Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g066710 Medicago truncatula HOM05D005357 ORTHO05D006354 7.4e-253 876.7 435 100.0
Medtr7g056183 Medicago truncatula HOM05D005357 ORTHO05D006354 1.2e-242 842.8 436 96.6
TPR.G1557 Trifolium pratense HOM05D005357 ORTHO05D006354 2.2e-196 689.1 390 87.4
Ca_09168_v3 Cicer arietinum L. HOM05D005357 ORTHO05D006354 4.2e-192 674.9 441 80.0
Glyma.07G144300 Glycine max HOM05D005357 ORTHO05D006354 2.0e-189 666.0 440 77.7
Glyma.18G195500 Glycine max HOM05D005357 ORTHO05D006354 9.8e-189 663.7 443 77.9
Phvul.008G108800 Phaseolus vulgaris HOM05D005357 ORTHO05D006354 7.0e-187 657.5 443 77.7
arahy.Tifrunner.gnm1.ann1.H8VZ0K Arachis hypogaea HOM05D005357 ORTHO05D006354 9.5e-184 647.1 441 76.4
arahy.Tifrunner.gnm1.ann1.5ZZ6F4 Arachis hypogaea HOM05D005357 ORTHO05D006354 4.4e-181 638.3 461 73.5
Lj3g0024478 Lotus japonicus HOM05D005357 ORTHO05D006354 6.0e-178 627.9 443 75.8
Lalb_Chr01g0022881 Lupinus albus HOM05D005357 ORTHO05D006354 1.3e-172 610.1 446 73.3
Lalb_Chr03g0042941 Lupinus albus HOM05D005357 ORTHO05D006354 4.7e-167 591.7 444 70.9
Psat3g131000 Pisum sativum HOM05D005357 ORTHO05D006354 1.1e-160 570.5 354 82.8
QL07p036221 Quercus lobata HOM05D005357 ORTHO05D006354 1.1e-144 517.3 496 58.9
CiPaw.09G205000 Carya illinoinensis HOM05D005357 ORTHO05D006354 1.5e-141 506.9 496 57.5
Cfa017262 Carpinus fangiana HOM05D005357 ORTHO05D006354 2.9e-140 502.7 498 58.2
COL.COLO4_14619 Corchorus olitorius HOM05D005357 ORTHO05D006354 5.6e-136 488.4 488 57.4
CANSAT35G1827 Cannabis sativa HOM05D005357 ORTHO05D006354 9.0e-134 481.1 482 57.5
Thecc.05G023500 Theobroma cacao HOM05D005357 ORTHO05D006354 4.9e-132 475.3 486 56.2
Haze_20938 Corylus avellana HOM05D005357 ORTHO05D006354 3.5e-130 469.2 486 57.8
Duzib093G0024 Durio zibethinus HOM05D005357 ORTHO05D006354 8.7e-129 464.5 486 54.7
TWI77G0073 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 7.4e-128 461.5 498 53.6
Duzib106G1773 Durio zibethinus HOM05D005357 ORTHO05D006354 1.3e-127 460.7 486 54.7
Gohir.D09G158500 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.3e-127 460.7 478 54.4
Gohir.A09G163000 Gossypium hirsutum HOM05D005357 ORTHO05D006354 1.4e-126 457.2 485 55.5
Gorai.006G180200 Gossypium raimondii HOM05D005357 ORTHO05D006354 4.0e-126 455.7 478 55.6
CsaV3_3G034230 Cucumis sativus L. HOM05D005357 ORTHO05D006354 5.8e-125 451.8 470 55.1
Dinv37091 Davidia involucrata HOM05D005357 ORTHO05D006354 3.8e-124 449.1 500 53.8
VMungo1383G1762 Vigna mungo HOM05D005357 ORTHO05D006354 3.8e-124 449.1 323 73.4
Duzib128G1243 Durio zibethinus HOM05D005357 ORTHO05D006354 6.5e-124 448.4 486 52.7
Prupe.6G269500 Prunus persica HOM05D005357 ORTHO05D006354 6.5e-124 448.4 479 56.4
ClCG10G021740 Citrullus lanatus HOM05D005357 ORTHO05D006354 8.4e-124 448.0 489 53.6
RcHm_v2.0_Chr3g0463991 Rosa chinensis HOM05D005357 ORTHO05D006354 3.2e-123 446.0 474 57.8
Manes.08G086900 Manihot esculenta HOM05D005357 ORTHO05D006354 5.5e-123 445.3 490 54.1
MELO3C009198.2 Cucumis melo HOM05D005357 ORTHO05D006354 2.7e-122 443.0 462 55.0
Actinidia13789 Actinidia chinensis HOM05D005357 ORTHO05D006354 7.4e-120 434.9 494 50.8
FvH4_6g12190 Fragaria vesca HOM05D005357 ORTHO05D006354 2.8e-119 433.0 474 56.5
FAN09G0023 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.8e-119 433.0 474 56.5
FAN14G1666 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.8e-119 433.0 474 56.5
FAN14G2781 Fragaria x ananassa HOM05D005357 ORTHO05D006354 2.8e-119 433.0 474 56.5
Potri.006G095600 Populus trichocarpa HOM05D005357 ORTHO05D006354 4.8e-119 432.2 504 52.2
Actinidia29139 Actinidia chinensis HOM05D005357 ORTHO05D006354 1.1e-118 431.0 493 51.3
EL10As5g23477 Beta vulgaris HOM05D005357 ORTHO05D006354 1.4e-118 430.6 450 56.2
Ciclev10011563m.g Citrus clementina HOM05D005357 ORTHO05D006354 1.4e-118 430.6 501 52.5
Nitab4.5_0006254g0010 Nicotiana tabacum HOM05D005357 ORTHO05D006354 3.1e-118 429.5 499 50.9
Sed0007832 Sechium edule HOM05D005357 ORTHO05D006354 6.9e-118 428.3 391 60.4
FAN05G3392 Fragaria x ananassa HOM05D005357 ORTHO05D006354 9.0e-118 427.9 474 56.3
Eucgr.B02762 Eucalyptus grandis HOM05D005357 ORTHO05D006354 1.2e-117 427.6 507 50.9
TAR633G0560 Trochodendron aralioides HOM05D005357 ORTHO05D006354 2.0e-117 426.8 523 50.7
Cpa.g.sc312.3 Carica papaya HOM05D005357 ORTHO05D006354 3.4e-117 426.0 488 53.5
TWI74G0304 Tripterygium wilfordii HOM05D005357 ORTHO05D006354 7.7e-117 424.9 390 61.3
MD12G1159000 Malus domestica HOM05D005357 ORTHO05D006354 1.0e-116 424.5 475 53.7
Peaxi162Scf00141g00133 Petunia axillaris HOM05D005357 ORTHO05D006354 1.0e-116 424.5 498 52.2
Hma1.2p1_0703F.1_g206335 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 1.1e-115 421.0 494 51.8
MD04G1145200 Malus domestica HOM05D005357 ORTHO05D006354 1.4e-115 420.6 471 54.1
FAN02G3235 Fragaria x ananassa HOM05D005357 ORTHO05D006354 3.6e-114 416.0 449 57.0
CAN.G284.13 Capsicum annuum HOM05D005357 ORTHO05D006354 1.5e-112 410.6 495 50.3
Gorai.012G111100 Gossypium raimondii HOM05D005357 ORTHO05D006354 5.7e-112 408.7 382 58.9
Gohir.A04G087700 Gossypium hirsutum HOM05D005357 ORTHO05D006354 7.4e-112 408.3 374 59.6
Ah.11g049570 Amaranthus hybridus HOM05D005357 ORTHO05D006354 9.7e-112 407.9 446 55.4
AUR62024704 Chenopodium quinoa HOM05D005357 ORTHO05D006354 1.5e-109 400.6 442 52.9
TAR636G3085 Trochodendron aralioides HOM05D005357 ORTHO05D006354 3.4e-109 399.4 419 55.4
AUR62011861 Chenopodium quinoa HOM05D005357 ORTHO05D006354 5.9e-109 398.7 385 58.4
Nitab4.5_0000008g0560 Nicotiana tabacum HOM05D005357 ORTHO05D006354 7.7e-109 398.3 498 48.6
Nn1g02852 Nelumbo nucifera HOM05D005357 ORTHO05D006354 1.7e-108 397.1 516 50.2
PGR031G1436 Punica granatum HOM05D005357 ORTHO05D006354 6.1e-106 388.7 512 47.7
Lj2A78G31 Lonicera japonica HOM05D005357 ORTHO05D006354 1.1e-104 384.4 468 51.9
MBI06_g17209_MAGBIO Magnolia biondii HOM05D005357 ORTHO05D006354 1.1e-104 384.4 511 49.1
SalBow3G4061 Salvia bowleyana HOM05D005357 ORTHO05D006354 3.7e-103 379.4 482 50.0
GSVIVG01034021001 Vitis vinifera HOM05D005357 ORTHO05D006354 1.8e-102 377.1 393 53.7
Cc06_g01760 Coffea canephora HOM05D005357 ORTHO05D006354 3.1e-102 376.3 501 47.5
Gohir.D04G128100 Gossypium hirsutum HOM05D005357 ORTHO05D006354 2.0e-101 373.6 382 55.8
vmacro01296 Vaccinium macrocarpon HOM05D005357 ORTHO05D006354 6.5e-100 368.6 478 49.2
PGSC0003DMG402020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 8.5e-100 368.2 456 49.6
Migut.J00234 Erythranthe guttata HOM05D005357 ORTHO05D006354 1.5e-99 367.5 469 50.7
THA.LOC104827038 Tarenaya hassleriana HOM05D005357 ORTHO05D006354 9.4e-99 364.8 424 50.2
Sopen09g006960 Solanum pennellii HOM05D005357 ORTHO05D006354 1.8e-97 360.5 451 49.0
MSTRG.5603 Avicennia marina HOM05D005357 ORTHO05D006354 4.4e-96 355.9 489 47.9
Hund09607 Selenicereus undatus HOM05D005357 ORTHO05D006354 1.3e-95 354.4 432 50.5
Sabra06G0073400 Salix brachista HOM05D005357 ORTHO05D006354 1.4e-94 350.9 593 42.2
Aa31LG1G22800 Aethionema arabicum HOM05D005357 ORTHO05D006354 3.5e-93 346.3 441 48.1
Hund02920 Selenicereus undatus HOM05D005357 ORTHO05D006354 3.5e-93 346.3 443 49.7
PSO384G3148 Papaver somniferum HOM05D005357 ORTHO05D006354 1.0e-89 334.7 478 44.6
PSO585G0030 Papaver somniferum HOM05D005357 ORTHO05D006354 2.0e-88 330.5 451 46.8
HPP92_021066 Vanilla planifolia HOM05D005357 ORTHO05D006354 2.0e-88 330.5 392 50.5
Aqoxy1G00739 Aquilegia oxysepala HOM05D005357 ORTHO05D006354 3.4e-88 329.7 398 53.5
Carub.0006s0073 Capsella rubella HOM05D005357 ORTHO05D006354 7.0e-86 322.0 372 50.8
DCAR_005589 Daucus carota HOM05D005357 ORTHO05D006354 7.0e-86 322.0 497 43.7
SGA_v2.0_scaffold85G26772 Striga asiatica HOM05D005357 ORTHO05D006354 1.6e-85 320.9 447 47.0
Sp6g40520 Schrenkiella parvula HOM05D005357 ORTHO05D006354 1.7e-84 317.4 441 44.9
Sc05g0000650 Simmondsia chinensis HOM05D005357 ORTHO05D006354 2.2e-84 317.0 315 58.4
AL6G11040 Arabidopsis lyrata HOM05D005357 ORTHO05D006354 8.5e-84 315.1 445 44.7
A10p33610 Brassica napus HOM05D005357 ORTHO05D006354 7.2e-83 312.0 446 44.4
CARHR211480 Cardamine hirsuta HOM05D005357 ORTHO05D006354 1.4e-81 307.8 373 50.4
Thhalv10014073m.g Eutrema salsugineum HOM05D005357 ORTHO05D006354 4.0e-81 306.2 371 50.1
AT5G01160 Arabidopsis thaliana HOM05D005357 ORTHO05D006354 4.9e-79 299.3 374 48.4
BcaNung02762 Brassica carinata HOM05D005357 ORTHO05D006354 1.1e-78 298.1 445 44.7
BcaB05g21942 Brassica carinata HOM05D005357 ORTHO05D006354 1.8e-78 297.4 394 48.0
Oeu044369.1 Olea europaea HOM05D005357 ORTHO05D006354 3.1e-78 296.6 478 40.4
SGA_v2.0_scaffold75G24995 Striga asiatica HOM05D005357 ORTHO05D006354 3.1e-78 296.6 355 51.0
BraA10t45393Z Brassica rapa HOM05D005357 ORTHO05D006354 5.4e-78 295.8 443 42.4
Oeu030537.4 Olea europaea HOM05D005357 ORTHO05D006354 2.7e-77 293.5 452 43.4
CDE04G3126 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 1.3e-76 291.2 385 44.9
BolC9t60186H Brassica oleracea HOM05D005357 ORTHO05D006354 4.7e-74 282.7 396 46.2
Dinv03649 Davidia involucrata HOM05D005357 ORTHO05D006354 4.7e-74 282.7 400 46.8
C09p74540 Brassica napus HOM05D005357 ORTHO05D006354 6.1e-74 282.3 396 46.2
HanXRQChr13g0406371 Helianthus annuus HOM05D005357 ORTHO05D006354 4.4e-72 276.2 437 43.2
CDE03G0086 Ceratophyllum demersum HOM05D005357 ORTHO05D006354 4.1e-70 269.6 400 43.2
Os10g0494500 Oryza sativa ssp. japonica HOM05D005357 ORTHO05D006354 1.0e-68 265.0 379 45.6
ECA248G2096 Erigeron canadensis HOM05D005357 ORTHO05D006354 1.1e-67 261.5 446 43.3
Lsat_1_v5_gn_5_155380 Lactuca sativa HOM05D005357 ORTHO05D006354 1.1e-67 261.5 437 43.2
Glyma.18G195800 Glycine max HOM05D005357 ORTHO05D006354 7.3e-67 258.8 210 68.6
unitig_22.g6590 Utricularia gibba HOM05D005357 ORTHO05D006354 1.6e-66 257.7 478 40.4
Atru.chr8.2135 Acer truncatum HOM05D005357 ORTHO05D006354 2.8e-66 256.9 383 46.7
BcaNung02766 Brassica carinata HOM05D005357 ORTHO05D006354 8.0e-66 255.4 398 42.0
Zm00001eb044800 Zea mays HOM05D005357 ORTHO05D006354 1.5e-64 251.1 431 42.7
CSS0020158 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 2.3e-60 237.3 385 42.9
HanXRQChr13g0397571 Helianthus annuus HOM05D005357 ORTHO05D006354 4.3e-59 233.0 354 42.4
Zm00001eb221140 Zea mays HOM05D005357 ORTHO05D006354 1.2e-58 231.5 254 52.0
HanXRQChr13g0397921 Helianthus annuus HOM05D005357 ORTHO05D006354 1.6e-58 231.1 234 51.7
SHI12776 Sapria himalayana HOM05D005357 ORTHO05D006354 1.3e-55 221.5 262 52.7
PGSC0003DMG400002411 Solanum tuberosum HOM05D005357 ORTHO05D006354 1.1e-54 218.4 383 41.0
Solyc09g013120.4 Solanum lycopersicum HOM05D005357 ORTHO05D006354 1.0e-52 211.8 348 44.3
SEGI_31043 Sequoiadendron giganteum HOM05D005357 ORTHO05D006354 6.6e-52 209.1 171 56.1
DCAR_008325 Daucus carota HOM05D005357 ORTHO05D006354 5.4e-46 189.5 185 51.4
Atru.chr8.2134 Acer truncatum HOM05D005357 ORTHO05D006354 3.6e-42 176.8 108 79.6
Mapoly0068s0057 Marchantia polymorpha HOM05D005357 ORTHO05D006354 4.3e-35 153.3 160 48.1
Hma1.2p1_0125F.1_g058510 Hydrangea macrophylla HOM05D005357 ORTHO05D006354 8.1e-34 149.1 344 34.0
ATR0605G041 Amborella trichopoda HOM05D005357 ORTHO05D006354 1.8e-33 147.9 365 34.8
Pp3c20_10060 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.6e-32 144.1 277 36.8
Pp3c23_4130 Physcomitrium patens HOM05D005357 ORTHO05D006354 7.6e-32 142.5 227 37.0
SEGI_08495 Sequoiadendron giganteum HOM05D054687 ORTHO05D006354 9.3e-30 135.6 94 68.1
Pp3c8_18230 Physcomitrium patens HOM05D005357 ORTHO05D006354 2.3e-28 131.0 287 33.4
CBR_g24154 Chara braunii HOM05D005357 ORTHO05D006354 9.9e-24 115.5 111 45.0
PGSC0003DMG401020324 Solanum tuberosum HOM05D005357 ORTHO05D006354 3.8e-23 113.6 85 64.7
CSS0030830 Camellia sinensis var. sinensis HOM05D005357 ORTHO05D006354 3.0e-20 104.0 68 75.0
Oeu055280.1 Olea europaea HOM05D005357 ORTHO05D006354 1.9e-19 101.3 205 34.6
Rhsim01G0256700 Rhododendron simsii HOM05D005357 ORTHO05D004574 5.7e-11 73.2 150 34.0
RcHm_v2.0_Chr3g0492291 Rosa chinensis HOM05D005357 ORTHO05D006354 1.3e-07 62.0 52 65.4


User provided reference genes

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