Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g038870 Medicago truncatula HOM05D009713 ORTHO05D001923 4.1e-77 291.2 136 100.0
Medtr1g052330 Medicago truncatula HOM05D009713 ORTHO05D012664 7.9e-20 100.9 67 71.6
Medtr0003s0160 Medicago truncatula HOM05D009713 ORTHO05D012664 1.7e-17 93.2 59 74.6
Medtr0439s0040 Medicago truncatula HOM05D009713 ORTHO05D012664 1.1e-16 90.5 44 88.6
Medtr6g016455 Medicago truncatula HOM05D009713 ORTHO05D012664 1.3e-14 83.6 73 60.3
Medtr4g070040 Medicago truncatula HOM05D001579 ORTHO05D003470 3.8e-14 82.0 87 56.3
TPR.G19411 Trifolium pratense HOM05D001579 ORTHO05D003470 5.0e-14 81.6 91 54.9
TPR.G23438 Trifolium pratense HOM05D001579 ORTHO05D003470 3.2e-13 79.0 94 52.1
Lj1g0020223 Lotus japonicus HOM05D001579 ORTHO05D003470 1.2e-12 77.0 87 52.9
Medtr2g060880 Medicago truncatula HOM05D002090 ORTHO05D001923 1.6e-12 76.6 48 68.8
Ca_01102_v3 Cicer arietinum L. HOM05D001579 ORTHO05D003470 6.1e-12 74.7 79 55.7
Psat7g141360 Pisum sativum HOM05D001579 ORTHO05D003470 1.8e-11 73.2 87 51.7
VMungo1127G1806 Vigna mungo HOM05D001579 ORTHO05D003470 5.1e-11 71.6 91 49.5
Medtr7g046960 Medicago truncatula HOM05D009713 ORTHO05D001923 8.8e-11 70.9 41 78.0
Lj3g0013700 Lotus japonicus HOM05D001579 ORTHO05D003470 2.6e-10 69.3 78 51.3
Phvul.011G045200 Phaseolus vulgaris HOM05D001579 ORTHO05D003470 3.3e-10 68.9 87 48.3
Rhsim05G0074300 Rhododendron simsii HOM05D001579 ORTHO05D003470 3.3e-10 68.9 99 44.4
Glyma.11G117800 Glycine max HOM05D001579 ORTHO05D003470 4.4e-10 68.6 91 48.4
Lalb_Chr03g0025691 Lupinus albus HOM05D001579 ORTHO05D003470 1.3e-09 67.0 91 48.4
TAR376G1017 Trochodendron aralioides HOM05D001579 ORTHO05D003470 1.3e-09 67.0 98 44.9
Medtr8g468190 Medicago truncatula HOM05D009713 ORTHO05D012664 1.7e-09 66.6 66 48.5
arahy.Tifrunner.gnm1.ann1.D5Q7RU Arachis hypogaea HOM05D001579 ORTHO05D003470 2.2e-09 66.2 91 47.3
arahy.Tifrunner.gnm1.ann1.IB6GCN Arachis hypogaea HOM05D001579 ORTHO05D003470 2.8e-09 65.9 90 47.8
arahy.Tifrunner.gnm1.ann1.5AJQ1U Arachis hypogaea HOM05D001579 ORTHO05D003470 3.7e-09 65.5 86 41.9
Glyma.12G043200 Glycine max HOM05D001579 ORTHO05D003470 3.7e-09 65.5 91 46.2
Cpa.g.sc62.152 Carica papaya HOM05D001579 ORTHO05D003470 4.8e-09 65.1 99 43.4
TAR628G1064 Trochodendron aralioides HOM05D001579 ORTHO05D003470 6.3e-09 64.7 90 46.7
Rhsim11G0177200 Rhododendron simsii HOM05D001579 ORTHO05D003470 1.4e-08 63.5 95 43.2
Actinidia00524 Actinidia chinensis HOM05D001579 ORTHO05D003470 1.8e-08 63.2 87 44.8
ClCG10G001880 Citrullus lanatus HOM05D001579 ORTHO05D003470 1.8e-08 63.2 98 42.9
Actinidia27894 Actinidia chinensis HOM05D001579 ORTHO05D003470 3.1e-08 62.4 85 48.2
CSS0013099 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 3.1e-08 62.4 78 47.4
GSVIVG01031967001 Vitis vinifera HOM05D001579 ORTHO05D003470 3.1e-08 62.4 79 48.1
MBI01_g34891_MAGBIO Magnolia biondii HOM05D001579 ORTHO05D003470 4.1e-08 62.0 104 40.4
Sc13g0008990 Simmondsia chinensis HOM05D001579 ORTHO05D003470 4.1e-08 62.0 94 42.6
Lalb_Chr01g0002541 Lupinus albus HOM05D001579 ORTHO05D003470 5.3e-08 61.6 88 46.6
Prupe.8G096800 Prunus persica HOM05D001579 ORTHO05D003470 5.3e-08 61.6 79 46.8
QL11p043704 Quercus lobata HOM05D001579 ORTHO05D003470 5.3e-08 61.6 92 43.5
Haze_02385 Corylus avellana HOM05D001579 ORTHO05D003470 7.0e-08 61.2 93 44.1
Nn1g01939 Nelumbo nucifera HOM05D001579 ORTHO05D003470 7.0e-08 61.2 77 48.1
Atru.chr5.3017 Acer truncatum HOM05D001579 ORTHO05D003470 9.1e-08 60.8 80 46.2
HanXRQChr14g0437911 Helianthus annuus HOM05D001579 ORTHO05D003470 9.1e-08 60.8 90 44.4
vmacro11112 Vaccinium macrocarpon HOM05D001579 ORTHO05D003470 9.1e-08 60.8 69 49.3
Eucgr.D00245 Eucalyptus grandis HOM05D001579 ORTHO05D003470 1.2e-07 60.5 77 46.8
CSS0049673 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 1.5e-07 60.1 78 46.2
Thecc.02G085100 Theobroma cacao HOM05D001579 ORTHO05D003470 1.5e-07 60.1 55 61.8
Manes.17G101200 Manihot esculenta HOM05D001579 ORTHO05D003470 2.0e-07 59.7 91 44.0
CDE04G1236 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 2.6e-07 59.3 91 44.0
CsaV3_3G002020 Cucumis sativus L. HOM05D001579 ORTHO05D003470 2.6e-07 59.3 98 40.8
MD10G1076200 Malus domestica HOM05D001579 ORTHO05D003470 3.4e-07 58.9 66 48.5
Oeu041647.1 Olea europaea HOM05D001579 ORTHO05D003470 3.4e-07 58.9 90 44.4
CSS0031219 Camellia sinensis var. sinensis HOM05D001579 ORTHO05D003470 4.5e-07 58.5 78 46.2
COL.COLO4_25932 Corchorus olitorius HOM05D001579 ORTHO05D003470 4.5e-07 58.5 55 58.2
Nitab4.5_0000974g0080 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.5e-07 58.5 48 58.3
Nitab4.5_0011688g0020 Nicotiana tabacum HOM05D001579 ORTHO05D003470 4.5e-07 58.5 78 42.3
Sed0021732 Sechium edule HOM05D001579 ORTHO05D003470 4.5e-07 58.5 54 57.4
Sopen02g035480 Solanum pennellii HOM05D001579 ORTHO05D003470 4.5e-07 58.5 60 51.7
Ciclev10028310m.g Citrus clementina HOM05D001579 ORTHO05D003470 5.9e-07 58.2 80 46.2
TWI79G0010 Tripterygium wilfordii HOM05D001579 ORTHO05D003470 5.9e-07 58.2 92 41.3
Aa31LG7G14810 Aethionema arabicum HOM05D001579 ORTHO05D003470 7.7e-07 57.8 62 53.2
Migut.B00751 Erythranthe guttata HOM05D001579 ORTHO05D003470 7.7e-07 57.8 98 40.8
Hma1.2p1_1375F.1_g279070 Hydrangea macrophylla HOM05D001579 ORTHO05D003470 7.7e-07 57.8 67 50.7
MD05G1066200 Malus domestica HOM05D001579 ORTHO05D003470 7.7e-07 57.8 77 44.2
Nitab4.5_0004172g0030 Nicotiana tabacum HOM05D001579 ORTHO05D003470 7.7e-07 57.8 48 56.2
Peaxi162Scf00016g00732 Petunia axillaris HOM05D001579 ORTHO05D003470 7.7e-07 57.8 48 58.3
THA.LOC104804143 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 7.7e-07 57.8 62 53.2
AL7G11270 Arabidopsis lyrata HOM05D001579 ORTHO05D003470 1.0e-06 57.4 55 58.2
Cfa005003 Carpinus fangiana HOM05D001579 ORTHO05D003470 1.0e-06 57.4 87 43.7
MELO3C013873.2 Cucumis melo HOM05D001579 ORTHO05D003470 1.0e-06 57.4 54 57.4
Duzib132G0542 Durio zibethinus HOM05D001579 ORTHO05D003470 1.0e-06 57.4 56 62.5
ECA240G1027 Erigeron canadensis HOM05D001579 ORTHO05D003470 1.0e-06 57.4 53 58.5
PGR042G0613 Punica granatum HOM05D001579 ORTHO05D003470 1.0e-06 57.4 94 39.4
TPR.G19193 Trifolium pratense HOM05D000006 ORTHO05D000001 1.0e-06 57.4 65 44.6
EL10Ac3g05071 Beta vulgaris HOM05D001579 ORTHO05D003470 1.3e-06 57.0 41 70.7
CANSAT80G0427 Cannabis sativa HOM05D001579 ORTHO05D003470 1.3e-06 57.0 54 57.4
CDE06G0853 Ceratophyllum demersum HOM05D001579 ORTHO05D003470 1.3e-06 57.0 91 42.9
Solyc02g090860.3 Solanum lycopersicum HOM05D001579 ORTHO05D003470 1.3e-06 57.0 48 56.2
Carub.0007s0120 Capsella rubella HOM05D001579 ORTHO05D003470 1.7e-06 56.6 55 56.4
CiPaw.05G064600 Carya illinoinensis HOM05D001579 ORTHO05D003470 1.7e-06 56.6 32 81.2
THA.LOC104824827 Tarenaya hassleriana HOM05D001579 ORTHO05D003470 1.7e-06 56.6 55 58.2
ATR0051G048 Amborella trichopoda HOM05D001579 ORTHO05D003470 2.2e-06 56.2 78 43.6
Gorai.012G155500 Gossypium raimondii HOM05D001579 ORTHO05D003470 2.2e-06 56.2 55 58.2
PSO478G3633 Papaver somniferum HOM05D001579 ORTHO05D003470 2.2e-06 56.2 68 44.1
PGSC0003DMG400025010 Solanum tuberosum HOM05D001579 ORTHO05D003470 2.2e-06 56.2 48 54.2
AT4G39280 Arabidopsis thaliana HOM05D001579 ORTHO05D003470 2.9e-06 55.8 55 54.5
Gohir.A04G130900 Gossypium hirsutum HOM05D001579 ORTHO05D003470 2.9e-06 55.8 55 58.2
Gohir.D04G167200 Gossypium hirsutum HOM05D001579 ORTHO05D003470 2.9e-06 55.8 55 58.2
Ah.02g117280 Amaranthus hybridus HOM05D001579 ORTHO05D003470 3.8e-06 55.5 86 43.0
Medtr0758s0030 Medicago truncatula HOM05D009713 ORTHO05D012664 3.8e-06 55.5 45 57.8
PGSC0003DMG400004021 Solanum tuberosum HOM05D001579 ORTHO05D003470 3.8e-06 55.5 48 54.2
CAN.G1298.23 Capsicum annuum HOM05D001579 ORTHO05D003470 5.0e-06 55.1 69 42.0
CARHR247410 Cardamine hirsuta HOM05D001579 ORTHO05D003470 5.0e-06 55.1 55 56.4
Cc02_g25820 Coffea canephora HOM05D001579 ORTHO05D003470 5.0e-06 55.1 87 40.2
Medtr3g027755 Medicago truncatula HOM05D009713 ORTHO05D263876 5.0e-06 55.1 69 46.4
Nitab4.5_0000308g0090 Nicotiana tabacum HOM05D001579 ORTHO05D003470 5.0e-06 55.1 48 52.1
Aa31LG3G6010 Aethionema arabicum HOM05D001579 ORTHO05D003470 6.5e-06 54.7 55 58.2
MSTRG.16808 Avicennia marina HOM05D001579 ORTHO05D003470 6.5e-06 54.7 78 42.3
SEGI_12575 Sequoiadendron giganteum HOM05D001579 ORTHO05D003470 6.5e-06 54.7 54 57.4
Lj2C359T3 Lonicera japonica HOM05D001579 ORTHO05D003470 8.5e-06 54.3 79 39.2
Hund14641 Selenicereus undatus HOM05D001579 ORTHO05D003470 8.5e-06 54.3 41 65.9


User provided reference genes

Program Settings