Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g060740 Medicago truncatula HOM05D003330 ORTHO05D003805 1.2e-61 239.6 119 100.0
Psat3g149760 Pisum sativum HOM05D003330 ORTHO05D003805 9.3e-41 170.2 127 70.9
TPR.G29158 Trifolium pratense HOM05D003330 ORTHO05D003805 9.3e-41 170.2 127 70.9
Medtr7g055700 Medicago truncatula HOM05D003330 ORTHO05D003805 1.2e-40 169.9 127 69.3
Ca_07508_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 1.1e-36 156.8 127 65.4
Glyma.18G158900 Glycine max HOM05D003330 ORTHO05D003805 2.6e-35 152.1 130 64.6
Glyma.08G347400 Glycine max HOM05D003330 ORTHO05D003805 3.4e-35 151.8 130 64.6
Phvul.008G132600 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 5.8e-35 151.0 130 63.8
VMungo1383G0348 Vigna mungo HOM05D003330 ORTHO05D003805 1.9e-33 146.0 130 60.8
Lj1g0012576 Lotus japonicus HOM05D003330 ORTHO05D003805 7.9e-32 140.6 128 58.6
Lalb_Chr03g0041371 Lupinus albus HOM05D003330 ORTHO05D003805 2.3e-31 139.0 130 58.5
MD10G1157600 Malus domestica HOM05D003330 ORTHO05D003805 3.9e-31 138.3 130 56.2
Lalb_Chr19g0125901 Lupinus albus HOM05D003330 ORTHO05D003805 1.1e-30 136.7 129 55.8
Ca_23216_v3 Cicer arietinum L. HOM05D003330 ORTHO05D003805 2.8e-29 132.1 130 56.2
MD05G1169300 Malus domestica HOM05D003330 ORTHO05D003805 6.2e-29 131.0 130 54.6
TPR.G31568 Trifolium pratense HOM05D003330 ORTHO05D003805 6.2e-29 131.0 130 56.2
Prupe.8G196500 Prunus persica HOM05D003330 ORTHO05D003805 5.3e-28 127.9 130 53.8
RcHm_v2.0_Chr6g0283751 Rosa chinensis HOM05D003330 ORTHO05D003805 6.9e-28 127.5 130 56.2
Thecc.01G216800 Theobroma cacao HOM05D003330 ORTHO05D003805 1.2e-27 126.7 131 51.1
Glyma.16G089300 Glycine max HOM05D003330 ORTHO05D003805 1.5e-27 126.3 130 54.6
Medtr8g012570 Medicago truncatula HOM05D003330 ORTHO05D003805 1.5e-27 126.3 127 53.5
arahy.Tifrunner.gnm1.ann1.T9C3HB Arachis hypogaea HOM05D003330 ORTHO05D003805 5.8e-27 124.4 130 51.5
Psat4g204360 Pisum sativum HOM05D003330 ORTHO05D003805 5.8e-27 124.4 130 53.1
arahy.Tifrunner.gnm1.ann1.K4VXRT Arachis hypogaea HOM05D003330 ORTHO05D003805 7.6e-27 124.0 130 51.5
CANSAT01G2062 Cannabis sativa HOM05D003330 ORTHO05D003805 1.3e-26 123.2 127 53.5
Cfa010402 Carpinus fangiana HOM05D003330 ORTHO05D003805 1.3e-26 123.2 131 51.9
Lj3g0017252 Lotus japonicus HOM05D003330 ORTHO05D003805 1.3e-26 123.2 132 54.5
CSS0043597 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 6.5e-26 120.9 127 52.8
QL09p049903 Quercus lobata HOM05D003330 ORTHO05D003805 6.5e-26 120.9 131 51.9
Cpa.g.sc8.124 Carica papaya HOM05D003330 ORTHO05D003805 8.4e-26 120.6 133 54.1
Haze_03351 Corylus avellana HOM05D003330 ORTHO05D003805 8.4e-26 120.6 130 51.5
Duzib211G0662 Durio zibethinus HOM05D003330 ORTHO05D003805 8.4e-26 120.6 130 50.8
Duzib138G0157 Durio zibethinus HOM05D003330 ORTHO05D003805 1.1e-25 120.2 131 50.4
VMungo0331G0963 Vigna mungo HOM05D003330 ORTHO05D003805 1.4e-25 119.8 130 50.8
CiPaw.14G040100 Carya illinoinensis HOM05D003330 ORTHO05D003805 1.9e-25 119.4 131 51.9
TWI36G0434 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 1.9e-25 119.4 130 48.5
TWI75G0253 Tripterygium wilfordii HOM05D003330 ORTHO05D003805 2.5e-25 119.0 130 47.7
Actinidia09460 Actinidia chinensis HOM05D003330 ORTHO05D003805 4.2e-25 118.2 127 52.0
Rhsim13G0049900 Rhododendron simsii HOM05D003330 ORTHO05D003805 4.2e-25 118.2 127 50.4
FAN27G2838 Fragaria x ananassa HOM05D003330 ORTHO05D003805 7.2e-25 117.5 130 51.5
FAN15G2534 Fragaria x ananassa HOM05D003330 ORTHO05D003805 1.2e-24 116.7 130 51.5
CiPaw.13G050400 Carya illinoinensis HOM05D003330 ORTHO05D003805 1.6e-24 116.3 131 50.4
COL.COLO4_16110 Corchorus olitorius HOM05D003330 ORTHO05D003805 1.6e-24 116.3 129 49.6
Manes.12G049200 Manihot esculenta HOM05D003330 ORTHO05D003805 1.6e-24 116.3 129 51.2
vmacro02791 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 1.6e-24 116.3 127 50.4
Dinv19152 Davidia involucrata HOM05D003330 ORTHO05D003805 2.1e-24 115.9 127 52.0
Hma1.2p1_0226F.1_g095240 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 2.1e-24 115.9 132 49.2
VMungo0331G0017 Vigna mungo HOM05D003330 ORTHO05D003805 2.1e-24 115.9 125 52.0
Ciclev10020030m.g Citrus clementina HOM05D003330 ORTHO05D003805 2.7e-24 115.5 130 49.2
Dinv28843 Davidia involucrata HOM05D003330 ORTHO05D003805 2.7e-24 115.5 127 52.0
FAN24G2302 Fragaria x ananassa HOM05D003330 ORTHO05D003805 6.1e-24 114.4 130 50.0
FvH4_2g18370 Fragaria vesca HOM05D003330 ORTHO05D003805 1.3e-23 113.2 130 50.0
Actinidia23391 Actinidia chinensis HOM05D003330 ORTHO05D003805 1.8e-23 112.8 127 49.6
Potri.014G195000 Populus trichocarpa HOM05D003330 ORTHO05D003805 3.0e-23 112.1 127 48.8
CSS0049579 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 3.9e-23 111.7 134 48.5
Gohir.A07G198600 Gossypium hirsutum HOM05D003330 ORTHO05D003805 3.9e-23 111.7 130 46.2
Potri.002G247100 Populus trichocarpa HOM05D003330 ORTHO05D003805 3.9e-23 111.7 127 50.4
Dinv14525 Davidia involucrata HOM05D003330 ORTHO05D003805 5.1e-23 111.3 128 49.2
Rhsim01G0251100 Rhododendron simsii HOM05D003330 ORTHO05D003805 5.1e-23 111.3 127 48.0
vmacro14723 Vaccinium macrocarpon HOM05D003330 ORTHO05D003805 8.7e-23 110.5 127 48.0
CSS0011751 Camellia sinensis var. sinensis HOM05D003330 ORTHO05D003805 1.1e-22 110.2 134 48.5
Gohir.A11G140200 Gossypium hirsutum HOM05D003330 ORTHO05D003805 2.5e-22 109.0 130 45.4
Gohir.D07G205000 Gossypium hirsutum HOM05D003330 ORTHO05D003805 4.3e-22 108.2 130 45.4
Gorai.001G231000 Gossypium raimondii HOM05D003330 ORTHO05D003805 4.3e-22 108.2 130 45.4
Nitab4.5_0002671g0010 Nicotiana tabacum HOM05D003330 ORTHO05D003805 4.3e-22 108.2 127 48.8
Cc01_g16540 Coffea canephora HOM05D003330 ORTHO05D003805 9.7e-22 107.1 133 47.4
Sed0021953 Sechium edule HOM05D003330 ORTHO05D003805 1.3e-21 106.7 130 46.2
Glyma.03G085500 Glycine max HOM05D003330 ORTHO05D003805 2.2e-21 105.9 123 47.2
Peaxi162Scf00487g00619 Petunia axillaris HOM05D003330 ORTHO05D003805 2.8e-21 105.5 127 48.8
Sed0013413 Sechium edule HOM05D003330 ORTHO05D003805 2.8e-21 105.5 130 45.4
Nitab4.5_0003020g0100 Nicotiana tabacum HOM05D003330 ORTHO05D003805 4.8e-21 104.8 127 48.0
Peaxi162Scf01312g00058 Petunia axillaris HOM05D003330 ORTHO05D003805 4.8e-21 104.8 127 48.0
Hund05586 Selenicereus undatus HOM05D003330 ORTHO05D003805 4.8e-21 104.8 131 43.5
Peaxi162Scf01312g00009 Petunia axillaris HOM05D003330 ORTHO05D003805 8.2e-21 104.0 132 47.7
Phvul.010G022900 Phaseolus vulgaris HOM05D003330 ORTHO05D003805 8.2e-21 104.0 133 45.9
Glyma.03G085100 Glycine max HOM05D003330 ORTHO05D003805 1.4e-20 103.2 128 49.2
Nitab4.5_0000403g0090 Nicotiana tabacum HOM05D003330 ORTHO05D003805 1.8e-20 102.8 127 46.5
Sabra02G0188100 Salix brachista HOM05D003330 ORTHO05D003805 5.3e-20 101.3 127 45.7
Sopen06g034620 Solanum pennellii HOM05D003330 ORTHO05D003805 6.9e-20 100.9 127 47.2
THA.LOC104822486 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 9.0e-20 100.5 129 43.4
Actinidia30042 Actinidia chinensis HOM05D003330 ORTHO05D003805 2.0e-19 99.4 127 46.5
Solyc06g083230.3 Solanum lycopersicum HOM05D003330 ORTHO05D003805 2.0e-19 99.4 127 46.5
Atru.chr1.3019 Acer truncatum HOM05D003330 ORTHO05D003805 7.7e-19 97.4 128 41.4
Medtr8g016030 Medicago truncatula HOM05D003330 ORTHO05D003805 7.7e-19 97.4 116 50.0
Hma1.2p1_0149F.1_g066530 Hydrangea macrophylla HOM05D003330 ORTHO05D003805 1.3e-18 96.7 127 41.7
HanXRQChr01g0015341 Helianthus annuus HOM05D003330 ORTHO05D003805 1.7e-18 96.3 127 43.3
Atru.chr6.1444 Acer truncatum HOM05D003330 ORTHO05D003805 2.9e-18 95.5 128 40.6
EL10Ac6g13228 Beta vulgaris HOM05D003330 ORTHO05D003805 2.9e-18 95.5 132 40.9
AUR62001147 Chenopodium quinoa HOM05D003330 ORTHO05D003805 2.9e-18 95.5 132 42.4
PGSC0003DMG400020105 Solanum tuberosum HOM05D003330 ORTHO05D003805 2.9e-18 95.5 127 46.5
CsaV3_1G041250 Cucumis sativus L. HOM05D003330 ORTHO05D003805 5.0e-18 94.7 134 45.5
ECA248G3375 Erigeron canadensis HOM05D003330 ORTHO05D003805 5.0e-18 94.7 125 40.8
THA.LOC104818979 Tarenaya hassleriana HOM05D003330 ORTHO05D003805 5.0e-18 94.7 129 41.9
AUR62016529 Chenopodium quinoa HOM05D003330 ORTHO05D003805 6.5e-18 94.4 132 43.2
CARHR081920 Cardamine hirsuta HOM05D003330 ORTHO05D003805 8.5e-18 94.0 130 42.3
SalBow3G1870 Salvia bowleyana HOM05D003330 ORTHO05D003805 8.5e-18 94.0 124 39.5
Lj2C1122T12 Lonicera japonica HOM05D003330 ORTHO05D003805 1.4e-17 93.2 127 43.3
Sc17g0002010 Simmondsia chinensis HOM05D003330 ORTHO05D003805 1.9e-17 92.8 128 47.7
Ah.08g214460 Amaranthus hybridus HOM05D003330 ORTHO05D003805 5.5e-17 91.3 130 40.0
MELO3C021071.2 Cucumis melo HOM05D003330 ORTHO05D003805 5.5e-17 91.3 131 42.7
MSTRG.18828 Avicennia marina HOM05D003330 ORTHO05D003805 1.6e-16 89.7 124 39.5
ClCG09G008720 Citrullus lanatus HOM05D003330 ORTHO05D003805 2.1e-16 89.4 134 43.3
CsaV3_7G026240 Cucumis sativus L. HOM05D003330 ORTHO05D003805 2.1e-16 89.4 131 42.0
EL10Ac4g09084 Beta vulgaris HOM05D003330 ORTHO05D003805 3.6e-16 88.6 130 43.1
Oeu023105.2 Olea europaea HOM05D003330 ORTHO05D003805 3.6e-16 88.6 127 39.4
BcaB04g21319 Brassica carinata HOM05D003330 ORTHO05D003805 4.6e-16 88.2 127 40.2
AUR62001148 Chenopodium quinoa HOM05D003330 ORTHO05D003805 1.4e-15 86.7 125 36.8
Carub.0003s0680 Capsella rubella HOM05D003330 ORTHO05D003805 1.8e-15 86.3 130 40.8
AT3G07270 Arabidopsis thaliana HOM05D003330 ORTHO05D003805 2.3e-15 85.9 131 40.5
Hund18440 Selenicereus undatus HOM05D003330 ORTHO05D003805 3.0e-15 85.5 130 36.9
EL10Ac6g13981 Beta vulgaris HOM05D003330 ORTHO05D003805 6.7e-15 84.3 130 41.5
EL10Ac7g17933 Beta vulgaris HOM05D003330 ORTHO05D003805 8.8e-15 84.0 132 35.6
Lsat_1_v5_gn_5_177621 Lactuca sativa HOM05D003330 ORTHO05D003805 2.0e-14 82.8 124 37.1
PGR083G2466 Punica granatum HOM05D003330 ORTHO05D003805 2.0e-14 82.8 132 38.6
TAR636G1967 Trochodendron aralioides HOM05D003330 ORTHO05D003805 2.5e-14 82.4 152 36.2
AL3G18570 Arabidopsis lyrata HOM05D003330 ORTHO05D003805 3.3e-14 82.0 131 38.9
TAR365G0843 Trochodendron aralioides HOM05D003330 ORTHO05D003805 3.3e-14 82.0 152 36.2
Eucgr.H00758 Eucalyptus grandis HOM05D003330 ORTHO05D003805 4.3e-14 81.6 120 44.2
Thhalv10020678m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 5.7e-14 81.3 128 37.5
Aa31LG5G17840 Aethionema arabicum HOM05D003330 ORTHO05D003805 1.3e-13 80.1 130 36.9
BcaC05g29742 Brassica carinata HOM05D003330 ORTHO05D003805 1.7e-13 79.7 129 40.3
Psat0s4107g0040 Pisum sativum HOM05D003330 ORTHO05D003805 1.7e-13 79.7 116 44.8
Sp3g06200 Schrenkiella parvula HOM05D003330 ORTHO05D003805 1.7e-13 79.7 130 38.5
EL10Ac5g11651 Beta vulgaris HOM05D003330 ORTHO05D003805 6.3e-13 77.8 128 33.6
AUR62016528 Chenopodium quinoa HOM05D003330 ORTHO05D003805 5.3e-12 74.7 129 35.7
BNapus_Darmor_BZH_scaffold_109p00160 Brassica napus HOM05D003330 ORTHO05D003805 9.1e-12 73.9 125 37.6
Lsat_1_v5_gn_9_17281 Lactuca sativa HOM05D003330 ORTHO05D003805 9.1e-12 73.9 125 38.4
BcaC05g29852 Brassica carinata HOM05D003330 ORTHO05D003805 1.2e-11 73.6 127 38.6
C05p60090 Brassica napus HOM05D003330 ORTHO05D003805 1.2e-11 73.6 127 38.6
BolC5t34662H Brassica oleracea HOM05D003330 ORTHO05D003805 1.2e-11 73.6 127 38.6
Nn1g07549 Nelumbo nucifera HOM05D003330 ORTHO05D003805 1.2e-11 73.6 151 35.1
Sp2g18970 Schrenkiella parvula HOM05D003330 ORTHO05D003805 1.5e-11 73.2 127 34.6
Aqoxy5G00019 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 2.0e-11 72.8 126 36.5
BolC1t05562H Brassica oleracea HOM05D003330 ORTHO05D003805 2.6e-11 72.4 125 36.0
Ah.08g214760 Amaranthus hybridus HOM05D003330 ORTHO05D003805 5.9e-11 71.2 118 36.4
BraA01t04390Z Brassica rapa HOM05D003330 ORTHO05D003805 5.9e-11 71.2 126 36.5
Gohir.D08G057950 Gossypium hirsutum HOM05D003330 ORTHO05D003805 7.7e-11 70.9 80 52.5
A05p40970 Brassica napus HOM05D003330 ORTHO05D003805 1.3e-10 70.1 129 37.2
Thhalv10004230m.g Eutrema salsugineum HOM05D003330 ORTHO05D003805 1.3e-10 70.1 127 34.6
Aqoxy4G02436 Aquilegia oxysepala HOM05D003330 ORTHO05D003805 1.7e-10 69.7 126 35.7
CDE05G3099 Ceratophyllum demersum HOM05D003330 ORTHO05D003805 1.7e-10 69.7 151 32.5
Nn3g20070 Nelumbo nucifera HOM05D003330 ORTHO05D003805 2.9e-10 68.9 127 37.8
CAN.G874.15 Capsicum annuum HOM05D003330 ORTHO05D003805 5.0e-10 68.2 100 44.0
MBI07_g27660_MAGBIO Magnolia biondii HOM05D003330 ORTHO05D003805 6.5e-10 67.8 150 31.3
Migut.N00638 Erythranthe guttata HOM05D003330 ORTHO05D003805 1.1e-09 67.0 105 37.1
BcaB07g30035 Brassica carinata HOM05D003330 ORTHO05D003805 1.9e-09 66.2 112 35.7
PSO063G6993 Papaver somniferum HOM05D003330 ORTHO05D003805 4.2e-09 65.1 144 34.0
PSO017G6109 Papaver somniferum HOM05D003330 ORTHO05D003805 7.2e-09 64.3 149 33.6
arahy.Tifrunner.gnm1.ann1.VPSC2F Arachis hypogaea HOM05D003330 ORTHO05D003805 9.4e-09 63.9 85 43.5
SGA_v2.0_scaffold77G25273 Striga asiatica HOM05D003330 ORTHO05D003805 1.2e-08 63.5 124 31.5
HPP92_011785 Vanilla planifolia HOM05D003330 ORTHO05D003805 1.6e-08 63.2 152 30.9
PSO210G4671 Papaver somniferum HOM05D003330 ORTHO05D003805 2.7e-08 62.4 151 31.8
unitig_0.g1214 Utricularia gibba HOM05D003330 ORTHO05D003805 3.6e-08 62.0 129 35.7
TPR.G29259 Trifolium pratense HOM05D003330 ORTHO05D003805 7.9e-08 60.8 57 56.1
Gorai.004G059200 Gossypium raimondii HOM05D003330 ORTHO05D003805 3.0e-07 58.9 54 55.6
A02p37600 Brassica napus HOM05D003330 ORTHO05D003805 7.4e-06 54.3 115 33.9
TPR.G29156 Trifolium pratense HOM05D003330 ORTHO05D003805 7.4e-06 54.3 59 57.6


User provided reference genes

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