Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.3e-100 369.8 189 100.0
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 9.4e-96 353.6 189 96.3
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 6.6e-81 304.3 189 83.6
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 1.2e-77 293.5 189 81.5
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 7.5e-69 264.2 199 70.9
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 7.0e-67 257.7 200 70.0
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 2.0e-66 256.1 193 72.0
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 1.9e-64 249.6 193 69.9
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 8.9e-62 240.7 195 67.2
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 2.0e-61 239.6 189 69.3
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 6.4e-60 234.6 199 65.3
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.1e-59 233.8 199 64.8
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 7.3e-56 221.1 195 61.5
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 2.8e-55 219.2 196 60.7
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 2.3e-54 216.1 194 57.7
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 4.0e-54 215.3 194 57.7
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 5.2e-54 214.9 192 59.4
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 6.8e-54 214.5 198 59.1
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 8.9e-54 214.2 191 60.7
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 8.9e-54 214.2 189 58.2
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 8.9e-54 214.2 197 60.9
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 1.2e-53 213.8 198 60.6
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 1.2e-53 213.8 191 58.6
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 1.2e-53 213.8 145 78.6
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 2.0e-53 213.0 142 70.4
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 2.6e-53 212.6 141 70.2
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 3.4e-53 212.2 194 58.8
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 5.8e-53 211.5 194 58.2
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 5.8e-53 211.5 194 58.2
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 7.5e-53 211.1 191 59.7
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 9.9e-53 210.7 194 59.3
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 1.3e-52 210.3 188 58.5
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 1.3e-52 210.3 191 57.6
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 1.3e-52 210.3 195 57.4
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.3e-52 210.3 197 58.4
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.9e-52 209.1 164 64.0
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 2.9e-52 209.1 140 70.7
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 3.7e-52 208.8 190 60.0
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 4.9e-52 208.4 245 51.4
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 6.4e-52 208.0 194 59.3
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 6.4e-52 208.0 169 62.7
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 8.3e-52 207.6 193 57.5
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.1e-51 207.2 190 59.5
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.1e-51 207.2 190 59.5
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 1.9e-51 206.5 188 56.4
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.9e-51 206.5 164 64.0
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 4.1e-51 205.3 186 56.5
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 4.1e-51 205.3 199 59.3
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 9.2e-51 204.1 195 57.9
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 9.2e-51 204.1 195 56.4
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 1.2e-50 203.8 174 60.3
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 1.2e-50 203.8 189 57.7
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 2.1e-50 203.0 166 62.7
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 2.7e-50 202.6 199 56.3
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 3.5e-50 202.2 190 58.4
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 4.6e-50 201.8 196 57.7
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 4.6e-50 201.8 115 87.8
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 6.0e-50 201.4 185 56.8
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.3e-49 200.3 189 58.2
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 1.3e-49 200.3 191 58.6
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 3.0e-49 199.1 196 57.7
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 3.9e-49 198.7 181 59.1
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 5.1e-49 198.4 193 56.0
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 5.1e-49 198.4 197 57.4
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 5.1e-49 198.4 190 55.3
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 5.1e-49 198.4 190 55.3
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 5.1e-49 198.4 181 57.5
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 1.1e-48 197.2 198 55.6
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 3.3e-48 195.7 193 55.4
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 5.6e-48 194.9 142 64.8
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 7.3e-48 194.5 181 60.2
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 1.2e-47 193.7 125 70.4
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 1.2e-47 193.7 125 70.4
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 1.2e-47 193.7 196 56.6
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 1.2e-47 193.7 139 66.9
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.6e-47 193.4 201 54.7
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.6e-47 193.4 213 53.1
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 2.1e-47 193.0 142 65.5
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 2.8e-47 192.6 186 58.6
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 2.8e-47 192.6 194 55.2
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 3.6e-47 192.2 142 64.8
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 3.6e-47 192.2 142 65.5
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 3.6e-47 192.2 176 56.8
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 4.7e-47 191.8 125 70.4
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 1.8e-46 189.9 191 55.5
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.8e-46 189.9 190 53.7
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 4.0e-46 188.7 184 57.6
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 5.2e-46 188.3 192 53.6
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 6.8e-46 188.0 191 54.5
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 8.9e-46 187.6 190 55.8
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 2.0e-45 186.4 185 55.7
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 2.6e-45 186.0 186 54.8
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 4.4e-45 185.3 191 53.4
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 1.7e-44 183.3 217 51.6
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 6.4e-44 181.4 224 49.1
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 1.4e-43 180.3 207 49.8
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 1.4e-43 180.3 136 62.5
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 3.2e-43 179.1 144 59.7
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 4.2e-43 178.7 111 73.9
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.2e-42 177.2 136 60.3
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 6.6e-41 171.4 199 49.7
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 1.5e-40 170.2 217 48.4
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 4.3e-40 168.7 113 70.8
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 1.2e-39 167.2 151 55.6
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.2e-39 167.2 112 68.8
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 1.6e-39 166.8 116 66.4
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 1.1e-38 164.1 116 67.2
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 6.9e-38 161.4 137 54.0
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.5e-37 160.2 151 58.9
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 7.6e-37 157.9 134 57.5
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 1.7e-36 156.8 113 61.1
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 1.6e-34 150.2 155 57.4
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 2.7e-34 149.4 152 57.2
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 3.5e-34 149.1 91 74.7
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 5.1e-33 145.2 129 58.1
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 1.5e-32 143.7 109 59.6
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 4.3e-32 142.1 119 63.9
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 4.8e-31 138.7 158 53.8
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 4.5e-29 132.1 93 64.5
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 5.8e-29 131.7 89 66.3
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 2.9e-28 129.4 97 57.7
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 5.4e-27 125.2 109 51.4
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 1.0e-25 120.9 116 50.9
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 1.1e-22 110.9 73 64.4
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 4.0e-22 109.0 115 54.8
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 4.0e-22 109.0 89 55.1
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 6.4e-20 101.7 110 43.6
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 2.7e-18 96.3 113 50.4
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 2.5e-16 89.7 156 42.3
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 8.2e-15 84.7 78 57.7
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 1.5e-13 80.5 109 37.6
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 2.9e-12 76.3 132 39.4
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 4.1e-06 55.8 43 55.8
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 9.0e-06 54.7 56 48.2


User provided reference genes

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