Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g091010 Medicago truncatula HOM05D001245 ORTHO05D004475 2.7e-55 218.4 108 100.0
Medtr7g090980 Medicago truncatula HOM05D001245 ORTHO05D004475 3.9e-14 81.6 117 43.6
Psat6g040520 Pisum sativum HOM05D001245 ORTHO05D004475 2.0e-13 79.3 127 40.9
Medtr1g029630 Medicago truncatula HOM05D001245 ORTHO05D004475 9.7e-13 77.0 122 41.0
TPR.G30550 Trifolium pratense HOM05D001245 ORTHO05D004475 1.3e-12 76.6 115 41.7
Lj1g0014366 Lotus japonicus HOM05D001245 ORTHO05D004475 4.8e-12 74.7 125 40.8
Lalb_Chr17g0343591 Lupinus albus HOM05D001245 ORTHO05D004475 1.1e-11 73.6 139 38.1
Manes.02G168200 Manihot esculenta HOM05D001245 ORTHO05D004475 2.4e-11 72.4 49 71.4
arahy.Tifrunner.gnm1.ann1.69Q1HU Arachis hypogaea HOM05D001245 ORTHO05D004475 9.1e-11 70.5 169 32.0
Cpa.g.sc64.150 Carica papaya HOM05D001245 ORTHO05D004475 9.1e-11 70.5 49 67.3
arahy.Tifrunner.gnm1.ann1.TXAW3L Arachis hypogaea HOM05D001245 ORTHO05D004475 2.0e-10 69.3 169 32.0
Prupe.1G489800 Prunus persica HOM05D001245 ORTHO05D004475 2.6e-10 68.9 44 70.5
MD08G1159000 Malus domestica HOM05D001245 ORTHO05D004475 4.5e-10 68.2 52 61.5
Dinv14685 Davidia involucrata HOM05D001245 ORTHO05D004475 7.7e-10 67.4 38 76.3
Nitab4.5_0001543g0060 Nicotiana tabacum HOM05D001245 ORTHO05D004475 7.7e-10 67.4 109 42.2
Sabra05G0138300 Salix brachista HOM05D001245 ORTHO05D004475 7.7e-10 67.4 47 66.0
Potri.005G182500 Populus trichocarpa HOM05D001245 ORTHO05D004475 1.0e-09 67.0 49 69.4
CSS0013013 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.3e-09 66.6 51 62.7
CSS0038833 Camellia sinensis var. sinensis HOM05D001245 ORTHO05D004475 1.3e-09 66.6 51 62.7
FAN15G0291 Fragaria x ananassa HOM05D001245 ORTHO05D005230 1.3e-09 66.6 58 62.1
PGR042G0290 Punica granatum HOM05D001245 ORTHO05D004475 2.2e-09 65.9 49 67.3
Cfa018127 Carpinus fangiana HOM05D001245 ORTHO05D004475 2.9e-09 65.5 70 52.9
VMungo0647G1057 Vigna mungo HOM05D001245 ORTHO05D004475 2.9e-09 65.5 58 58.6
FAN27G0075 Fragaria x ananassa HOM05D001245 ORTHO05D005230 3.8e-09 65.1 58 62.1
FAN24G2504 Fragaria x ananassa HOM05D001245 ORTHO05D005230 5.0e-09 64.7 58 60.3
Thecc.08G132800 Theobroma cacao HOM05D001245 ORTHO05D004475 6.5e-09 64.3 48 66.7
TWI34G1866 Tripterygium wilfordii HOM05D001245 ORTHO05D004475 6.5e-09 64.3 39 69.2
Cc02_g29380 Coffea canephora HOM05D001245 ORTHO05D004475 8.5e-09 63.9 48 62.5
Gohir.A02G110400 Gossypium hirsutum HOM05D001245 ORTHO05D004475 8.5e-09 63.9 43 65.1
Gohir.D03G069003 Gossypium hirsutum HOM05D001245 ORTHO05D004475 8.5e-09 63.9 43 65.1
Gorai.013G107700 Gossypium raimondii HOM05D001245 ORTHO05D004475 8.5e-09 63.9 43 65.1
Nitab4.5_0000316g0190 Nicotiana tabacum HOM05D001245 ORTHO05D004475 8.5e-09 63.9 53 58.5
Oeu009633.1 Olea europaea HOM05D001245 ORTHO05D004475 8.5e-09 63.9 63 50.8
FvH4_2g27821 Fragaria vesca HOM05D001245 ORTHO05D004475 1.5e-08 63.2 48 68.8
FAN20G0097 Fragaria x ananassa HOM05D001245 ORTHO05D004475 1.5e-08 63.2 58 60.3
Glyma.16G005600 Glycine max HOM05D001245 ORTHO05D004475 1.5e-08 63.2 49 65.3
GSVIVG01008809001 Vitis vinifera HOM05D001245 ORTHO05D004475 1.9e-08 62.8 54 55.6
ClCG11G015970 Citrullus lanatus HOM05D001245 ORTHO05D004475 2.5e-08 62.4 52 61.5
MBI06_g35213_MAGBIO Magnolia biondii HOM05D001245 ORTHO05D004475 2.5e-08 62.4 40 67.5
Phvul.002G078200 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 2.5e-08 62.4 49 65.3
Phvul.001G070600 Phaseolus vulgaris HOM05D001245 ORTHO05D004475 3.2e-08 62.0 44 65.9
CANSAT25G1503 Cannabis sativa HOM05D001245 ORTHO05D004475 4.2e-08 61.6 49 61.2
QL09p032547 Quercus lobata HOM05D001245 ORTHO05D004475 4.2e-08 61.6 63 55.6
Sed0010713 Sechium edule HOM05D001245 ORTHO05D004475 5.5e-08 61.2 52 59.6
Ciclev10000159m.g Citrus clementina HOM05D001245 ORTHO05D004475 7.2e-08 60.8 39 66.7
HanXRQChr02g0040561 Helianthus annuus HOM05D001245 ORTHO05D004475 7.2e-08 60.8 48 56.2
Aqoxy6G00310 Aquilegia oxysepala HOM05D001245 ORTHO05D004475 9.4e-08 60.5 43 65.1
Duzib093G0162 Durio zibethinus HOM05D001245 ORTHO05D004475 9.4e-08 60.5 52 63.5
Rhsim11G0071500 Rhododendron simsii HOM05D001245 ORTHO05D004475 9.4e-08 60.5 52 57.7
Sc26g0002950 Simmondsia chinensis HOM05D001245 ORTHO05D004475 9.4e-08 60.5 39 71.8
Actinidia03424 Actinidia chinensis HOM05D001245 ORTHO05D004475 1.2e-07 60.1 51 56.9
SGA_v2.0_scaffold354G49742 Striga asiatica HOM05D001245 ORTHO05D004475 1.2e-07 60.1 66 48.5
vmacro10605 Vaccinium macrocarpon HOM05D001245 ORTHO05D004475 1.6e-07 59.7 50 58.0
Solyc01g068260.4 Solanum lycopersicum HOM05D001245 ORTHO05D004475 2.1e-07 59.3 36 69.4
DCAR_003586 Daucus carota HOM05D001245 ORTHO05D005230 2.7e-07 58.9 60 46.7
Lsat_1_v5_gn_1_6740 Lactuca sativa HOM05D001245 ORTHO05D004475 2.7e-07 58.9 37 70.3
Migut.N01819 Erythranthe guttata HOM05D001245 ORTHO05D004475 3.6e-07 58.5 43 67.4
THA.LOC104800232 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.6e-07 58.5 42 61.9
THA.LOC104810225 Tarenaya hassleriana HOM05D001245 ORTHO05D004475 3.6e-07 58.5 42 61.9
TAR229G0002 Trochodendron aralioides HOM05D001245 ORTHO05D004475 3.6e-07 58.5 49 55.1
EL10Ac1g01344 Beta vulgaris HOM05D001245 ORTHO05D004475 4.7e-07 58.2 43 65.1
Lj4C682G10 Lonicera japonica HOM05D001245 ORTHO05D004475 6.1e-07 57.8 53 54.7
MELO3C010511.2 Cucumis melo HOM05D001245 ORTHO05D004475 1.0e-06 57.0 49 61.2
BcaC08g47618 Brassica carinata HOM05D001245 ORTHO05D004475 1.8e-06 56.2 44 61.4
A07p42860 Brassica napus HOM05D001245 ORTHO05D004475 1.8e-06 56.2 44 61.4
C06p51480 Brassica napus HOM05D001245 ORTHO05D004475 1.8e-06 56.2 44 61.4
BolC6t40166H Brassica oleracea HOM05D001245 ORTHO05D004475 1.8e-06 56.2 44 61.4
BraA07t31807Z Brassica rapa HOM05D001245 ORTHO05D004475 1.8e-06 56.2 44 61.4
COL.COLO4_08845 Corchorus olitorius HOM05D001245 ORTHO05D004475 1.8e-06 56.2 53 49.1
SHI09212 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-06 55.8 44 56.8
Sp5g32500 Schrenkiella parvula HOM05D001245 ORTHO05D004475 2.3e-06 55.8 36 66.7
Hund26774 Selenicereus undatus HOM05D001245 ORTHO05D004475 3.0e-06 55.5 39 59.0
ECA233G0473 Erigeron canadensis HOM05D001245 ORTHO05D004475 4.0e-06 55.1 37 64.9
Thhalv10018076m.g Eutrema salsugineum HOM05D001245 ORTHO05D004475 4.0e-06 55.1 36 66.7
Psat0s9845g0040 Pisum sativum HOM05D001245 ORTHO05D004475 5.2e-06 54.7 28 78.6
Psat3g039720 Pisum sativum HOM05D001235 ORTHO05D004475 5.2e-06 54.7 28 78.6
CANSAT80G2764 Cannabis sativa HOM05D001245 ORTHO05D004475 6.7e-06 54.3 55 50.9
Hma1.2p1_0014F.1_g010210 Hydrangea macrophylla HOM05D001245 ORTHO05D004475 6.7e-06 54.3 44 63.6


User provided reference genes

Program Settings