Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g039370 Medicago truncatula HOM05D004641 ORTHO05D005871 4.0e-154 548.1 288 100.0
Medtr5g040250 Medicago truncatula HOM05D004641 ORTHO05D005871 1.5e-153 546.2 288 99.7
Ca_24263_v3 Cicer arietinum L. HOM05D004641 ORTHO05D005871 7.0e-143 510.8 288 91.7
Psat2g121160 Pisum sativum HOM05D004641 ORTHO05D005871 1.5e-137 493.0 288 89.9
VMungo1215G3365 Vigna mungo HOM05D004641 ORTHO05D005871 5.6e-132 474.6 288 83.3
Phvul.002G086150 Phaseolus vulgaris HOM05D004641 ORTHO05D005871 2.3e-130 469.2 288 81.2
Glyma.02G106600 Glycine max HOM05D004641 ORTHO05D005871 1.2e-129 466.8 288 83.3
Lalb_Chr10g0098211 Lupinus albus HOM05D004641 ORTHO05D005871 1.3e-125 453.4 288 82.6
Glyma.01G046400 Glycine max HOM05D004641 ORTHO05D005871 6.6e-125 451.1 288 80.2
Lj2g0007835 Lotus japonicus HOM05D004641 ORTHO05D005871 7.3e-124 447.6 288 81.2
GSVIVG01020002001 Vitis vinifera HOM05D004641 ORTHO05D005871 6.2e-115 417.9 289 73.0
CSS0000565 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 8.9e-114 414.1 288 71.9
QL03p064370 Quercus lobata HOM05D004641 ORTHO05D005871 8.9e-114 414.1 287 75.3
CSS0029182 Camellia sinensis var. sinensis HOM05D004641 ORTHO05D005871 1.2e-113 413.7 288 71.9
Prupe.1G273100 Prunus persica HOM05D004641 ORTHO05D005871 2.6e-113 412.5 288 72.6
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea HOM05D004641 ORTHO05D005871 4.4e-113 411.8 292 74.3
Cpa.g.sc128.14 Carica papaya HOM05D004641 ORTHO05D005871 4.4e-113 411.8 286 72.0
CiPaw.05G136500 Carya illinoinensis HOM05D004641 ORTHO05D005871 2.9e-112 409.1 288 73.6
CANSAT64G1560 Cannabis sativa HOM05D004641 ORTHO05D005871 3.8e-112 408.7 292 74.0
Lj3A1038G72 Lonicera japonica HOM05D004641 ORTHO05D005871 6.4e-112 407.9 288 71.9
PGR102G3009 Punica granatum HOM05D004641 ORTHO05D005871 6.4e-112 407.9 286 73.8
Duzib268G0036 Durio zibethinus HOM05D004641 ORTHO05D005871 5.4e-111 404.8 289 71.3
Actinidia04038 Actinidia chinensis HOM05D004641 ORTHO05D005871 7.1e-111 404.4 290 70.3
COL.COLO4_22996 Corchorus olitorius HOM05D004641 ORTHO05D005871 6.0e-110 401.4 289 70.9
Gorai.013G084700 Gossypium raimondii HOM05D004641 ORTHO05D005871 3.0e-109 399.1 287 70.7
FAN22G2174 Fragaria x ananassa HOM05D004641 ORTHO05D005871 8.7e-109 397.5 287 71.8
Gohir.A13G074000 Gossypium hirsutum HOM05D004641 ORTHO05D005871 8.7e-109 397.5 287 70.4
TWI12G0809 Tripterygium wilfordii HOM05D004641 ORTHO05D005871 1.5e-108 396.7 288 70.1
Ciclev10032310m.g Citrus clementina HOM05D004641 ORTHO05D005871 1.9e-108 396.4 288 69.8
FvH4_4g31460 Fragaria vesca HOM05D004641 ORTHO05D005871 1.9e-108 396.4 286 71.7
Eucgr.B03435 Eucalyptus grandis HOM05D004641 ORTHO05D005871 4.3e-108 395.2 286 70.3
Potri.011G083700 Populus trichocarpa HOM05D004641 ORTHO05D005871 4.3e-108 395.2 287 69.7
Gohir.D13G074100 Gossypium hirsutum HOM05D004641 ORTHO05D005871 9.6e-108 394.0 287 70.0
Lalb_Chr17g0340601 Lupinus albus HOM05D004641 ORTHO05D005871 1.3e-107 393.7 245 83.3
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea HOM05D004641 ORTHO05D005871 1.4e-106 390.2 286 72.7
RcHm_v2.0_Chr4g0439951 Rosa chinensis HOM05D004641 ORTHO05D005871 1.4e-106 390.2 281 71.9
Psat0s2466g0040 Pisum sativum HOM05D004641 ORTHO05D005871 2.4e-106 389.4 254 81.5
Cc11_g13100 Coffea canephora HOM05D004641 ORTHO05D005871 5.3e-106 388.3 282 69.5
THA.LOC104822117 Tarenaya hassleriana HOM05D004641 ORTHO05D005871 2.6e-105 386.0 285 68.4
AUR62005767 Chenopodium quinoa HOM05D004641 ORTHO05D005871 7.6e-105 384.4 286 69.2
Oeu001572.1 Olea europaea HOM05D004641 ORTHO05D005871 7.6e-105 384.4 281 68.0
MD13G1073100 Malus domestica HOM05D004641 ORTHO05D005871 9.9e-105 384.0 259 75.3
AUR62028790 Chenopodium quinoa HOM05D004641 ORTHO05D005871 2.2e-104 382.9 286 69.2
TAR629G2466 Trochodendron aralioides HOM05D004641 ORTHO05D005871 4.9e-104 381.7 290 67.6
HanXRQChr12g0362561 Helianthus annuus HOM05D004641 ORTHO05D005871 1.9e-103 379.8 282 67.7
FAN17G1817 Fragaria x ananassa HOM05D004641 ORTHO05D005871 2.4e-103 379.4 297 68.0
Peaxi162Scf00541g00527 Petunia axillaris HOM05D004641 ORTHO05D005871 4.2e-103 378.6 282 68.8
MSTRG.7808 Avicennia marina HOM05D004641 ORTHO05D005871 5.4e-103 378.3 283 67.8
Sabra11G0066400 Salix brachista HOM05D004641 ORTHO05D005871 7.1e-103 377.9 287 67.9
Hund25250 Selenicereus undatus HOM05D004641 ORTHO05D005871 3.5e-102 375.6 286 68.5
TAR622G0412 Trochodendron aralioides HOM05D004641 ORTHO05D005871 6.0e-102 374.8 294 66.0
Nn3g17219 Nelumbo nucifera HOM05D004641 ORTHO05D005871 7.9e-102 374.4 293 66.2
ECA233G1872 Erigeron canadensis HOM05D004641 ORTHO05D005871 1.3e-101 373.6 282 66.0
Haze_12020 Corylus avellana HOM05D004641 ORTHO05D005871 1.7e-101 373.2 288 68.8
MBI05_g35443_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.7e-101 373.2 292 67.8
Nitab4.5_0000703g0120 Nicotiana tabacum HOM05D004641 ORTHO05D005871 3.0e-101 372.5 282 67.7
HanXRQChr08g0210501 Helianthus annuus HOM05D004641 ORTHO05D005871 3.9e-101 372.1 282 68.1
Sc11g0001860 Simmondsia chinensis HOM05D004641 ORTHO05D005871 6.6e-101 371.3 286 67.8
CiPaw.06G083900 Carya illinoinensis HOM05D004641 ORTHO05D005871 8.7e-101 370.9 244 77.9
FAN12G2116 Fragaria x ananassa HOM05D001668 ORTHO05D005871 8.7e-101 370.9 272 70.6
FAN07G1510 Fragaria x ananassa HOM05D004641 ORTHO05D005871 3.3e-100 369.0 272 70.6
PGSC0003DMG400003384 Solanum tuberosum HOM05D004641 ORTHO05D005871 3.3e-100 369.0 282 66.7
EL10Ac6g13193 Beta vulgaris HOM05D004641 ORTHO05D005871 7.4e-100 367.9 320 63.1
ClCG11G009310 Citrullus lanatus HOM05D004641 ORTHO05D005871 9.6e-100 367.5 281 66.5
Solyc05g007450.3 Solanum lycopersicum HOM05D004641 ORTHO05D005871 1.3e-99 367.1 282 66.3
SalBow2G2171 Salvia bowleyana HOM05D004641 ORTHO05D005871 3.6e-99 365.5 283 65.7
Sopen05g003330 Solanum pennellii HOM05D004641 ORTHO05D005871 4.8e-99 365.2 282 66.3
BcaC05g26381 Brassica carinata HOM05D004641 ORTHO05D005871 8.1e-99 364.4 285 67.4
C05p24110 Brassica napus HOM05D004641 ORTHO05D005871 8.1e-99 364.4 285 67.4
BolC5t31146H Brassica oleracea HOM05D004641 ORTHO05D005871 8.1e-99 364.4 285 67.4
DCAR_007149 Daucus carota HOM05D004641 ORTHO05D005871 2.4e-98 362.8 290 65.9
CARHR025060 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.0e-98 362.1 285 66.3
Migut.L01304 Erythranthe guttata HOM05D004641 ORTHO05D005871 4.0e-98 362.1 280 65.7
Manes.01G186500 Manihot esculenta HOM05D004641 ORTHO05D005871 6.9e-98 361.3 229 76.9
Aa31LG7G8260 Aethionema arabicum HOM05D004641 ORTHO05D005871 4.5e-97 358.6 285 66.3
A09p40260 Brassica napus HOM05D004641 ORTHO05D005871 7.6e-97 357.8 278 67.3
BraA09t39524Z Brassica rapa HOM05D004641 ORTHO05D005871 7.6e-97 357.8 278 67.3
AL1G38720 Arabidopsis lyrata HOM05D004641 ORTHO05D005871 1.3e-96 357.1 285 66.0
CAN.G58.35 Capsicum annuum HOM05D004641 ORTHO05D005871 2.9e-96 355.9 282 64.2
Aqoxy3G03361 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 3.8e-96 355.5 292 63.7
Zm00001eb328260 Zea mays HOM05D004641 ORTHO05D005871 3.8e-96 355.5 287 64.5
CsaV3_2G010800 Cucumis sativus L. HOM05D004641 ORTHO05D005871 4.9e-96 355.1 281 64.1
PSO478G0089 Papaver somniferum HOM05D004641 ORTHO05D005871 4.9e-96 355.1 291 62.9
AT1G26840 Arabidopsis thaliana HOM05D004641 ORTHO05D005871 1.1e-95 354.0 285 65.6
Carub.0001s2410 Capsella rubella HOM05D004641 ORTHO05D005871 3.2e-95 352.4 277 67.9
vmacro04307 Vaccinium macrocarpon HOM05D004641 ORTHO05D005871 3.2e-95 352.4 230 74.8
Sp1g21940 Schrenkiella parvula HOM05D004641 ORTHO05D005871 4.2e-95 352.1 285 64.9
Thecc.02G351000 Theobroma cacao HOM05D004641 ORTHO05D005871 4.2e-95 352.1 230 75.2
PSO017G4882 Papaver somniferum HOM05D004641 ORTHO05D005871 1.6e-94 350.1 291 62.9
BcaB03g12011 Brassica carinata HOM05D004641 ORTHO05D005871 2.1e-94 349.7 285 65.6
BcaC07g39267 Brassica carinata HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
C08p22760 Brassica napus HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
BolC8t49912H Brassica oleracea HOM05D004641 ORTHO05D005871 2.7e-94 349.4 285 65.6
Aqoxy5G03781 Aquilegia oxysepala HOM05D004641 ORTHO05D005871 4.6e-94 348.6 292 62.3
BraA08t34696Z Brassica rapa HOM05D004641 ORTHO05D005871 6.0e-94 348.2 285 65.6
A08p27580 Brassica napus HOM05D004641 ORTHO05D005871 7.9e-94 347.8 285 65.6
Thhalv10008398m.g Eutrema salsugineum HOM05D004641 ORTHO05D005871 3.0e-93 345.9 283 64.7
Ah.03g135170 Amaranthus hybridus HOM05D004641 ORTHO05D005871 3.9e-93 345.5 286 66.8
Rhsim07G0243500 Rhododendron simsii HOM05D004641 ORTHO05D005871 5.1e-93 345.1 229 72.9
Os07g0628600 Oryza sativa ssp. japonica HOM05D004641 ORTHO05D005871 3.3e-92 342.4 292 63.0
MELO3C008530.2 Cucumis melo HOM05D004641 ORTHO05D005871 4.3e-92 342.0 259 66.4
HPP92_016908 Vanilla planifolia HOM05D004641 ORTHO05D005871 1.6e-91 340.1 288 62.2
MD16G1074100 Malus domestica HOM05D004641 ORTHO05D005871 6.2e-91 338.2 275 65.5
Atru.chr11.1801 Acer truncatum HOM05D004641 ORTHO05D005871 1.1e-90 337.4 216 75.0
SGA_v2.0_scaffold302G47825 Striga asiatica HOM05D004641 ORTHO05D005871 4.0e-90 335.5 288 63.5
Nitab4.5_0012364g0020 Nicotiana tabacum HOM05D004641 ORTHO05D005871 9.0e-90 334.3 282 62.4
CDE04G3358 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 1.9e-87 326.6 295 58.6
Sp5g24800 Schrenkiella parvula HOM05D004641 ORTHO05D005871 5.5e-87 325.1 252 67.5
Sed0002473 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-86 323.6 239 67.4
Sed0021592 Sechium edule HOM05D004641 ORTHO05D005871 1.6e-86 323.6 286 61.5
Dinv16637 Davidia involucrata HOM05D004641 ORTHO05D005871 2.1e-86 323.2 218 74.3
SGA_v2.0_scaffold53G19380 Striga asiatica HOM05D004641 ORTHO05D005871 3.5e-86 322.4 288 60.4
ATR0800G170 Amborella trichopoda HOM05D004641 ORTHO05D005871 5.3e-82 308.5 229 67.2
Lsat_1_v5_gn_8_52860 Lactuca sativa HOM05D004641 ORTHO05D005871 6.9e-82 308.1 282 58.5
CARHR062650 Cardamine hirsuta HOM05D004641 ORTHO05D005871 4.6e-78 295.4 245 62.4
Oeu054890.1 Olea europaea HOM05D004641 ORTHO05D005871 5.1e-77 292.0 231 64.1
Oeu054889.1 Olea europaea HOM05D004641 ORTHO05D005871 4.3e-76 288.9 231 63.6
SEGI_09090 Sequoiadendron giganteum HOM05D004641 ORTHO05D005871 3.1e-74 282.7 230 60.0
SHI55061 Sapria himalayana HOM05D004641 ORTHO05D005871 1.0e-72 277.7 233 58.8
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis HOM05D004641 ORTHO05D005871 1.6e-70 270.4 292 49.7
Mapoly0064s0110 Marchantia polymorpha HOM05D004641 ORTHO05D005871 1.2e-65 254.2 275 49.8
Pp3c13_2030 Physcomitrium patens HOM05D004641 ORTHO05D005871 5.9e-65 251.9 289 45.3
MBI09_g01021_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 7.4e-60 235.0 213 61.0
Gohir.A01G134350 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.7e-59 233.8 156 69.9
Gohir.A07G052500 Gossypium hirsutum HOM05D004641 ORTHO05D005871 1.0e-56 224.6 139 75.5
Gohir.A08G223448 Gossypium hirsutum HOM05D004641 ORTHO05D005871 7.5e-52 208.4 140 73.6
SMO114G0050 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.2e-51 206.8 197 49.2
MBI02_g14195_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 2.8e-51 206.5 215 55.3
unitig_22.g6910 Utricularia gibba HOM05D004641 ORTHO05D005871 3.7e-51 206.1 265 46.0
CDE08G0800 Ceratophyllum demersum HOM05D004641 ORTHO05D005871 4.8e-51 205.7 263 46.4
SMO117G0352 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 8.2e-51 204.9 197 49.2
SMO254G0007 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.4e-50 203.4 197 48.2
MBI05_g01300_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-50 203.0 228 52.6
SMO254G0005 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 5.3e-50 202.2 197 48.2
MBI10_g44256_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 3.1e-42 176.4 162 59.3
SMO254G0008 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 1.6e-41 174.1 197 44.2
CBR_g31088 Chara braunii HOM05D000019 ORTHO05D000048 6.8e-37 158.7 183 47.5
TPR.G37129 Trifolium pratense HOM05D004641 ORTHO05D005871 3.7e-35 152.9 77 98.7
MD16G1073900 Malus domestica HOM05D004641 ORTHO05D005871 2.8e-30 136.7 83 81.9
Thecc.03G087000 Theobroma cacao HOM05D004641 ORTHO05D005871 1.3e-27 127.9 119 56.3
MBI10_g47167_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 6.4e-27 125.6 220 41.8
MBI10_g06043_MAGBIO Magnolia biondii HOM05D004641 ORTHO05D005871 1.1e-26 124.8 206 41.3
C05p19510 Brassica napus HOM05D004641 ORTHO05D005871 2.0e-25 120.6 106 61.3
BolC5t30653H Brassica oleracea HOM05D004641 ORTHO05D005871 2.0e-25 120.6 106 61.3
SMO254G0011 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.7e-25 120.2 188 35.1
PRCOL_00006308 Prasinoderma coloniale HOM05D004641 ORTHO05D005871 3.3e-23 113.2 217 32.7
Cre06.g285650 Chlamydomonas reinhardtii HOM05D004641 ORTHO05D005871 5.6e-23 112.5 190 37.4
SMO254G0019 Selaginella moellendorffii HOM05D004641 ORTHO05D005871 2.8e-22 110.2 205 32.7
MBI13_g45115_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 3.4e-20 103.2 59 83.1
MBI14_g27757_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.4e-18 97.8 58 79.3
MBI18_g33078_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 4.1e-18 96.3 57 78.9
MBI11_g16036_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.2e-17 94.7 58 77.6
MBI16_g45579_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 1.1e-15 88.2 68 67.6
MBI13_g16082_MAGBIO Magnolia biondii HOM05D001399 ORTHO05D012970 6.2e-14 82.4 54 74.1
CBR_g31090 Chara braunii HOM05D004641 ORTHO05D005871 1.5e-12 77.8 91 39.6
A10p02040 Brassica napus HOM05D000207 ORTHO05D013918 9.8e-12 75.1 51 68.6
A02p16560 Brassica napus HOM05D004641 ORTHO05D005871 6.6e-08 62.4 89 42.7
A09p47150 Brassica napus HOM05D004641 ORTHO05D022007 2.8e-06 57.0 60 45.0
BraA09t40177Z Brassica rapa HOM05D004641 ORTHO05D022007 2.8e-06 57.0 60 45.0


User provided reference genes

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