Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g066990 Medicago truncatula HOM05D007172 ORTHO05D009267 3.8e-142 509.6 696 100.0
Psat3g131160 Pisum sativum HOM05D007172 ORTHO05D009267 4.2e-109 399.8 696 84.5
Ca_07613_v3 Cicer arietinum L. HOM05D007172 ORTHO05D009267 1.8e-104 384.4 696 88.9
TPR.G1551 Trifolium pratense HOM05D007172 ORTHO05D009267 1.8e-104 384.4 694 89.2
Lj1g0020442 Lotus japonicus HOM05D007172 ORTHO05D009267 3.0e-54 217.6 646 79.6
Lalb_Chr03g0043001 Lupinus albus HOM05D007172 ORTHO05D009267 1.6e-47 195.3 692 62.0
Glyma.07G145700 Glycine max HOM05D007172 ORTHO05D009267 5.6e-45 186.8 690 67.0
arahy.Tifrunner.gnm1.ann1.1Q23J3 Arachis hypogaea HOM05D007172 ORTHO05D009267 2.1e-39 168.3 673 73.7
RcHm_v2.0_Chr3g0463821 Rosa chinensis HOM05D007172 ORTHO05D009267 6.0e-39 166.8 145 60.0
Phvul.008G107400 Phaseolus vulgaris HOM05D007172 ORTHO05D009267 1.3e-38 165.6 690 66.5
FvH4_6g11981 Fragaria vesca HOM05D007172 ORTHO05D009267 1.1e-37 162.5 147 57.1
FAN14G1264 Fragaria x ananassa HOM05D007172 ORTHO05D009267 1.1e-37 162.5 147 57.1
FAN14G1160 Fragaria x ananassa HOM05D007172 ORTHO05D009267 1.9e-37 161.8 147 56.5
MD12G1160500 Malus domestica HOM05D007172 ORTHO05D009267 3.3e-37 161.0 145 57.2
Thecc.05G021800 Theobroma cacao HOM05D007172 ORTHO05D009267 3.3e-37 161.0 145 57.2
Gohir.D01G215100 Gossypium hirsutum HOM05D007172 ORTHO05D009267 4.3e-37 160.6 145 58.6
Gorai.002G261200 Gossypium raimondii HOM05D007172 ORTHO05D009267 4.3e-37 160.6 145 58.6
Prupe.6G271000 Prunus persica HOM05D007172 ORTHO05D009267 4.3e-37 160.6 145 57.9
FAN09G1061 Fragaria x ananassa HOM05D007172 ORTHO05D009267 9.6e-37 159.5 147 55.8
arahy.Tifrunner.gnm1.ann1.F3RMTH Arachis hypogaea HOM05D007172 ORTHO05D009267 1.3e-36 159.1 151 55.0
Gohir.A01G225400 Gossypium hirsutum HOM05D007172 ORTHO05D009267 3.6e-36 157.5 143 58.0
VMungo1383G0941 Vigna mungo HOM05D007172 ORTHO05D009267 3.6e-36 157.5 148 58.1
FAN05G4216 Fragaria x ananassa HOM05D007172 ORTHO05D009267 4.8e-36 157.1 147 55.8
FAN02G2761 Fragaria x ananassa HOM05D007172 ORTHO05D009267 6.2e-36 156.8 147 55.1
Rhsim04G0166200 Rhododendron simsii HOM05D007172 ORTHO05D009267 1.8e-35 155.2 145 57.2
TWI74G0200 Tripterygium wilfordii HOM05D007172 ORTHO05D009267 2.4e-35 154.8 146 55.5
Haze_20955 Corylus avellana HOM05D007172 ORTHO05D009267 5.3e-35 153.7 146 56.2
Duzib093G1512 Durio zibethinus HOM05D007172 ORTHO05D009267 5.3e-35 153.7 143 56.6
Cfa017253 Carpinus fangiana HOM05D007172 ORTHO05D009267 6.9e-35 153.3 146 55.5
Aqoxy1G00702 Aquilegia oxysepala HOM05D007172 ORTHO05D009267 9.0e-35 152.9 147 53.7
PGR004G2241 Punica granatum HOM05D007172 ORTHO05D009267 9.0e-35 152.9 146 54.1
ClCG04G007230 Citrullus lanatus HOM05D007172 ORTHO05D009267 1.5e-34 152.1 145 54.5
QL11p035953 Quercus lobata HOM05D007172 ORTHO05D009267 2.6e-34 151.4 144 56.2
AT3G09060 Arabidopsis thaliana HOM05D007172 ORTHO05D009267 5.8e-34 150.2 148 52.0
Dinv14529 Davidia involucrata HOM05D007172 ORTHO05D009267 7.6e-34 149.8 142 57.0
Dinv35510 Davidia involucrata HOM05D007172 ORTHO05D009267 7.6e-34 149.8 142 57.0
THA.LOC104823283 Tarenaya hassleriana HOM05D007172 ORTHO05D009267 9.9e-34 149.4 145 53.8
Solyc09g014210.3 Solanum lycopersicum HOM05D007172 ORTHO05D009267 1.3e-33 149.1 145 53.8
AL3G20120 Arabidopsis lyrata HOM05D007172 ORTHO05D009267 1.7e-33 148.7 148 51.4
BcaB04g18558 Brassica carinata HOM05D007172 ORTHO05D009267 1.7e-33 148.7 147 50.3
Sed0007776 Sechium edule HOM05D007172 ORTHO05D009267 2.2e-33 148.3 145 55.9
MELO3C003226.2 Cucumis melo HOM05D007172 ORTHO05D009267 4.9e-33 147.1 145 53.1
Manes.08G087900 Manihot esculenta HOM05D007172 ORTHO05D009267 6.4e-33 146.7 145 53.8
TAR636G1500 Trochodendron aralioides HOM05D007172 ORTHO05D009267 6.4e-33 146.7 145 51.0
Hma1.2p1_0244F.1_g101240 Hydrangea macrophylla HOM05D007172 ORTHO05D009267 8.4e-33 146.4 145 54.5
AUR62025815 Chenopodium quinoa HOM05D007172 ORTHO05D009267 1.1e-32 146.0 148 50.0
COL.COLO4_14594 Corchorus olitorius HOM05D007172 ORTHO05D009267 1.1e-32 146.0 137 54.7
GSVIVG01024665001 Vitis vinifera HOM05D007172 ORTHO05D009267 1.1e-32 146.0 145 51.7
C03p43820 Brassica napus HOM05D007172 ORTHO05D009267 1.9e-32 145.2 147 50.3
Hma1.2p1_0244F.1_g101250 Hydrangea macrophylla HOM05D007172 ORTHO05D009267 1.9e-32 145.2 142 54.9
Sopen09g007080 Solanum pennellii HOM05D007172 ORTHO05D009267 1.9e-32 145.2 145 53.1
PGSC0003DMG400020346 Solanum tuberosum HOM05D007172 ORTHO05D009267 1.9e-32 145.2 145 53.1
CANSAT35G0540 Cannabis sativa HOM05D007172 ORTHO05D009267 3.2e-32 144.4 145 52.4
CsaV3_4G026020 Cucumis sativus L. HOM05D007172 ORTHO05D009267 4.2e-32 144.1 146 50.7
Thhalv10020196m.g Eutrema salsugineum HOM05D007172 ORTHO05D009267 7.1e-32 143.3 148 49.3
CSS0033736 Camellia sinensis var. sinensis HOM05D007172 ORTHO05D009267 9.3e-32 142.9 143 55.9
CSS0036168 Camellia sinensis var. sinensis HOM05D007172 ORTHO05D009267 9.3e-32 142.9 143 55.9
BcaC01g04211 Brassica carinata HOM05D007172 ORTHO05D009267 1.2e-31 142.5 147 49.7
BolC3t16650H Brassica oleracea HOM05D007172 ORTHO05D009267 1.2e-31 142.5 147 49.7
CiPaw.09G206300 Carya illinoinensis HOM05D007172 ORTHO05D009267 1.2e-31 142.5 144 52.1
A03p36160 Brassica napus HOM05D007172 ORTHO05D009267 1.6e-31 142.1 147 49.0
CARHR083420 Cardamine hirsuta HOM05D007172 ORTHO05D009267 2.1e-31 141.7 148 50.0
Carub.0003s0822 Capsella rubella HOM05D007172 ORTHO05D009267 3.5e-31 141.0 146 49.3
BraA03t12787Z Brassica rapa HOM05D007172 ORTHO05D009267 4.6e-31 140.6 147 49.0
EL10Ac5g11526 Beta vulgaris HOM05D007172 ORTHO05D009267 6.0e-31 140.2 145 49.7
PSO339G1228 Papaver somniferum HOM05D007172 ORTHO05D009267 7.9e-31 139.8 146 53.4
AUR62042945 Chenopodium quinoa HOM05D007172 ORTHO05D009267 1.0e-30 139.4 149 49.0
Cc06_g01640 Coffea canephora HOM05D007172 ORTHO05D009267 1.0e-30 139.4 147 52.4
Nn2g11372 Nelumbo nucifera HOM05D007172 ORTHO05D009267 3.9e-30 137.5 147 47.6
PSO384G3372 Papaver somniferum HOM05D007172 ORTHO05D009267 3.9e-30 137.5 146 53.4
CAN.G1003.15 Capsicum annuum HOM05D007172 ORTHO05D009267 1.1e-29 136.0 146 52.7
Ciclev10011394m.g Citrus clementina HOM05D007172 ORTHO05D009267 1.1e-29 136.0 141 49.6
Potri.016G111600 Populus trichocarpa HOM05D007172 ORTHO05D009267 1.1e-29 136.0 145 51.7
Lsat_1_v5_gn_9_36040 Lactuca sativa HOM05D007172 ORTHO05D009267 1.5e-29 135.6 143 54.5
Ah.12g060070 Amaranthus hybridus HOM05D007172 ORTHO05D009267 1.9e-29 135.2 144 47.2
Sc07g0006830 Simmondsia chinensis HOM05D007172 ORTHO05D009267 1.9e-29 135.2 147 49.0
Nitab4.5_0000008g0800 Nicotiana tabacum HOM05D007172 ORTHO05D009267 2.5e-29 134.8 146 49.3
Hund23873 Selenicereus undatus HOM05D007172 ORTHO05D009267 3.3e-29 134.4 142 49.3
Aa31LG3G1590 Aethionema arabicum HOM05D007172 ORTHO05D009267 7.4e-29 133.3 148 45.3
Sabra16G0107800 Salix brachista HOM05D007172 ORTHO05D009267 9.6e-29 132.9 145 51.0
Actinidia01117 Actinidia chinensis HOM05D007172 ORTHO05D009267 1.3e-28 132.5 145 51.0
Lj2C80T7 Lonicera japonica HOM05D007172 ORTHO05D009267 1.6e-28 132.1 145 49.7
HanXRQChr10g0287011 Helianthus annuus HOM05D007172 ORTHO05D009267 2.8e-28 131.3 137 54.0
Nitab4.5_0001837g0040 Nicotiana tabacum HOM05D007172 ORTHO05D009267 8.1e-28 129.8 146 47.3
Sp3g07510 Schrenkiella parvula HOM05D007172 ORTHO05D009267 1.1e-27 129.4 148 44.6
ATR0618G313 Amborella trichopoda HOM05D007172 ORTHO05D009267 2.4e-27 128.3 142 46.5
SHI12786 Sapria himalayana HOM05D007172 ORTHO05D009267 5.3e-27 127.1 143 49.0
MBI05_g03458_MAGBIO Magnolia biondii HOM05D007172 ORTHO05D009267 1.5e-26 125.6 150 47.3
SalBow5G3690 Salvia bowleyana HOM05D007172 ORTHO05D009267 4.5e-26 124.0 149 45.0
DCAR_018726 Daucus carota HOM05D007172 ORTHO05D009267 7.6e-26 123.2 143 46.2
MSTRG.5594 Avicennia marina HOM05D007172 ORTHO05D009267 1.0e-25 122.9 146 45.2
Eucgr.K02997 Eucalyptus grandis HOM05D007172 ORTHO05D009267 1.3e-25 122.5 151 47.7
Migut.J00222 Erythranthe guttata HOM05D007172 ORTHO05D009267 3.8e-25 120.9 145 44.8
CDE02G0235 Ceratophyllum demersum HOM05D007172 ORTHO05D009267 2.3e-22 111.7 145 42.8
MD04G1147200 Malus domestica HOM05D007172 ORTHO05D009267 3.2e-16 91.3 147 36.7
Oeu030527.1 Olea europaea HOM05D000095 ORTHO05D000330 3.9e-14 84.3 100 47.0
SEGI_16355 Sequoiadendron giganteum HOM05D004271 ORTHO05D006011 1.1e-13 82.8 146 31.5
CSS0003779 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 4.5e-10 70.9 143 35.0
CSS0037924 Camellia sinensis var. sinensis HOM05D002986 ORTHO05D003966 1.3e-09 69.3 143 34.3
Zm00001eb367330 Zea mays HOM05D007172 ORTHO05D009267 1.3e-09 69.3 133 33.1
Rhsim07G0001900 Rhododendron simsii HOM05D002986 ORTHO05D007611 2.2e-09 68.6 143 31.5
FvH4_7g08341 Fragaria vesca HOM05D002986 ORTHO05D003966 2.9e-09 68.2 142 32.4
MSTRG.28276 Avicennia marina HOM05D002986 ORTHO05D003966 5.0e-09 67.4 131 32.1
Os01g0852900 Oryza sativa ssp. japonica HOM05D007172 ORTHO05D009267 8.5e-09 66.6 133 32.3
SEGI_18794 Sequoiadendron giganteum HOM05D002986 ORTHO05D007611 2.5e-08 65.1 146 28.1
Hma1.2p1_1112F.1_g258610 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 4.2e-08 64.3 140 31.4
Oeu004987.4 Olea europaea HOM05D002986 ORTHO05D003966 4.2e-08 64.3 134 31.3
Cpa.g.sc56.116 Carica papaya HOM05D007172 ORTHO05D009267 5.5e-08 63.9 39 71.8
EL10Ac1g01397 Beta vulgaris HOM05D002986 ORTHO05D003966 7.2e-08 63.5 137 32.1
SEGI_32765 Sequoiadendron giganteum HOM05D002737 ORTHO05D009499 7.2e-08 63.5 144 28.5
AL3G20130 Arabidopsis lyrata HOM05D001641 ORTHO05D001667 9.4e-08 63.2 42 66.7
RcHm_v2.0_Chr1g0340691 Rosa chinensis HOM05D002986 ORTHO05D003966 1.2e-07 62.8 140 30.7
Sc09g0006490 Simmondsia chinensis HOM05D002986 ORTHO05D003966 1.2e-07 62.8 137 31.4
Actinidia25367 Actinidia chinensis HOM05D002986 ORTHO05D003966 2.1e-07 62.0 143 30.8
BcaB04g18555 Brassica carinata HOM05D003305 ORTHO05D001298 2.7e-07 61.6 60 48.3
Hma1.2p1_0922F.1_g236940 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 2.7e-07 61.6 140 30.0
Lsat_1_v5_gn_5_104340 Lactuca sativa HOM05D004271 ORTHO05D006011 2.7e-07 61.6 140 27.9
Aqoxy1G03675 Aquilegia oxysepala HOM05D007155 ORTHO05D003034 4.6e-07 60.8 64 43.8
ECA234G2429 Erigeron canadensis HOM05D004271 ORTHO05D006011 4.6e-07 60.8 140 29.3
Rhsim01G0180200 Rhododendron simsii HOM05D004271 ORTHO05D006011 4.6e-07 60.8 137 28.5
SEGI_15100 Sequoiadendron giganteum HOM05D002453 ORTHO05D002107 4.6e-07 60.8 140 24.3
DCAR_001266 Daucus carota HOM05D007155 ORTHO05D003034 6.1e-07 60.5 62 40.3
Hma1.2p1_1427F.1_g282910 Hydrangea macrophylla HOM05D004271 ORTHO05D006011 7.9e-07 60.1 137 29.9
CANSAT35G1083 Cannabis sativa HOM05D002986 ORTHO05D003966 1.0e-06 59.7 133 30.1
ClCG04G008380 Citrullus lanatus HOM05D006895 ORTHO05D008605 1.0e-06 59.7 132 28.0
Dinv32619 Davidia involucrata HOM05D002986 ORTHO05D007611 1.0e-06 59.7 143 30.1
Migut.L00552 Erythranthe guttata HOM05D002986 ORTHO05D006011 1.0e-06 59.7 137 28.5
Migut.N01566 Erythranthe guttata HOM05D002986 ORTHO05D006011 1.0e-06 59.7 137 28.5
Cc05_g05060 Coffea canephora HOM05D002986 ORTHO05D007611 1.4e-06 59.3 134 29.1
Prupe.2G106500 Prunus persica HOM05D002986 ORTHO05D003966 1.4e-06 59.3 137 27.7
TWI59G0009 Tripterygium wilfordii HOM05D002986 ORTHO05D003966 1.4e-06 59.3 137 28.5
TAR624G1337 Trochodendron aralioides HOM05D007155 ORTHO05D003034 1.4e-06 59.3 71 38.0
Aqoxy3G02934 Aquilegia oxysepala HOM05D002986 ORTHO05D003966 1.8e-06 58.9 137 30.7
Lj7C453T5 Lonicera japonica HOM05D002986 ORTHO05D003966 1.8e-06 58.9 143 30.1
GSVIVG01031218001 Vitis vinifera HOM05D002986 ORTHO05D007611 1.8e-06 58.9 143 28.7
Actinidia28087 Actinidia chinensis HOM05D004271 ORTHO05D006011 2.3e-06 58.5 137 27.7
DCAR_022794 Daucus carota HOM05D002986 ORTHO05D003966 2.3e-06 58.5 137 29.2
HanXRQChr10g0294731 Helianthus annuus HOM05D004271 ORTHO05D006011 2.3e-06 58.5 140 27.1
Rhsim01G0224000 Rhododendron simsii HOM05D004271 ORTHO05D006011 2.3e-06 58.5 142 35.2
Cpa.g.c29128.3 Carica papaya HOM05D002986 ORTHO05D003966 3.0e-06 58.2 137 27.7
DCAR_006392 Daucus carota HOM05D002986 ORTHO05D003966 3.0e-06 58.2 137 29.2
MBI04_g11919_MAGBIO Magnolia biondii HOM05D002986 ORTHO05D003966 3.0e-06 58.2 143 31.5
AUR62024804 Chenopodium quinoa HOM05D002986 ORTHO05D003966 3.9e-06 57.8 131 29.0
CiPaw.01G079100 Carya illinoinensis HOM05D002986 ORTHO05D003966 5.1e-06 57.4 137 27.0
Duzib106G0549 Durio zibethinus HOM05D007172 ORTHO05D018188 5.1e-06 57.4 41 58.5
PGR083G0469 Punica granatum HOM05D002986 ORTHO05D003966 5.1e-06 57.4 138 31.9
COL.COLO4_06252 Corchorus olitorius HOM05D003160 ORTHO05D010088 6.7e-06 57.0 137 28.5
Gohir.D12G039800 Gossypium hirsutum HOM05D004271 ORTHO05D006011 6.7e-06 57.0 140 27.1
QL08p046166 Quercus lobata HOM05D002986 ORTHO05D003966 6.7e-06 57.0 152 28.3
Rhsim04G0155500 Rhododendron simsii HOM05D006895 ORTHO05D008605 6.7e-06 57.0 147 29.3
MELO3C003111.2 Cucumis melo HOM05D006895 ORTHO05D008605 8.8e-06 56.6 131 27.5
CsaV3_4G024770 Cucumis sativus L. HOM05D006895 ORTHO05D008605 8.8e-06 56.6 132 27.3
Duzib052G0775 Durio zibethinus HOM05D004271 ORTHO05D006011 8.8e-06 56.6 140 26.4
Gorai.008G041500 Gossypium raimondii HOM05D004271 ORTHO05D006011 8.8e-06 56.6 140 27.1
Hund12398 Selenicereus undatus HOM05D007155 ORTHO05D003034 8.8e-06 56.6 70 37.1


User provided reference genes

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