Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 5.5e-292 1006.9 508 100.0
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 5.5e-292 1006.9 508 100.0
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 5.6e-236 820.8 513 82.8
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 6.2e-235 817.4 540 78.3
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 6.2e-235 817.4 544 78.3
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 4.0e-234 814.7 540 78.1
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 2.0e-233 812.4 518 81.1
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 5.8e-233 810.8 522 79.1
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 2.4e-226 788.9 531 78.9
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 1.3e-224 783.1 517 78.1
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 3.1e-218 761.9 523 74.0
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 6.9e-218 760.8 522 73.9
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 9.0e-218 760.4 522 74.5
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.8e-213 746.1 527 74.2
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 3.9e-213 745.0 524 73.3
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 3.9e-213 745.0 526 73.6
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 5.1e-213 744.6 528 72.5
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 6.7e-213 744.2 527 73.4
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 1.9e-212 742.7 521 73.1
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 4.3e-212 741.5 525 73.5
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 9.6e-212 740.3 518 75.3
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 8.1e-211 737.3 523 70.9
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.9e-209 730.3 518 71.6
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 1.7e-208 729.6 402 90.0
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 2.9e-208 728.8 521 72.0
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 3.8e-208 728.4 527 71.0
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 6.4e-208 727.6 521 71.8
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 6.4e-208 727.6 522 73.0
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-207 726.5 515 71.8
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 1.4e-207 726.5 524 71.4
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-207 726.1 515 71.7
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 7.1e-207 724.2 520 71.3
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.2e-206 723.4 537 69.8
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.1e-206 722.6 545 69.7
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 4.6e-206 721.5 529 70.3
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 5.1e-205 718.0 522 70.3
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 2.5e-204 715.7 533 69.4
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 7.4e-204 714.1 523 71.7
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 7.4e-204 714.1 521 71.2
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 7.4e-204 714.1 528 69.7
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 2.1e-203 712.6 525 70.9
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 4.8e-203 711.4 521 69.5
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 6.2e-203 711.1 586 62.8
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 8.2e-203 710.7 524 69.8
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 5.8e-201 704.5 467 76.7
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 1.3e-200 703.4 434 80.0
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.2e-200 702.6 505 71.5
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 2.9e-200 702.2 524 69.1
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 2.5e-199 699.1 521 70.1
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 1.2e-198 696.8 522 69.3
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 3.9e-197 691.8 526 69.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 8.7e-197 690.6 434 79.0
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 4.3e-196 688.3 503 71.0
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.6e-195 686.4 474 73.2
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 4.8e-195 684.9 529 67.1
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 6.3e-195 684.5 529 66.9
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 1.1e-194 683.7 518 69.1
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 1.4e-194 683.3 527 69.1
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 3.4e-193 678.7 525 68.4
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 1.1e-191 673.7 476 71.6
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 9.4e-191 670.6 527 66.2
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 1.2e-190 670.2 459 71.9
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.2e-190 670.2 522 68.4
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.6e-190 669.8 453 73.5
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 8.8e-189 664.1 476 70.2
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 1.5e-188 663.3 434 76.3
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.8e-187 659.1 522 66.1
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 6.3e-187 657.9 528 65.3
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 8.2e-187 657.5 524 67.0
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.1e-186 657.1 524 67.4
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 1.4e-186 656.8 404 80.9
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 3.1e-186 655.6 528 64.6
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 2.6e-185 652.5 521 65.5
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 7.7e-185 651.0 525 65.0
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 1.3e-184 650.2 527 65.3
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 1.7e-184 649.8 524 64.9
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 1.7e-184 649.8 524 64.9
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 2.2e-184 649.4 519 65.7
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 8.5e-184 647.5 519 66.9
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 7.2e-183 644.4 519 65.1
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 1.6e-182 643.3 481 69.0
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 1.0e-181 640.6 541 61.4
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 1.8e-181 639.8 490 65.5
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 5.1e-181 638.3 543 63.2
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 3.7e-179 632.1 469 67.2
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 1.8e-178 629.8 485 66.8
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 4.1e-178 628.6 806 47.5
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 2.9e-176 622.5 392 76.5
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 3.8e-176 622.1 527 62.8
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 3.6e-174 615.5 411 73.2
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 2.2e-171 606.3 392 76.0
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 2.6e-169 599.4 427 69.8
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 6.5e-168 594.7 482 64.9
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 8.3e-163 577.8 502 61.6
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 3.1e-162 575.9 489 61.1
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 1.0e-160 570.9 465 64.7
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.9e-160 569.3 473 63.6
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 5.5e-159 565.1 580 54.5
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 1.4e-157 560.5 404 70.5
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.3e-157 559.7 451 64.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 5.2e-157 558.5 456 62.7
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.2e-156 557.4 554 56.0
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 4.5e-153 545.4 434 68.9
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 6.6e-152 541.6 405 71.6
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 2.1e-150 536.6 548 54.7
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 2.5e-143 513.1 455 60.7
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 5.4e-138 495.4 455 55.6
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 1.5e-132 477.2 451 55.9
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 4.9e-131 472.2 535 52.7
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.8e-125 453.8 434 53.7
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 5.8e-124 448.7 360 65.0
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 3.5e-121 439.5 495 48.5
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 8.6e-120 434.9 270 83.0
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.6e-118 429.5 453 55.0
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 2.2e-115 420.2 453 50.3
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 6.0e-113 412.1 485 49.3
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 4.3e-111 406.0 215 93.0
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 6.5e-91 339.0 438 44.7
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 6.5e-91 339.0 438 42.7
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 8.7e-88 328.6 396 50.3
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 8.7e-88 328.6 298 56.4
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 4.2e-82 309.7 365 48.8
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 2.8e-78 297.0 462 40.7
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 4.7e-65 253.1 231 63.6
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.1e-61 240.0 187 66.8
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 1.4e-56 224.9 159 67.9
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 2.2e-54 217.6 267 47.6
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 9.4e-50 202.2 255 47.1
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.1e-49 201.1 247 48.2
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 8.8e-48 195.7 159 62.3
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 2.7e-41 174.1 125 76.8
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.0e-40 172.2 455 33.4
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 5.7e-39 166.4 116 67.2
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.5e-39 166.0 250 43.6
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 4.1e-37 160.2 252 43.7
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 4.1e-37 160.2 125 65.6
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 1.6e-36 158.3 245 44.5
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 1.3e-35 155.2 97 76.3
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 1.3e-35 155.2 162 54.9
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.2e-34 149.4 234 43.6
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.2e-34 149.4 154 55.8
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 1.2e-33 148.7 166 52.4
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 2.1e-33 147.9 100 69.0
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.4e-32 145.2 156 55.8
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-32 145.2 154 56.5
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 2.2e-30 137.9 104 59.6
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 4.1e-29 133.7 112 58.9
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 7.0e-29 132.9 96 66.7
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 2.3e-24 117.9 79 73.4
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.5e-23 115.2 232 34.9
arahy.Tifrunner.gnm1.ann1.LXEN71 Arachis hypogaea HOM05D000344 ORTHO05D005296 1.3e-22 112.1 61 86.9
arahy.Tifrunner.gnm1.ann1.2FV8W6 Arachis hypogaea HOM05D000344 ORTHO05D005296 4.9e-22 110.2 61 86.9
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 4.1e-21 107.1 222 36.9
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 2.0e-20 104.8 222 36.0
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 3.9e-19 100.5 94 53.2
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 8.6e-19 99.4 118 52.5
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 2.5e-18 97.8 113 54.9
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 3.7e-14 84.0 144 35.4
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.4e-14 83.2 93 47.3
FvH4_6g18751 Fragaria vesca HOM05D004140 ORTHO05D018624 4.6e-12 77.0 119 44.5
FAN05G4745 Fragaria x ananassa HOM05D000532 ORTHO05D002414 1.5e-10 72.0 252 28.2
BcaC05g27055 Brassica carinata HOM05D004140 ORTHO05D018624 4.0e-08 63.9 38 84.2
C05p29120 Brassica napus HOM05D004140 ORTHO05D018624 4.0e-08 63.9 38 84.2
BolC5t31642H Brassica oleracea HOM05D004140 ORTHO05D018624 4.0e-08 63.9 38 84.2
C02p01230 Brassica napus HOM05D004140 ORTHO05D024608 2.0e-07 61.6 38 71.1
C02p01370 Brassica napus HOM05D004140 ORTHO05D024608 2.0e-07 61.6 38 71.1
C02p01440 Brassica napus HOM05D004140 ORTHO05D024608 2.0e-07 61.6 38 71.1
BolC2t06113H Brassica oleracea HOM05D004140 ORTHO05D024608 2.0e-07 61.6 38 71.1
C02p01250 Brassica napus HOM05D004140 ORTHO05D010099 1.7e-06 58.5 43 74.4


User provided reference genes

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