Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g065130 Medicago truncatula HOM05D006892 ORTHO05D008592 1.8e-40 168.7 80 100.0
Psat3g133520 Pisum sativum HOM05D006892 ORTHO05D008592 5.0e-30 134.0 76 82.9
TPR.G34921 Trifolium pratense HOM05D006892 ORTHO05D008592 2.1e-28 128.6 81 79.0
Lj1g0020029 Lotus japonicus HOM05D006892 ORTHO05D008592 6.1e-28 127.1 80 73.8
Lalb_Chr19g0125031 Lupinus albus HOM05D006892 ORTHO05D008592 7.9e-28 126.7 80 73.8
Glyma.07G139200 Glycine max HOM05D006892 ORTHO05D008592 1.8e-27 125.6 80 71.2
Glyma.04G105400 Glycine max HOM05D006892 ORTHO05D008592 5.1e-27 124.0 79 70.9
Glyma.18G189800 Glycine max HOM05D006892 ORTHO05D008592 2.0e-26 122.1 76 73.7
Lalb_Chr03g0042701 Lupinus albus HOM05D006892 ORTHO05D008592 2.8e-25 118.2 80 68.8
Glyma.01G105400 Glycine max HOM05D006892 ORTHO05D008592 1.8e-24 115.5 78 67.9
Glyma.03G073200 Glycine max HOM05D006892 ORTHO05D008592 4.1e-24 114.4 79 68.4
Lj3g0005144 Lotus japonicus HOM05D006892 ORTHO05D008592 2.0e-23 112.1 77 63.6
Phvul.008G114100 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 7.7e-23 110.2 80 71.2
arahy.Tifrunner.gnm1.ann1.AC77RP Arachis hypogaea HOM05D006892 ORTHO05D008592 2.9e-22 108.2 79 67.1
arahy.Tifrunner.gnm1.ann1.71B432 Arachis hypogaea HOM05D006892 ORTHO05D008592 3.8e-22 107.8 79 67.1
Phvul.010G009200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 1.4e-21 105.9 80 60.0
Medtr4g019640 Medicago truncatula HOM05D006892 ORTHO05D008592 6.1e-20 100.5 74 60.8
Psat7g241320 Pisum sativum HOM05D006892 ORTHO05D008592 1.4e-19 99.4 80 58.8
Atru.chr8.2090 Acer truncatum HOM05D006892 ORTHO05D008592 2.0e-18 95.5 80 57.5
Prupe.6G264500 Prunus persica HOM05D006892 ORTHO05D008592 2.0e-18 95.5 76 55.3
RcHm_v2.0_Chr3g0464651 Rosa chinensis HOM05D006892 ORTHO05D008592 5.7e-18 94.0 79 51.9
arahy.Tifrunner.gnm1.ann1.KB6CC9 Arachis hypogaea HOM05D006892 ORTHO05D008592 7.4e-18 93.6 57 71.9
arahy.Tifrunner.gnm1.ann1.KX701I Arachis hypogaea HOM05D006892 ORTHO05D008592 7.4e-18 93.6 57 71.9
MD12G1154700 Malus domestica HOM05D006892 ORTHO05D008592 7.4e-18 93.6 72 59.7
Thecc.05G029200 Theobroma cacao HOM05D006892 ORTHO05D008592 1.7e-17 92.4 75 60.0
FAN14G5964 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.7e-17 91.3 79 49.4
FAN05G3252 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-16 89.7 69 53.6
FAN09G3730 Fragaria x ananassa HOM05D006892 ORTHO05D008592 1.1e-16 89.7 69 53.6
TAR636G2473 Trochodendron aralioides HOM05D006892 ORTHO05D008592 1.4e-16 89.4 80 50.0
Haze_20883 Corylus avellana HOM05D006892 ORTHO05D008592 1.8e-16 89.0 75 56.0
Haze_20892 Corylus avellana HOM05D006892 ORTHO05D008592 1.8e-16 89.0 75 56.0
FvH4_6g12730 Fragaria vesca HOM05D006892 ORTHO05D008592 1.8e-16 89.0 79 48.1
COL.COLO4_14695 Corchorus olitorius HOM05D006892 ORTHO05D008592 3.1e-16 88.2 77 59.7
FAN02G3144 Fragaria x ananassa HOM05D006892 ORTHO05D008592 3.1e-16 88.2 79 46.8
Gohir.A09G152400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 3.1e-16 88.2 75 58.7
TPR.G32561 Trifolium pratense HOM05D006892 ORTHO05D008592 3.1e-16 88.2 81 53.1
Dinv37115 Davidia involucrata HOM05D006892 ORTHO05D008592 4.1e-16 87.8 75 53.3
Gohir.D09G148100 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.1e-16 87.8 75 57.3
Gorai.006G169100 Gossypium raimondii HOM05D006892 ORTHO05D008592 4.1e-16 87.8 75 57.3
Gohir.D04G125400 Gossypium hirsutum HOM05D006892 ORTHO05D008592 9.1e-16 86.7 80 57.5
Gorai.012G108500 Gossypium raimondii HOM05D006892 ORTHO05D008592 9.1e-16 86.7 80 57.5
TAR623G0452 Trochodendron aralioides HOM05D006892 ORTHO05D008592 2.0e-15 85.5 77 51.9
MD04G1138900 Malus domestica HOM05D006892 ORTHO05D008592 7.7e-15 83.6 70 57.1
MBI14_g02866_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 2.2e-14 82.0 74 47.3
CiPaw.09G201300 Carya illinoinensis HOM05D006892 ORTHO05D008592 3.8e-14 81.3 80 52.5
Hma1.2p1_0039F.1_g024865 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.8e-14 81.3 69 52.2
Hma1.2p1_0039F.1_g024870 Hydrangea macrophylla HOM05D006892 ORTHO05D008592 3.8e-14 81.3 69 52.2
Manes.09G098400 Manihot esculenta HOM05D006892 ORTHO05D008592 6.5e-14 80.5 76 53.9
Potri.006G092300 Populus trichocarpa HOM05D006892 ORTHO05D008592 6.5e-14 80.5 61 63.9
TAR633G0729 Trochodendron aralioides HOM05D006892 ORTHO05D008592 6.5e-14 80.5 77 49.4
Gohir.A04G085600 Gossypium hirsutum HOM05D006892 ORTHO05D008592 8.5e-14 80.1 75 57.3
Ciclev10013234m.g Citrus clementina HOM05D006892 ORTHO05D008592 1.1e-13 79.7 80 52.5
MBI14_g02865_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 1.9e-13 79.0 74 44.6
GSVIVG01016437001 Vitis vinifera HOM05D006892 ORTHO05D008592 1.9e-13 79.0 80 50.0
Manes.08G082100 Manihot esculenta HOM05D006892 ORTHO05D008592 2.5e-13 78.6 78 48.7
Potri.010G196500 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.2e-13 77.8 72 52.8
Potri.016G103900 Populus trichocarpa HOM05D006892 ORTHO05D008592 4.2e-13 77.8 56 62.5
Cpa.g.sc56.60 Carica papaya HOM05D006892 ORTHO05D008592 5.5e-13 77.4 76 50.0
HanXRQChr05g0156901 Helianthus annuus HOM05D006892 ORTHO05D008592 5.5e-13 77.4 81 45.7
Dinv34454 Davidia involucrata HOM05D006892 ORTHO05D008592 9.4e-13 76.6 78 42.3
Sabra08G0045200 Salix brachista HOM05D006892 ORTHO05D008592 9.4e-13 76.6 80 47.5
CSS0014654 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 1.6e-12 75.9 77 46.8
CiPaw.10G149300 Carya illinoinensis HOM05D006892 ORTHO05D008592 1.6e-12 75.9 79 49.4
Phvul.001G238200 Phaseolus vulgaris HOM05D006892 ORTHO05D008592 2.7e-12 75.1 76 47.4
Rhsim05G0199800 Rhododendron simsii HOM05D006892 ORTHO05D008592 2.7e-12 75.1 75 50.7
MBI05_g02667_MAGBIO Magnolia biondii HOM05D006892 ORTHO05D008592 4.7e-12 74.3 74 43.2
Ciclev10033223m.g Citrus clementina HOM05D006892 ORTHO05D008592 6.1e-12 73.9 79 45.6
Haze_17148 Corylus avellana HOM05D000015 ORTHO05D000270 6.1e-12 73.9 67 49.3
Haze_17150 Corylus avellana HOM05D006892 ORTHO05D008592 8.0e-12 73.6 71 53.5
Haze_18710 Corylus avellana HOM05D006892 ORTHO05D008592 8.0e-12 73.6 79 44.3
Sabra06G0070000 Salix brachista HOM05D006892 ORTHO05D008592 8.0e-12 73.6 77 48.1
Sabra10G0151100 Salix brachista HOM05D006892 ORTHO05D008592 1.0e-11 73.2 70 50.0
Actinidia13165 Actinidia chinensis HOM05D006892 ORTHO05D008592 5.2e-11 70.9 76 46.1
Glyma.18G033400 Glycine max HOM05D006892 ORTHO05D008592 5.2e-11 70.9 79 49.4
PGSC0003DMG400024270 Solanum tuberosum HOM05D006892 ORTHO05D008592 5.2e-11 70.9 74 48.6
MBI14_g02869_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 6.7e-11 70.5 44 56.8
Medtr3g069540 Medicago truncatula HOM05D006892 ORTHO05D008592 6.7e-11 70.5 76 47.4
GSVIVG01034067001 Vitis vinifera HOM05D006892 ORTHO05D008592 8.8e-11 70.1 66 53.0
ClCG04G007580 Citrullus lanatus HOM05D006892 ORTHO05D008592 1.5e-10 69.3 68 48.5
CSS0009632 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.0e-10 68.9 75 48.0
CiPaw.01G293100 Carya illinoinensis HOM05D006892 ORTHO05D008592 2.0e-10 68.9 68 45.6
Lsat_1_v5_gn_9_32981 Lactuca sativa HOM05D006892 ORTHO05D008592 2.0e-10 68.9 73 43.8
Nn2g13528 Nelumbo nucifera HOM05D006892 ORTHO05D008592 2.0e-10 68.9 82 40.2
Potri.008G061600 Populus trichocarpa HOM05D006892 ORTHO05D008592 2.0e-10 68.9 108 35.2
CSS0005500 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 2.6e-10 68.6 76 46.1
Cfa001402 Carpinus fangiana HOM05D006892 ORTHO05D008592 2.6e-10 68.6 72 43.1
Cc06_g02080 Coffea canephora HOM05D006892 ORTHO05D008592 2.6e-10 68.6 81 49.4
Manes.10G021300 Manihot esculenta HOM05D006892 ORTHO05D008592 2.6e-10 68.6 74 45.9
MELO3C033485.2 Cucumis melo HOM05D006892 ORTHO05D008592 3.3e-10 68.2 69 46.4
Sed0015200 Sechium edule HOM05D006892 ORTHO05D008592 3.3e-10 68.2 74 47.3
CSS0011916 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.4e-10 67.8 82 45.1
CSS0020330 Camellia sinensis var. sinensis HOM05D006892 ORTHO05D008592 4.4e-10 67.8 75 46.7
Atru.chr12.266 Acer truncatum HOM05D006892 ORTHO05D008592 7.5e-10 67.0 75 48.0
DCAR_028810 Daucus carota HOM05D006892 ORTHO05D008592 1.7e-09 65.9 47 51.1
Actinidia02903 Actinidia chinensis HOM05D006892 ORTHO05D008592 4.8e-09 64.3 78 41.0
Sopen09g006180 Solanum pennellii HOM05D006892 ORTHO05D008592 4.8e-09 64.3 80 47.5
COL.COLO4_36543 Corchorus olitorius HOM05D006892 ORTHO05D008592 6.3e-09 63.9 65 46.2
Lj6g0007525 Lotus japonicus HOM05D006892 ORTHO05D008592 6.3e-09 63.9 74 41.9
Thecc.10G031400 Theobroma cacao HOM05D006892 ORTHO05D008592 6.3e-09 63.9 75 44.0
CDE02G2266 Ceratophyllum demersum HOM05D006892 ORTHO05D008592 8.2e-09 63.5 74 44.6
Eucgr.G02995 Eucalyptus grandis HOM05D006892 ORTHO05D008592 8.2e-09 63.5 70 42.9
TPR.G33720 Trifolium pratense HOM05D006892 ORTHO05D008592 8.2e-09 63.5 77 45.5
Manes.07G122400 Manihot esculenta HOM05D006892 ORTHO05D008592 1.1e-08 63.2 75 42.7
CAN.G697.1 Capsicum annuum HOM05D006892 ORTHO05D008592 1.4e-08 62.8 59 50.8
Gorai.011G273300 Gossypium raimondii HOM05D006892 ORTHO05D008592 1.8e-08 62.4 75 45.3
Gohir.A10G225300 Gossypium hirsutum HOM05D006892 ORTHO05D008592 4.1e-08 61.2 71 45.1
arahy.Tifrunner.gnm1.ann1.F5D7CA Arachis hypogaea HOM05D006892 ORTHO05D008592 7.0e-08 60.5 75 42.7
TAR633G0009 Trochodendron aralioides HOM05D006892 ORTHO05D414936 9.1e-08 60.1 76 39.5
Eucgr.G02997 Eucalyptus grandis HOM05D006892 ORTHO05D008592 2.7e-07 58.5 70 40.0
Gohir.D10G238364 Gossypium hirsutum HOM05D006892 ORTHO05D008592 2.7e-07 58.5 71 43.7
Cpa.g.sc19.256 Carica papaya HOM05D006892 ORTHO05D008592 3.5e-07 58.2 75 44.0
Sc07g0007010 Simmondsia chinensis HOM05D006892 ORTHO05D008592 3.5e-07 58.2 83 41.0
arahy.Tifrunner.gnm1.ann1.J5YN7E Arachis hypogaea HOM05D006892 ORTHO05D008592 1.3e-06 56.2 79 40.5
Medtr4g029470 Medicago truncatula HOM05D006892 ORTHO05D259580 1.3e-06 56.2 34 76.5
Sopen03g027280 Solanum pennellii HOM05D006892 ORTHO05D008592 1.3e-06 56.2 41 51.2
HPP92_019858 Vanilla planifolia HOM05D006892 ORTHO05D008592 1.7e-06 55.8 67 37.3
Sopen09g006190 Solanum pennellii HOM05D006892 ORTHO05D008592 2.2e-06 55.5 67 44.8
HanXRQChr08g0221291 Helianthus annuus HOM05D006892 ORTHO05D008592 5.0e-06 54.3 85 35.3


User provided reference genes

Program Settings