Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g080860 Medicago truncatula HOM05D004951 ORTHO05D005840 1.8e-125 452.6 233 100.0
Psat6g222440 Pisum sativum HOM05D004951 ORTHO05D005840 3.0e-91 339.0 237 75.5
TPR.G15148 Trifolium pratense HOM05D004951 ORTHO05D005840 2.5e-90 335.9 238 77.3
Ca_08030_v3 Cicer arietinum L. HOM05D004951 ORTHO05D005840 9.5e-90 334.0 237 75.1
Glyma.18G246500 Glycine max HOM05D004951 ORTHO05D005840 3.5e-76 288.9 237 67.9
Glyma.09G246500 Glycine max HOM05D004951 ORTHO05D005840 1.5e-74 283.5 237 65.8
Lj1g0015493 Lotus japonicus HOM05D004951 ORTHO05D005840 2.5e-74 282.7 237 62.9
Lalb_Chr03g0040521 Lupinus albus HOM05D004951 ORTHO05D005840 3.3e-74 282.3 236 65.7
VMungo1383G3289 Vigna mungo HOM05D004951 ORTHO05D005840 1.6e-73 280.0 237 65.0
arahy.Tifrunner.gnm1.ann1.T7R5G6 Arachis hypogaea HOM05D004951 ORTHO05D005840 4.4e-71 271.9 238 61.8
arahy.Tifrunner.gnm1.ann1.5C4441 Arachis hypogaea HOM05D004951 ORTHO05D005840 7.6e-71 271.2 236 62.3
Phvul.008G050600 Phaseolus vulgaris HOM05D004951 ORTHO05D005840 4.9e-70 268.5 237 64.1
arahy.Tifrunner.gnm1.ann1.1I2LZG Arachis hypogaea HOM05D004951 ORTHO05D005840 3.5e-68 262.3 238 59.7
GSVIVG01009867001 Vitis vinifera HOM05D004951 ORTHO05D005840 2.1e-65 253.1 238 57.1
CSS0031211 Camellia sinensis var. sinensis HOM05D004951 ORTHO05D005840 1.7e-62 243.4 240 57.5
MD05G1155200 Malus domestica HOM05D004951 ORTHO05D005840 2.2e-62 243.0 237 55.7
MD10G1149500 Malus domestica HOM05D004951 ORTHO05D005840 8.4e-62 241.1 233 54.5
Atru.chr2.1521 Acer truncatum HOM05D004951 ORTHO05D005840 1.1e-61 240.7 235 56.2
QL02p011069 Quercus lobata HOM05D004951 ORTHO05D005840 1.4e-61 240.4 233 57.5
Ciclev10002352m.g Citrus clementina HOM05D004951 ORTHO05D005840 5.4e-61 238.4 235 55.3
TAR381G0914 Trochodendron aralioides HOM05D004951 ORTHO05D005840 9.3e-61 237.7 239 56.5
Dinv39502 Davidia involucrata HOM05D004951 ORTHO05D005840 1.2e-60 237.3 238 54.6
PGR031G1064 Punica granatum HOM05D004951 ORTHO05D005840 2.7e-60 236.1 233 53.6
Actinidia37925 Actinidia chinensis HOM05D004951 ORTHO05D005840 6.0e-60 235.0 237 56.1
Gohir.A09G014000 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.0e-60 235.0 233 56.7
Gohir.D02G097900 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.0e-60 235.0 233 56.7
CiPaw.08G064600 Carya illinoinensis HOM05D004951 ORTHO05D005840 7.9e-60 234.6 234 56.4
Gorai.005G111600 Gossypium raimondii HOM05D004951 ORTHO05D005840 7.9e-60 234.6 233 56.7
Gohir.A07G207200 Gossypium hirsutum HOM05D004951 ORTHO05D005840 1.8e-59 233.4 233 56.2
Nn5g29279 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.8e-59 233.4 231 55.4
Eucgr.E00855 Eucalyptus grandis HOM05D004951 ORTHO05D005840 2.3e-59 233.0 235 55.3
Rhsim06G0023300 Rhododendron simsii HOM05D004951 ORTHO05D005840 2.3e-59 233.0 235 56.2
Thecc.08G041400 Theobroma cacao HOM05D004951 ORTHO05D005840 2.3e-59 233.0 233 54.9
Hma1.2p1_0638F.1_g193670 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 6.7e-59 231.5 236 52.5
Cpa.g.sc26.26 Carica papaya HOM05D004951 ORTHO05D005840 8.7e-59 231.1 231 53.7
ClCG11G002570 Citrullus lanatus HOM05D004951 ORTHO05D005840 8.7e-59 231.1 201 59.7
Potri.005G236800 Populus trichocarpa HOM05D004951 ORTHO05D005840 1.5e-58 230.3 235 53.6
Cfa013928 Carpinus fangiana HOM05D004951 ORTHO05D005840 2.5e-58 229.6 238 54.2
Sabra05G0183100 Salix brachista HOM05D004951 ORTHO05D005840 3.3e-58 229.2 237 53.2
THA.LOC104809415 Tarenaya hassleriana HOM05D004951 ORTHO05D005840 3.3e-58 229.2 200 58.0
Duzib116G0591 Durio zibethinus HOM05D004951 ORTHO05D005840 9.6e-58 227.6 233 54.9
Manes.05G149800 Manihot esculenta HOM05D004951 ORTHO05D005840 1.3e-57 227.3 235 54.0
COL.COLO4_26170 Corchorus olitorius HOM05D004951 ORTHO05D005840 1.6e-57 226.9 233 53.2
vmacro21713 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 1.6e-57 226.9 217 56.2
vmacro14381 Vaccinium macrocarpon HOM05D004951 ORTHO05D005840 2.8e-57 226.1 225 54.2
Actinidia15407 Actinidia chinensis HOM05D004951 ORTHO05D005840 8.1e-57 224.6 232 54.3
COL.COLO4_20267 Corchorus olitorius HOM05D004951 ORTHO05D005840 8.1e-57 224.6 202 56.4
PSO675G8856 Papaver somniferum HOM05D004951 ORTHO05D005840 8.1e-57 224.6 231 51.5
Sed0001853 Sechium edule HOM05D004951 ORTHO05D005840 8.1e-57 224.6 234 53.4
CsaV3_3G045700 Cucumis sativus L. HOM05D004951 ORTHO05D005840 1.4e-56 223.8 234 53.4
ClCG05G018480 Citrullus lanatus HOM05D004951 ORTHO05D005840 1.8e-56 223.4 189 60.3
Potri.002G024601 Populus trichocarpa HOM05D004951 ORTHO05D005840 5.3e-56 221.9 236 51.3
Gohir.A07G207300 Gossypium hirsutum HOM05D004951 ORTHO05D005840 6.9e-56 221.5 232 53.4
Sc02g0008460 Simmondsia chinensis HOM05D004951 ORTHO05D005840 2.6e-55 219.5 239 54.4
PSO541G0679 Papaver somniferum HOM05D004951 ORTHO05D005840 3.4e-55 219.2 210 52.4
PGR031G3408 Punica granatum HOM05D004951 ORTHO05D005840 9.9e-55 217.6 190 57.9
Oeu056857.1 Olea europaea HOM05D004951 ORTHO05D005840 1.3e-54 217.2 188 58.0
CANSAT78G0251 Cannabis sativa HOM05D004951 ORTHO05D005840 1.7e-54 216.9 239 50.2
BraA02t07047Z Brassica rapa HOM05D004951 ORTHO05D005840 3.8e-54 215.7 195 54.9
Eucgr.F02088 Eucalyptus grandis HOM05D004951 ORTHO05D005840 3.8e-54 215.7 235 52.3
A02p20120 Brassica napus HOM05D004951 ORTHO05D005840 6.4e-54 214.9 190 55.8
TWI34G1799 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.1e-53 214.2 234 49.1
TWI56G1488 Tripterygium wilfordii HOM05D004951 ORTHO05D005840 1.1e-53 214.2 234 50.4
BcaC03g15607 Brassica carinata HOM05D004951 ORTHO05D005840 1.4e-53 213.8 195 54.4
BolC2t09323H Brassica oleracea HOM05D004951 ORTHO05D005840 1.4e-53 213.8 195 54.4
Oeu024529.1 Olea europaea HOM05D004951 ORTHO05D005840 1.4e-53 213.8 232 50.0
PSO675G7262 Papaver somniferum HOM05D004951 ORTHO05D005840 2.4e-53 213.0 232 48.7
C02p33810 Brassica napus HOM05D004951 ORTHO05D005840 7.1e-53 211.5 190 54.7
Carub.0002s2250 Capsella rubella HOM05D004951 ORTHO05D005840 2.1e-52 209.9 188 54.8
Prupe.8G188100 Prunus persica HOM05D004951 ORTHO05D005840 2.1e-52 209.9 231 54.1
AL2G35650 Arabidopsis lyrata HOM05D004951 ORTHO05D005840 2.7e-52 209.5 188 54.3
MSTRG.1208 Avicennia marina HOM05D004951 ORTHO05D005840 4.6e-52 208.8 233 48.9
Thhalv10019169m.g Eutrema salsugineum HOM05D004951 ORTHO05D005840 4.6e-52 208.8 188 55.3
Aa31LG4G5890 Aethionema arabicum HOM05D004951 ORTHO05D005840 1.8e-51 206.8 232 49.6
Ah.02g126690 Amaranthus hybridus HOM05D004951 ORTHO05D005840 1.8e-51 206.8 202 56.9
Sp5g30770 Schrenkiella parvula HOM05D004951 ORTHO05D005840 1.8e-51 206.8 192 53.6
Lsat_1_v5_gn_8_80440 Lactuca sativa HOM05D004951 ORTHO05D005840 2.3e-51 206.5 229 49.8
AT1G75670 Arabidopsis thaliana HOM05D004951 ORTHO05D005840 3.0e-51 206.1 188 53.7
Lalb_Chr01g0021631 Lupinus albus HOM05D004951 ORTHO05D005840 3.0e-51 206.1 235 53.2
SGA_v2.0_scaffold11G05895 Striga asiatica HOM05D004951 ORTHO05D005840 3.9e-51 205.7 233 47.2
Sopen05g032630 Solanum pennellii HOM05D004951 ORTHO05D005840 5.1e-51 205.3 235 47.2
SalBow8G2430 Salvia bowleyana HOM05D004951 ORTHO05D005840 6.7e-51 204.9 230 48.7
HanXRQChr02g0039471 Helianthus annuus HOM05D004951 ORTHO05D005840 8.7e-51 204.5 229 49.8
Solyc05g054140.3 Solanum lycopersicum HOM05D004951 ORTHO05D005840 8.7e-51 204.5 235 47.2
ECA236G4786 Erigeron canadensis HOM05D004951 ORTHO05D005840 1.5e-50 203.8 203 53.2
HanXRQChr10g0300951 Helianthus annuus HOM05D004951 ORTHO05D005840 1.9e-50 203.4 181 55.2
CAN.G103.3 Capsicum annuum HOM05D004951 ORTHO05D005840 2.5e-50 203.0 197 52.8
Cc10_g01890 Coffea canephora HOM05D004951 ORTHO05D005840 4.3e-50 202.2 231 48.1
CARHR069060 Cardamine hirsuta HOM05D004951 ORTHO05D005840 5.6e-50 201.8 187 53.5
RcHm_v2.0_Chr6g0282531 Rosa chinensis HOM05D004951 ORTHO05D005840 5.6e-50 201.8 247 45.7
Actinidia28598 Actinidia chinensis HOM05D004951 ORTHO05D005840 1.3e-49 200.7 236 51.7
PGSC0003DMG400008458 Solanum tuberosum HOM05D004951 ORTHO05D005840 1.6e-49 200.3 235 46.8
FvH4_2g17590 Fragaria vesca HOM05D004951 ORTHO05D005840 2.1e-49 199.9 249 45.4
EL10Ac1g02264 Beta vulgaris HOM05D004951 ORTHO05D005840 3.7e-49 199.1 237 48.5
Migut.G00984 Erythranthe guttata HOM05D004951 ORTHO05D005840 6.2e-49 198.4 201 50.7
FAN24G1417 Fragaria x ananassa HOM05D004951 ORTHO05D005840 8.2e-49 198.0 249 45.0
Nn1g08637 Nelumbo nucifera HOM05D004951 ORTHO05D005840 1.1e-48 197.6 176 60.8
TAR625G0428 Trochodendron aralioides HOM05D004951 ORTHO05D005840 1.4e-48 197.2 205 55.1
BcaC08g47055 Brassica carinata HOM05D004951 ORTHO05D005840 2.4e-48 196.4 197 52.3
FAN15G2157 Fragaria x ananassa HOM05D004951 ORTHO05D005840 3.1e-48 196.1 249 44.6
AUR62035728 Chenopodium quinoa HOM05D004951 ORTHO05D005840 5.3e-48 195.3 231 48.9
AUR62035440 Chenopodium quinoa HOM05D004951 ORTHO05D005840 6.9e-48 194.9 231 48.5
Peaxi162Scf00186g00023 Petunia axillaris HOM05D004951 ORTHO05D005840 1.5e-47 193.7 210 48.6
Dinv31828 Davidia involucrata HOM05D004951 ORTHO05D005840 2.0e-47 193.4 201 53.2
Aqoxy3G00621 Aquilegia oxysepala HOM05D004951 ORTHO05D005840 7.6e-47 191.4 219 47.9
FAN27G0910 Fragaria x ananassa HOM05D004951 ORTHO05D005840 7.6e-47 191.4 267 43.1
Sed0010580 Sechium edule HOM05D004951 ORTHO05D005840 7.6e-47 191.4 218 49.1
HPP92_017328 Vanilla planifolia HOM05D004951 ORTHO05D005840 7.6e-47 191.4 215 50.2
Migut.C00815 Erythranthe guttata HOM05D004951 ORTHO05D005840 1.7e-46 190.3 199 49.7
Nitab4.5_0001242g0070 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.7e-46 190.3 233 46.8
Haze_22610 Corylus avellana HOM05D004951 ORTHO05D005840 3.8e-46 189.1 256 45.7
FAN15G3167 Fragaria x ananassa HOM05D004951 ORTHO05D005840 4.9e-46 188.7 187 51.3
Atru.chr13.322 Acer truncatum HOM05D004951 ORTHO05D005840 1.9e-45 186.8 198 53.5
Nitab4.5_0014171g0010 Nicotiana tabacum HOM05D004951 ORTHO05D005840 1.6e-44 183.7 210 47.1
CDE12G0586 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 2.1e-44 183.3 180 52.8
unitig_8.g4914 Utricularia gibba HOM05D004951 ORTHO05D005840 3.0e-43 179.5 199 47.2
CDE05G3598 Ceratophyllum demersum HOM05D004951 ORTHO05D005840 4.3e-42 175.6 180 50.6
Gohir.A02G093500 Gossypium hirsutum HOM05D004951 ORTHO05D005840 8.2e-41 171.4 142 62.0
BcaB05g24929 Brassica carinata HOM05D000120 ORTHO05D000068 1.5e-39 167.2 156 52.6
Os12g0533600 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 4.2e-37 159.1 238 41.6
DCAR_008455 Daucus carota HOM05D004951 ORTHO05D005840 1.2e-36 157.5 167 47.3
Lj4A795G31 Lonicera japonica HOM05D004951 ORTHO05D005840 6.1e-36 155.2 122 63.9
Oeu024522.1 Olea europaea HOM05D004951 ORTHO05D005840 1.8e-35 153.7 149 53.7
ATR0068G029 Amborella trichopoda HOM05D004951 ORTHO05D005840 2.3e-35 153.3 234 43.2
MBI05_g38365_MAGBIO Magnolia biondii HOM05D004951 ORTHO05D005840 3.0e-35 152.9 237 41.8
Os06g0168400 Oryza sativa ssp. japonica HOM05D004951 ORTHO05D005840 8.2e-33 144.8 154 50.0
Zm00001eb410680 Zea mays HOM05D004951 ORTHO05D005840 8.2e-33 144.8 227 40.1
SEGI_29847 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 1.1e-32 144.4 240 39.6
Mapoly0115s0026 Marchantia polymorpha HOM05D004951 ORTHO05D005840 1.8e-27 127.1 233 36.9
CAN.G230.10 Capsicum annuum HOM05D004951 ORTHO05D005840 3.9e-27 125.9 128 49.2
AagrBONN_evm.TU.Sc2ySwM_344.4244 Anthoceros agrestis HOM05D004951 ORTHO05D005840 9.1e-24 114.8 183 39.3
AagrBONN_evm.TU.Sc2ySwM_368.3390 Anthoceros agrestis HOM05D004951 ORTHO05D005840 1.2e-23 114.4 184 39.7
Pp3c15_23380 Physcomitrium patens HOM05D004951 ORTHO05D005840 2.0e-23 113.6 231 34.6
SMO356G0424 Selaginella moellendorffii HOM05D004951 ORTHO05D005840 2.6e-23 113.2 179 38.5
Sed0021847 Sechium edule HOM05D004951 ORTHO05D005840 6.5e-22 108.6 147 43.5
ATR0585G020 Amborella trichopoda HOM05D004951 ORTHO05D005840 1.3e-17 94.4 88 56.8
Hma1.2p1_2299F.1_g319190 Hydrangea macrophylla HOM05D004951 ORTHO05D005840 1.1e-16 91.3 76 60.5
SEGI_15858 Sequoiadendron giganteum HOM05D004951 ORTHO05D005840 2.6e-15 86.7 97 46.4
PGSC0003DMG400019052 Solanum tuberosum HOM05D004951 ORTHO05D005840 4.5e-15 85.9 115 43.5
BolC6t40000H Brassica oleracea HOM05D004951 ORTHO05D005840 1.3e-09 67.8 53 56.6
Cre02.g086750 Chlamydomonas reinhardtii HOM05D004951 ORTHO05D005840 2.2e-09 67.0 180 24.4


User provided reference genes

Program Settings