Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g039520 Medicago truncatula HOM05D003174 ORTHO05D003439 6.8e-185 650.6 347 100.0
Medtr5g040080 Medicago truncatula HOM05D003174 ORTHO05D003439 7.6e-176 620.5 347 96.3
TPR.G37089 Trifolium pratense HOM05D003174 ORTHO05D003439 1.0e-116 424.1 386 60.9
TPR.G21831 Trifolium pratense HOM05D000319 ORTHO05D003439 3.1e-113 412.5 382 60.5
Medtr2g014410 Medicago truncatula HOM05D003174 ORTHO05D003439 6.8e-84 315.1 254 69.3
Psat2g183360 Pisum sativum HOM05D003174 ORTHO05D003439 6.8e-84 315.1 379 51.2
Ca_04778_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 1.3e-74 284.3 354 49.4
Lj3g0014619 Lotus japonicus HOM05D003174 ORTHO05D003439 1.5e-43 181.0 339 35.4
arahy.Tifrunner.gnm1.ann1.T81LQ1 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.5e-33 147.1 359 33.4
Glyma.09G003000 Glycine max HOM05D003174 ORTHO05D003439 4.2e-33 146.4 327 34.9
TPR.G28405 Trifolium pratense HOM05D000319 ORTHO05D003439 1.2e-32 144.8 179 53.1
arahy.Tifrunner.gnm1.ann1.7EM6TL Arachis hypogaea HOM05D003174 ORTHO05D003439 2.1e-32 144.1 336 33.6
arahy.Tifrunner.gnm1.ann1.T4VAVP Arachis hypogaea HOM05D003174 ORTHO05D003439 2.0e-27 127.5 345 32.2
arahy.Tifrunner.gnm1.ann1.D9JBU2 Arachis hypogaea HOM05D003174 ORTHO05D003439 2.9e-26 123.6 185 37.3
Phvul.011G086100 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 1.2e-24 118.2 116 52.6
CiPaw.02G056500 Carya illinoinensis HOM05D003174 ORTHO05D003439 3.6e-24 116.7 143 44.8
Cfa015779 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.5e-22 110.5 143 44.8
QL10p045460 Quercus lobata HOM05D003174 ORTHO05D003439 3.7e-21 106.7 110 49.1
TWI15G0304 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.8e-21 106.3 129 42.6
TWI15G0472 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 4.8e-21 106.3 129 42.6
Actinidia35877 Actinidia chinensis HOM05D003174 ORTHO05D003439 3.1e-20 103.6 139 41.7
MBI17_g16533_MAGBIO Magnolia biondii HOM05D003174 ORTHO05D003439 6.9e-20 102.4 123 43.1
VMungo1127G0302 Vigna mungo HOM05D003174 ORTHO05D003439 9.1e-20 102.1 141 41.8
CAN.G74.6 Capsicum annuum HOM05D003174 ORTHO05D003439 1.5e-19 101.3 121 43.8
BcaC09g49501 Brassica carinata HOM05D003174 ORTHO05D003439 2.0e-19 100.9 132 41.7
COL.COLO4_20117 Corchorus olitorius HOM05D003174 ORTHO05D003439 2.6e-19 100.5 123 43.9
Nn1g09826 Nelumbo nucifera HOM05D003174 ORTHO05D003439 3.4e-19 100.1 153 36.6
Gorai.004G087600 Gossypium raimondii HOM05D003174 ORTHO05D003439 4.5e-19 99.8 109 46.8
BolC1t03544H Brassica oleracea HOM05D003174 ORTHO05D003439 5.9e-19 99.4 132 40.9
Gohir.A08G074200 Gossypium hirsutum HOM05D003174 ORTHO05D003439 5.9e-19 99.4 109 46.8
Ciclev10021601m.g Citrus clementina HOM05D003174 ORTHO05D003439 7.7e-19 99.0 144 43.1
Dinv22692 Davidia involucrata HOM05D003174 ORTHO05D003439 7.7e-19 99.0 129 42.6
CsaV3_4G003560 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.0e-18 98.6 144 39.6
Gohir.D08G083400 Gossypium hirsutum HOM05D003174 ORTHO05D003439 1.0e-18 98.6 117 45.3
ClCG07G015840 Citrullus lanatus HOM05D003174 ORTHO05D003439 1.3e-18 98.2 156 37.8
Nitab4.5_0000847g0080 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.3e-18 98.2 148 39.2
Nitab4.5_0004701g0030 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.3e-18 98.2 150 42.0
Sopen04g007790 Solanum pennellii HOM05D003174 ORTHO05D003439 1.3e-18 98.2 129 41.9
Haze_00715 Corylus avellana HOM05D003174 ORTHO05D003439 2.2e-18 97.4 152 44.1
Eucgr.I00627 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.2e-18 97.4 107 44.9
Hma1.2p1_0324F.1_g125650 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 2.2e-18 97.4 133 40.6
Hma1.2p1_3259F.1_g334646 Hydrangea macrophylla HOM05D003174 ORTHO05D003439 2.2e-18 97.4 133 40.6
Solyc04g015710.3 Solanum lycopersicum HOM05D003174 ORTHO05D003439 2.9e-18 97.1 127 40.2
Sed0019898 Sechium edule HOM05D003174 ORTHO05D003439 3.8e-18 96.7 139 39.6
Thhalv10023956m.g Eutrema salsugineum HOM05D001877 ORTHO05D001886 5.0e-18 96.3 119 44.5
Potri.017G036100 Populus trichocarpa HOM05D003174 ORTHO05D003439 6.5e-18 95.9 140 41.4
PGR083G2046 Punica granatum HOM05D003174 ORTHO05D003439 8.5e-18 95.5 113 45.1
GSVIVG01013578001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.4e-17 94.7 94 45.7
CANSAT01G0457 Cannabis sativa HOM05D003174 ORTHO05D003439 1.9e-17 94.4 111 45.0
Atru.chr3.1551 Acer truncatum HOM05D003174 ORTHO05D003439 2.5e-17 94.0 113 46.9
BcaB04g20191 Brassica carinata HOM05D003174 ORTHO05D003439 2.5e-17 94.0 114 44.7
Thecc.05G002600 Theobroma cacao HOM05D003174 ORTHO05D003439 2.5e-17 94.0 114 42.1
MELO3C017697.2 Cucumis melo HOM05D003174 ORTHO05D003439 4.2e-17 93.2 190 34.7
BraA01t02958Z Brassica rapa HOM05D001877 ORTHO05D001886 5.5e-17 92.8 113 43.4
SHI29135 Sapria himalayana HOM05D003174 ORTHO05D003439 5.5e-17 92.8 100 46.0
Rhsim05G0189700 Rhododendron simsii HOM05D003174 ORTHO05D003439 7.2e-17 92.4 139 38.1
RcHm_v2.0_Chr4g0407561 Rosa chinensis HOM05D003174 ORTHO05D003439 7.2e-17 92.4 113 45.1
Sabra07G0100600 Salix brachista HOM05D003174 ORTHO05D003439 7.2e-17 92.4 140 38.6
MD04G1038200 Malus domestica HOM05D003174 ORTHO05D003439 9.4e-17 92.0 114 46.5
Peaxi162Scf00066g01134 Petunia axillaris HOM05D003174 ORTHO05D003439 9.4e-17 92.0 131 41.2
Sabra04G0051000 Salix brachista HOM05D003174 ORTHO05D003439 9.4e-17 92.0 117 38.5
CDE07G1712 Ceratophyllum demersum HOM05D003174 ORTHO05D003439 1.2e-16 91.7 124 40.3
Manes.04G049000 Manihot esculenta HOM05D003174 ORTHO05D003439 1.2e-16 91.7 112 44.6
CSS0007124 Camellia sinensis var. sinensis HOM05D003174 ORTHO05D003439 2.1e-16 90.9 156 37.8
Potri.007G124300 Populus trichocarpa HOM05D003174 ORTHO05D003439 2.1e-16 90.9 142 37.3
Sed0000072 Sechium edule HOM05D003174 ORTHO05D003439 2.7e-16 90.5 157 36.9
AL2G18170 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 3.6e-16 90.1 127 41.7
Migut.H00512 Erythranthe guttata HOM05D003174 ORTHO05D003439 3.6e-16 90.1 134 38.8
Lalb_Chr06g0170971 Lupinus albus HOM05D003174 ORTHO05D003439 3.6e-16 90.1 171 35.7
SGA_v2.0_scaffold6G03139 Striga asiatica HOM05D003174 ORTHO05D003439 3.6e-16 90.1 130 39.2
Gohir.A09G157600 Gossypium hirsutum HOM05D003174 ORTHO05D003439 4.7e-16 89.7 102 43.1
Sp2g05410 Schrenkiella parvula HOM05D001877 ORTHO05D001886 4.7e-16 89.7 113 43.4
TAR362G1036 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.7e-16 89.7 116 42.2
TAR623G0639 Trochodendron aralioides HOM05D003174 ORTHO05D003439 4.7e-16 89.7 147 38.8
Thecc.05G042400 Theobroma cacao HOM05D003174 ORTHO05D003439 6.1e-16 89.4 101 47.5
Ciclev10011079m.g Citrus clementina HOM05D003174 ORTHO05D003439 7.9e-16 89.0 153 35.3
Glyma.13G131100 Glycine max HOM05D003174 ORTHO05D003439 7.9e-16 89.0 124 38.7
TAR629G3457 Trochodendron aralioides HOM05D003174 ORTHO05D003439 7.9e-16 89.0 143 35.7
Potri.004G077400 Populus trichocarpa HOM05D003174 ORTHO05D003439 1.0e-15 88.6 117 37.6
QL07p031124 Quercus lobata HOM05D003174 ORTHO05D003439 1.4e-15 88.2 127 39.4
QL07p047847 Quercus lobata HOM05D003174 ORTHO05D003439 1.4e-15 88.2 127 39.4
HanXRQChr13g0395041 Helianthus annuus HOM05D003174 ORTHO05D003439 2.3e-15 87.4 142 33.8
Lj1g0011268 Lotus japonicus HOM05D003174 ORTHO05D003439 3.0e-15 87.0 164 34.8
PSO384G3329 Papaver somniferum HOM05D035235 ORTHO05D003439 3.0e-15 87.0 128 39.1
Nn2g10415 Nelumbo nucifera HOM05D003174 ORTHO05D003439 3.9e-15 86.7 122 37.7
PSO339G3795 Papaver somniferum HOM05D003174 ORTHO05D003439 3.9e-15 86.7 128 36.7
Cc06_g06750 Coffea canephora HOM05D003174 ORTHO05D003439 5.1e-15 86.3 121 38.0
Manes.08G078100 Manihot esculenta HOM05D003174 ORTHO05D003439 5.1e-15 86.3 101 44.6
Phvul.007G157300 Phaseolus vulgaris HOM05D003174 ORTHO05D003439 5.1e-15 86.3 124 37.9
Duzib093G0200 Durio zibethinus HOM05D003174 ORTHO05D003439 8.8e-15 85.5 129 40.3
AT1G58210 Arabidopsis thaliana HOM05D003174 ORTHO05D003439 1.1e-14 85.1 113 40.7
EL10Ac4g08337 Beta vulgaris HOM05D003174 ORTHO05D003439 1.1e-14 85.1 133 41.4
Sc02g0004510 Simmondsia chinensis HOM05D003174 ORTHO05D003439 1.1e-14 85.1 128 36.7
THA.LOC104802302 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 1.1e-14 85.1 108 42.6
GSVIVG01034205001 Vitis vinifera HOM05D003174 ORTHO05D003439 1.1e-14 85.1 102 41.2
Rhsim02G0075700 Rhododendron simsii HOM05D003174 ORTHO05D003439 1.5e-14 84.7 166 33.7
Cfa017411 Carpinus fangiana HOM05D003174 ORTHO05D003439 2.0e-14 84.3 124 39.5
Haze_00723 Corylus avellana HOM05D000268 ORTHO05D000261 2.0e-14 84.3 146 38.4
Duzib106G0893 Durio zibethinus HOM05D003174 ORTHO05D003439 2.6e-14 84.0 101 44.6
arahy.Tifrunner.gnm1.ann1.6UZP51 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.3e-14 83.6 124 39.5
arahy.Tifrunner.gnm1.ann1.FD13B1 Arachis hypogaea HOM05D003174 ORTHO05D003439 3.3e-14 83.6 124 39.5
PSO532G0060 Papaver somniferum HOM05D003174 ORTHO05D003439 3.3e-14 83.6 112 38.4
arahy.Tifrunner.gnm1.ann1.IJS1VI Arachis hypogaea HOM05D003174 ORTHO05D003439 4.4e-14 83.2 124 39.5
CARHR053810 Cardamine hirsuta HOM05D003174 ORTHO05D003439 4.4e-14 83.2 125 38.4
MELO3C003115.2 Cucumis melo HOM05D003174 ORTHO05D003439 4.4e-14 83.2 165 33.9
MSTRG.924 Avicennia marina HOM05D003174 ORTHO05D003439 9.7e-14 82.0 125 37.6
Gorai.006G174400 Gossypium raimondii HOM05D003174 ORTHO05D003439 9.7e-14 82.0 170 34.7
Aqoxy2G01410 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.3e-13 81.6 151 34.4
Aqoxy4G02974 Aquilegia oxysepala HOM05D003051 ORTHO05D003932 1.3e-13 81.6 151 34.4
EL10Ac4g08332 Beta vulgaris HOM05D003174 ORTHO05D003439 1.3e-13 81.6 137 39.4
CsaV3_4G024810 Cucumis sativus L. HOM05D003174 ORTHO05D003439 1.3e-13 81.6 130 35.4
Migut.C00381 Erythranthe guttata HOM05D003174 ORTHO05D003439 1.3e-13 81.6 156 34.0
Lsat_1_v5_gn_2_36541 Lactuca sativa HOM05D003174 ORTHO05D003439 1.3e-13 81.6 177 31.6
Psat0s2930g0040 Pisum sativum HOM05D003174 ORTHO05D003439 1.3e-13 81.6 133 34.6
SGA_v2.0_scaffold204G41637 Striga asiatica HOM05D003174 ORTHO05D003439 1.3e-13 81.6 221 28.5
Aqoxy4G02973 Aquilegia oxysepala HOM05D003174 ORTHO05D003439 1.7e-13 81.3 197 35.0
FAN17G0897 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.7e-13 81.3 113 43.4
TWI53G0288 Tripterygium wilfordii HOM05D003174 ORTHO05D003439 1.7e-13 81.3 117 38.5
Eucgr.A00550 Eucalyptus grandis HOM05D003174 ORTHO05D003439 2.2e-13 80.9 139 33.8
FAN07G2661 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.2e-13 80.9 113 43.4
MD04G1124900 Malus domestica HOM05D003174 ORTHO05D003439 2.2e-13 80.9 93 45.2
QL09p046209 Quercus lobata HOM05D003174 ORTHO05D003439 2.2e-13 80.9 163 35.0
Haze_20757 Corylus avellana HOM05D003174 ORTHO05D003439 2.8e-13 80.5 110 40.0
FvH4_4g11320 Fragaria vesca HOM05D003174 ORTHO05D003439 3.7e-13 80.1 95 44.2
PSO541G3184 Papaver somniferum HOM05D003174 ORTHO05D003439 3.7e-13 80.1 172 30.2
unitig_736.g22251 Utricularia gibba HOM05D003174 ORTHO05D003439 4.8e-13 79.7 100 40.0
Prupe.6G252000 Prunus persica HOM05D003174 ORTHO05D003439 6.3e-13 79.3 97 41.2
arahy.Tifrunner.gnm1.ann1.Y7W1NJ Arachis hypogaea HOM05D003174 ORTHO05D003439 1.4e-12 78.2 197 33.5
CANSAT21G1894 Cannabis sativa HOM05D003174 ORTHO05D003439 1.4e-12 78.2 138 32.6
TPR.G29857 Trifolium pratense HOM05D003174 ORTHO05D003439 1.8e-12 77.8 112 38.4
AUR62043191 Chenopodium quinoa HOM05D003174 ORTHO05D003439 2.4e-12 77.4 130 38.5
Medtr1g069020 Medicago truncatula HOM05D003174 ORTHO05D003439 3.1e-12 77.0 144 35.4
Peaxi162Scf00165g01840 Petunia axillaris HOM05D003174 ORTHO05D003439 3.1e-12 77.0 140 35.7
Cpa.g.sc260.5 Carica papaya HOM05D003174 ORTHO05D003439 4.1e-12 76.6 113 38.1
Medtr1g069015 Medicago truncatula HOM05D003174 ORTHO05D003439 5.3e-12 76.3 169 30.8
Dinv35623 Davidia involucrata HOM05D003174 ORTHO05D003439 7.0e-12 75.9 150 36.7
Lj3A970G57 Lonicera japonica HOM05D003174 ORTHO05D003439 7.0e-12 75.9 118 36.4
RcHm_v2.0_Chr3g0467041 Rosa chinensis HOM05D003174 ORTHO05D003439 7.0e-12 75.9 177 31.1
VMungo1127G2141 Vigna mungo HOM05D003174 ORTHO05D003439 7.0e-12 75.9 71 52.1
CAN.G97.37 Capsicum annuum HOM05D003174 ORTHO05D003439 9.1e-12 75.5 173 31.8
HanXRQChr13g0395031 Helianthus annuus HOM05D003174 ORTHO05D003439 9.1e-12 75.5 129 34.1
PSO675G7155 Papaver somniferum HOM05D003174 ORTHO05D003439 1.2e-11 75.1 164 32.3
VMungo1127G0815 Vigna mungo HOM05D003174 ORTHO05D003439 1.2e-11 75.1 136 33.8
PGR004G2807 Punica granatum HOM05D003174 ORTHO05D003439 1.5e-11 74.7 95 37.9
AUR62019568 Chenopodium quinoa HOM05D003174 ORTHO05D003439 2.0e-11 74.3 120 41.7
ECA233G3488 Erigeron canadensis HOM05D003174 ORTHO05D003439 2.0e-11 74.3 136 35.3
DCAR_025649 Daucus carota HOM05D003174 ORTHO05D003439 2.6e-11 73.9 118 35.6
PGSC0003DMG400027274 Solanum tuberosum HOM05D003174 ORTHO05D003439 3.5e-11 73.6 100 41.0
THA.LOC104816287 Tarenaya hassleriana HOM05D003174 ORTHO05D003439 4.5e-11 73.2 135 34.8
ECA233G2094 Erigeron canadensis HOM05D003174 ORTHO05D003439 1.0e-10 72.0 115 34.8
PGSC0003DMG400008848 Solanum tuberosum HOM05D003174 ORTHO05D003439 1.0e-10 72.0 124 33.9
HanXRQChr08g0226171 Helianthus annuus HOM05D003174 ORTHO05D003439 1.3e-10 71.6 169 29.6
Cc06_g02840 Coffea canephora HOM05D003174 ORTHO05D003439 1.7e-10 71.2 98 41.8
FAN09G4813 Fragaria x ananassa HOM05D003174 ORTHO05D003439 1.7e-10 71.2 114 31.6
Atru.chr3.120 Acer truncatum HOM05D003174 ORTHO05D003439 3.8e-10 70.1 60 50.0
FvH4_6g25230 Fragaria vesca HOM05D003174 ORTHO05D003439 3.8e-10 70.1 148 30.4
Actinidia11253 Actinidia chinensis HOM05D003174 ORTHO05D003439 6.5e-10 69.3 176 30.7
Ca_27793_v3 Cicer arietinum L. HOM05D003174 ORTHO05D003439 8.5e-10 68.9 104 40.4
Solyc09g010550.4 Solanum lycopersicum HOM05D003174 ORTHO05D003439 8.5e-10 68.9 94 39.4
Os04g0347900 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 1.9e-09 67.8 95 32.6
COL.COLO4_14835 Corchorus olitorius HOM05D003174 ORTHO05D003439 4.2e-09 66.6 74 48.6
Glyma.10G043400 Glycine max HOM05D003174 ORTHO05D003439 4.2e-09 66.6 111 33.3
Nitab4.5_0000761g0050 Nicotiana tabacum HOM05D003174 ORTHO05D003439 5.5e-09 66.2 170 30.6
Sopen09g005270 Solanum pennellii HOM05D003174 ORTHO05D003439 5.5e-09 66.2 125 33.6
FAN02G1934 Fragaria x ananassa HOM05D003174 ORTHO05D003439 7.2e-09 65.9 181 28.7
FAN14G5980 Fragaria x ananassa HOM05D003174 ORTHO05D003439 7.2e-09 65.9 174 31.6
Gohir.D09G152900 Gossypium hirsutum HOM05D003174 ORTHO05D003439 9.4e-09 65.5 61 49.2
Nitab4.5_0004091g0070 Nicotiana tabacum HOM05D003174 ORTHO05D003439 1.2e-08 65.1 139 33.8
FAN05G2164 Fragaria x ananassa HOM05D003174 ORTHO05D003439 2.1e-08 64.3 150 32.7
PGSC0003DMG400027275 Solanum tuberosum HOM05D007490 ORTHO05D008750 2.7e-08 63.9 125 34.4
AL6G11780 Arabidopsis lyrata HOM05D003174 ORTHO05D003439 3.6e-08 63.5 104 34.6
Carub.0006s0132 Capsella rubella HOM05D003174 ORTHO05D003439 3.6e-08 63.5 108 35.2
ATR0019G037 Amborella trichopoda HOM05D003174 ORTHO05D003439 4.7e-08 63.2 96 33.3
TPR.G23103 Trifolium pratense HOM05D003174 ORTHO05D003439 1.4e-07 61.6 77 40.3
vmacro08698 Vaccinium macrocarpon HOM05D003174 ORTHO05D003439 1.8e-07 61.2 101 34.7
SHI12657 Sapria himalayana HOM05D003174 ORTHO05D003439 5.2e-07 59.7 92 37.0
Carub.0002s0640 Capsella rubella HOM05D003174 ORTHO05D003439 6.7e-07 59.3 81 39.5
Os01g0530300 Oryza sativa ssp. japonica HOM05D003174 ORTHO05D003439 8.8e-07 58.9 88 35.2


User provided reference genes

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