa HOM05D003703 ORTHO05D004278 1.4e-38 163.7 209 47.4
Manes.08G045500 Manihot esculenta HOM05D003703 ORTHO05D004278 1.4e-38 163.7 203 48.8
Duzib106G1084 Durio zibethinus HOM05D003703 ORTHO05D004278 1.8e-38 163.3 198 47.5
Ciclev10012846m.g Citrus clementina HOM05D003703 ORTHO05D004278 4.1e-38 162.2 198 50.0
FvH4_6g22530 Fragaria vesca HOM05D003703 ORTHO05D004278 4.1e-38 162.2 209 47.4
FAN14G3432 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.1e-38 162.2 209 47.4
FAN14G3905 Fragaria x ananassa HOM05D003703 ORTHO05D004278 4.1e-38 162.2 209 47.4
COL.COLO4_36150 Corchorus olitorius HOM05D003703 ORTHO05D004278 9.1e-38 161.0 199 46.7
Gohir.A01G192300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 2.0e-37 159.8 192 51.6
Thecc.05G169900 Theobroma cacao HOM05D003703 ORTHO05D004278 2.6e-37 159.5 199 49.2
CiPaw.10G027200 Carya illinoinensis HOM05D003703 ORTHO05D004278 4.5e-37 158.7 200 46.5
Hma1.2p1_0183F.1_g080800 Hydrangea macrophylla HOM05D003703 ORTHO05D004278 1.7e-36 156.8 199 47.7
RcHm_v2.0_Chr3g0479981 Rosa chinensis HOM05D003703 ORTHO05D004278 2.2e-36 156.4 210 48.1
Sed0017921 Sechium edule HOM05D003703 ORTHO05D004278 2.2e-36 156.4 192 48.4
Gorai.006G142100 Gossypium raimondii HOM05D003703 ORTHO05D004278 3.8e-36 155.6 200 45.5
Gohir.D09G123500 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.1e-35 154.1 200 45.0
Gohir.D01G177600 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.9e-35 153.3 192 50.0
Gorai.002G225600 Gossypium raimondii HOM05D003703 ORTHO05D004278 1.9e-35 153.3 192 50.0
Actinidia38577 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.5e-35 152.9 172 51.2
Gohir.A09G127300 Gossypium hirsutum HOM05D003703 ORTHO05D004278 7.2e-35 151.4 200 44.5
Oeu035192.1 Olea europaea HOM05D003703 ORTHO05D004278 7.2e-35 151.4 196 49.5
TWI74G0378 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 9.4e-35 151.0 194 49.0
ClCG09G019210 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.2e-34 150.6 190 49.5
MELO3C021570.2 Cucumis melo HOM05D003703 ORTHO05D004278 1.2e-34 150.6 194 48.5
Gohir.D04G098100 Gossypium hirsutum HOM05D003703 ORTHO05D004278 1.2e-34 150.6 195 47.2
Ah.13g075990 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.6e-34 150.2 226 42.9
CsaV3_5G027200 Cucumis sativus L. HOM05D003703 ORTHO05D004278 1.6e-34 150.2 193 48.7
MD14G1059200 Malus domestica HOM05D003703 ORTHO05D004278 1.6e-34 150.2 209 43.1
Cc06_g16110 Coffea canephora HOM05D003703 ORTHO05D004278 2.1e-34 149.8 205 44.4
Gorai.006G067100 Gossypium raimondii HOM05D003703 ORTHO05D004278 2.7e-34 149.4 193 47.2
Atru.chr8.1077 Acer truncatum HOM05D003703 ORTHO05D004278 6.1e-34 148.3 198 46.0
Lj2P370T14 Lonicera japonica HOM05D003703 ORTHO05D004278 1.0e-33 147.5 176 48.3
Nitab4.5_0000016g0390 Nicotiana tabacum HOM05D003703 ORTHO05D004278 1.0e-33 147.5 196 45.9
Nitab4.5_0002035g0010 Nicotiana tabacum HOM05D003703 ORTHO05D004278 2.3e-33 146.4 190 45.3
AUR62012046 Chenopodium quinoa HOM05D003703 ORTHO05D004278 5.1e-33 145.2 206 42.7
Migut.K00046 Erythranthe guttata HOM05D003703 ORTHO05D004278 5.1e-33 145.2 206 44.2
CAN.G515.11 Capsicum annuum HOM05D003703 ORTHO05D004278 2.0e-32 143.3 195 49.2
Prupe.7G075500 Prunus persica HOM05D003703 ORTHO05D004278 2.6e-32 142.9 216 44.0
HanXRQChr10g0300741 Helianthus annuus HOM05D003703 ORTHO05D004278 3.3e-32 142.5 191 45.0
DCAR_013556 Daucus carota HOM05D003703 ORTHO05D004278 4.4e-32 142.1 177 44.6
Cfa020181 Carpinus fangiana HOM05D003703 ORTHO05D004278 9.7e-32 141.0 202 44.1
Oeu007772.1 Olea europaea HOM05D003703 ORTHO05D004278 3.7e-31 139.0 189 46.0
Sp5g04770 Schrenkiella parvula HOM05D003703 ORTHO05D004278 4.8e-31 138.7 186 46.2
CANSAT64G0621 Cannabis sativa HOM05D003703 ORTHO05D004278 6.3e-31 138.3 230 41.7
ECA247G0725 Erigeron canadensis HOM05D003703 ORTHO05D004278 8.2e-31 137.9 191 46.6
Rhsim03G0008400 Rhododendron simsii HOM05D003703 ORTHO05D004278 1.1e-30 137.5 200 46.0
TWI53G0257 Tripterygium wilfordii HOM05D003703 ORTHO05D004278 1.8e-30 136.7 183 45.4
MD12G1058500 Malus domestica HOM05D003703 ORTHO05D004278 2.4e-30 136.3 191 42.4
A09p50780 Brassica napus HOM05D003703 ORTHO05D004278 4.1e-30 135.6 186 45.7
Aa31LG10G12650 Aethionema arabicum HOM05D003703 ORTHO05D004278 5.3e-30 135.2 182 47.3
BraA09t40525Z Brassica rapa HOM05D003703 ORTHO05D004278 5.3e-30 135.2 185 45.4
BolC8t50948H Brassica oleracea HOM05D003703 ORTHO05D004278 6.9e-30 134.8 183 45.4
DCAR_017017 Daucus carota HOM05D003703 ORTHO05D004278 9.1e-30 134.4 195 45.1
TAR633G0624 Trochodendron aralioides HOM05D004867 ORTHO05D005729 9.1e-30 134.4 199 41.7
Ca_25700_v3 Cicer arietinum L. HOM05D003703 ORTHO05D004278 1.2e-29 134.0 114 57.9
C08p33500 Brassica napus HOM05D003703 ORTHO05D004278 1.5e-29 133.7 183 46.4
Eucgr.K01832 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.5e-29 133.7 193 44.6
Lsat_1_v5_gn_9_26721 Lactuca sativa HOM05D003703 ORTHO05D004278 1.5e-29 133.7 180 47.2
PGSC0003DMG400009700 Solanum tuberosum HOM05D003703 ORTHO05D004278 1.5e-29 133.7 193 45.1
Lju124C28G5 Lonicera japonica HOM05D003703 ORTHO05D004278 4.5e-29 132.1 191 44.5
BcaC07g40166 Brassica carinata HOM05D003703 ORTHO05D004278 7.7e-29 131.3 172 43.6
Carub.0005s2479 Capsella rubella HOM05D003703 ORTHO05D004278 7.7e-29 131.3 197 43.7
Peaxi162Scf00258g00023 Petunia axillaris HOM05D003703 ORTHO05D004278 7.7e-29 131.3 214 41.1
SGA_v2.0_scaffold94G28431 Striga asiatica HOM05D003703 ORTHO05D004278 7.7e-29 131.3 205 41.0
DCAR_017016 Daucus carota HOM05D003703 ORTHO05D004278 1.3e-28 130.6 192 43.2
PGR004G2865 Punica granatum HOM05D003703 ORTHO05D004278 1.7e-28 130.2 197 41.6
Actinidia22024 Actinidia chinensis HOM05D003703 ORTHO05D004278 2.2e-28 129.8 178 47.2
Solyc03g063550.1 Solanum lycopersicum HOM05D003703 ORTHO05D004278 2.2e-28 129.8 181 44.8
BcaB02g08287 Brassica carinata HOM05D003703 ORTHO05D004278 2.9e-28 129.4 172 44.2
A04p02830 Brassica napus HOM05D003703 ORTHO05D004278 2.9e-28 129.4 187 43.9
Sed0013585 Sechium edule HOM05D003703 ORTHO05D004278 3.8e-28 129.0 187 48.1
Actinidia40438 Actinidia chinensis HOM05D003703 ORTHO05D004278 5.0e-28 128.6 178 46.6
BraA04t16007Z Brassica rapa HOM05D003703 ORTHO05D004278 5.0e-28 128.6 187 43.9
THA.LOC104802486 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 6.5e-28 128.3 206 42.2
MSTRG.19899 Avicennia marina HOM05D003703 ORTHO05D004278 1.1e-27 127.5 206 40.3
AT3G57950 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 1.4e-27 127.1 174 44.8
MSTRG.6472 Avicennia marina HOM05D003703 ORTHO05D004278 1.4e-27 127.1 200 43.0
ECA236G4442 Erigeron canadensis HOM05D003703 ORTHO05D004278 1.4e-27 127.1 181 43.1
SalBow1G5050 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-27 127.1 187 41.2
SGA_v2.0_scaffold4546G54500 Striga asiatica HOM05D003703 ORTHO05D004278 1.4e-27 127.1 191 41.9
ClCG10G017430 Citrullus lanatus HOM05D003703 ORTHO05D004278 1.9e-27 126.7 183 47.0
AL5G39600 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 2.5e-27 126.3 173 45.1
PGR142G3046 Punica granatum HOM05D003703 ORTHO05D004278 3.2e-27 125.9 190 42.6
Dinv24085 Davidia involucrata HOM05D001227 ORTHO05D001082 4.2e-27 125.6 172 44.2
BcaB02g08285 Brassica carinata HOM05D003703 ORTHO05D004278 5.5e-27 125.2 169 44.4
EL10Ac3g06932 Beta vulgaris HOM05D003703 ORTHO05D004278 7.2e-27 124.8 153 45.8
TAR369G1018 Trochodendron aralioides HOM05D003703 ORTHO05D004278 7.2e-27 124.8 199 40.7
Lsat_1_v5_gn_8_74300 Lactuca sativa HOM05D003703 ORTHO05D004278 9.4e-27 124.4 208 39.4
SHI16104 Sapria himalayana HOM05D003703 ORTHO05D004278 9.4e-27 124.4 176 47.2
C04p34420 Brassica napus HOM05D003703 ORTHO05D004278 1.6e-26 123.6 185 44.3
CARHR168260 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.6e-26 123.6 175 45.1
Thhalv10006259m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 2.1e-26 123.2 172 44.2
BolC4t25006H Brassica oleracea HOM05D003703 ORTHO05D004278 2.7e-26 122.9 190 44.7
Sp6g36065 Schrenkiella parvula HOM05D003703 ORTHO05D004278 3.6e-26 122.5 211 40.8
THA.LOC104826767 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 4.7e-26 122.1 208 39.4
AL6G16900 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 1.0e-25 120.9 213 40.8
Carub.0006s0568 Capsella rubella HOM05D003703 ORTHO05D004278 1.0e-25 120.9 222 41.0
Migut.J01826 Erythranthe guttata HOM05D003703 ORTHO05D004278 1.0e-25 120.9 201 42.3
SalBow6G1024 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-25 120.6 190 44.2
SalBow6G3273 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.4e-25 120.6 190 44.2
BcaC02g09973 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-25 120.2 166 46.4
BcaC02g09974 Brassica carinata HOM05D003703 ORTHO05D004278 1.8e-25 120.2 172 43.6
PSO675G1999 Papaver somniferum HOM05D003703 ORTHO05D004278 1.1e-24 117.5 210 38.6
Aqoxy2G00073 Aquilegia oxysepala HOM05D003703 ORTHO05D004278 1.5e-24 117.1 198 37.9
Thhalv10014619m.g Eutrema salsugineum HOM05D003703 ORTHO05D004278 5.7e-24 115.2 221 38.0
C04p34430 Brassica napus HOM05D003703 ORTHO05D004278 7.4e-24 114.8 183 43.7
MBI01_g36100_MAGBIO Magnolia biondii HOM05D003703 ORTHO05D004278 7.4e-24 114.8 174 40.2
MSTRG.10837 Avicennia marina HOM05D003703 ORTHO05D004278 9.7e-24 114.4 205 39.5
AUR62024314 Chenopodium quinoa HOM05D003703 ORTHO05D004278 1.3e-23 114.0 161 41.6
Sc13g0002220 Simmondsia chinensis HOM05D003703 ORTHO05D004278 1.3e-23 114.0 196 45.9
A10p29590 Brassica napus HOM05D003703 ORTHO05D004278 1.7e-23 113.6 215 39.1
BcaC06g32542 Brassica carinata HOM05D003703 ORTHO05D004278 2.2e-23 113.2 209 39.2
Sopen03g016210 Solanum pennellii HOM05D003703 ORTHO05D004278 2.8e-23 112.8 120 53.3
AT5G06790 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.7e-23 112.5 211 39.3
BraA10t45001Z Brassica rapa HOM05D003703 ORTHO05D004278 3.7e-23 112.5 215 38.6
ECA248G0990 Erigeron canadensis HOM05D003703 ORTHO05D004278 3.7e-23 112.5 189 41.3
SalBow1G5631 Salvia bowleyana HOM05D003703 ORTHO05D004278 1.1e-22 110.9 152 42.1
Ah.04g152400 Amaranthus hybridus HOM05D003703 ORTHO05D004278 1.4e-22 110.5 152 42.8
CARHR206390 Cardamine hirsuta HOM05D003703 ORTHO05D004278 1.4e-22 110.5 219 38.8
Haze_19973 Corylus avellana HOM05D003703 ORTHO05D004278 9.1e-22 107.8 133 48.9
Eucgr.A02445 Eucalyptus grandis HOM05D003703 ORTHO05D004278 1.2e-21 107.5 177 41.8
DCAR_019841 Daucus carota HOM05D003703 ORTHO05D004278 1.0e-20 104.4 109 49.5
CsaV3_3G038930 Cucumis sativus L. HOM05D003703 ORTHO05D004278 2.2e-20 103.2 137 45.3
HanXRQChr13g0389341 Helianthus annuus HOM05D003703 ORTHO05D004278 8.5e-20 101.3 173 42.8
THA.LOC104824607 Tarenaya hassleriana HOM05D003703 ORTHO05D004278 1.5e-19 100.5 120 45.0
Sp4g24360 Schrenkiella parvula HOM05D003703 ORTHO05D004278 1.9e-19 100.1 183 40.4
BcaC06g32394 Brassica carinata HOM05D003703 ORTHO05D004278 3.2e-19 99.4 228 36.4
BolC9t59739H Brassica oleracea HOM05D003703 ORTHO05D004278 3.2e-19 99.4 228 36.4
C09p69970 Brassica napus HOM05D003703 ORTHO05D004278 4.2e-19 99.0 229 36.2
Sc19g0006980 Simmondsia chinensis HOM05D003703 ORTHO05D004278 2.3e-17 93.2 276 32.6
BcaNung04405 Brassica carinata HOM05D003703 ORTHO05D004278 6.7e-17 91.7 178 36.0
PSO339G4803 Papaver somniferum HOM05D003703 ORTHO05D004278 1.2e-16 90.9 157 40.8
BcaC02g12466 Brassica carinata HOM05D003703 ORTHO05D004278 2.6e-16 89.7 183 35.5
PSO063G6729 Papaver somniferum HOM05D003703 ORTHO05D004278 2.6e-16 89.7 140 42.1
C04p03340 Brassica napus HOM05D003703 ORTHO05D004278 5.7e-16 88.6 183 35.0
Sc25g0005120 Simmondsia chinensis HOM05D003703 ORTHO05D004278 5.7e-16 88.6 106 49.1
BolC4t21971H Brassica oleracea HOM05D003703 ORTHO05D004278 9.7e-16 87.8 183 35.0
BraA05t19267Z Brassica rapa HOM05D003703 ORTHO05D004278 2.2e-15 86.7 183 35.5
Carub.0004s2452 Capsella rubella HOM05D003703 ORTHO05D004278 2.2e-15 86.7 191 37.2
PSO017G5564 Papaver somniferum HOM05D003703 ORTHO05D004278 2.2e-15 86.7 139 41.7
A05p02750 Brassica napus HOM05D003703 ORTHO05D004278 4.8e-15 85.5 183 35.5
AT2G42180 Arabidopsis thaliana HOM05D003703 ORTHO05D004278 3.5e-13 79.3 188 34.0
AL4G40540 Arabidopsis lyrata HOM05D003703 ORTHO05D004278 6.5e-12 75.1 189 33.3
Gohir.A04G052101 Gossypium hirsutum HOM05D003703 ORTHO05D004278 3.2e-11 72.8 107 39.3
CDE02G1004 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.2e-10 70.9 168 32.7
CDE05G1581 Ceratophyllum demersum HOM05D003703 ORTHO05D004278 1.2e-10 70.9 168 33.9
Aa31sc24G60 Aethionema arabicum HOM05D003703 ORTHO05D004278 2.8e-07 59.7 78 48.7
Zm00001eb067170 Zea mays HOM05D003703 ORTHO05D004278 4.8e-07 58.9 205 29.3
Os04g0665666 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.1e-06 57.8 85 49.4
ATR0605G366 Amborella trichopoda HOM05D003703 ORTHO05D004278 1.4e-06 57.4 132 34.1
Os09g0279200 Oryza sativa ssp. japonica HOM05D003703 ORTHO05D004278 1.4e-06 57.4 65 50.8
MELO3C009637.2 Cucumis melo HOM05D003703 ORTHO05D004278 3.1e-06 56.2 125 32.0


User provided reference genes

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