Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g030020 Medicago truncatula HOM05D005581 ORTHO05D006792 2.0e-118 429.1 209 100.0
Medtr7g038730 Medicago truncatula HOM05D005581 ORTHO05D006792 2.0e-118 429.1 209 100.0
TPR.G39154 Trifolium pratense HOM05D005581 ORTHO05D006792 6.3e-101 370.9 214 85.5
Glyma.13G116200 Glycine max HOM05D005581 ORTHO05D006792 8.5e-90 334.0 198 78.8
Ca_19611_v3 Cicer arietinum L. HOM05D005581 ORTHO05D006792 2.7e-88 328.9 204 81.9
Lj2g0014392 Lotus japonicus HOM05D005581 ORTHO05D006792 2.3e-87 325.9 201 77.6
VMungo1215G0614 Vigna mungo HOM05D005581 ORTHO05D006792 1.5e-86 323.2 186 80.6
Psat3g165640 Pisum sativum HOM05D005581 ORTHO05D006792 3.4e-86 322.0 203 78.3
arahy.Tifrunner.gnm1.ann1.B679M5 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.3e-85 320.1 198 77.3
arahy.Tifrunner.gnm1.ann1.2M0NJC Arachis hypogaea HOM05D005581 ORTHO05D006792 8.3e-85 317.4 200 77.5
Lalb_Chr05g0228941 Lupinus albus HOM05D005581 ORTHO05D006792 1.4e-84 316.6 213 74.2
arahy.Tifrunner.gnm1.ann1.E9CGF1 Arachis hypogaea HOM05D005581 ORTHO05D006792 1.8e-84 316.2 200 77.5
arahy.Tifrunner.gnm1.ann1.UYM2HQ Arachis hypogaea HOM05D005581 ORTHO05D006792 9.1e-84 313.9 193 77.2
GSVIVG01032543001 Vitis vinifera HOM05D005581 ORTHO05D006792 2.0e-83 312.8 199 75.9
Cfa007475 Carpinus fangiana HOM05D005581 ORTHO05D006792 1.3e-82 310.1 202 73.3
TAR629G0716 Trochodendron aralioides HOM05D005581 ORTHO05D006792 1.3e-82 310.1 206 69.4
Phvul.003G125600 Phaseolus vulgaris HOM05D005581 ORTHO05D006792 2.3e-82 309.3 203 74.4
Ciclev10012718m.g Citrus clementina HOM05D005581 ORTHO05D006792 6.6e-82 307.8 207 70.0
QL02p078462 Quercus lobata HOM05D005581 ORTHO05D006792 1.9e-81 306.2 180 78.9
Lj2g0006948 Lotus japonicus HOM05D005581 ORTHO05D006792 3.3e-81 305.4 176 81.2
Prupe.3G278300 Prunus persica HOM05D005581 ORTHO05D006792 3.3e-81 305.4 209 69.4
CiPaw.04G022300 Carya illinoinensis HOM05D005581 ORTHO05D006792 9.5e-81 303.9 204 72.1
Lalb_Chr21g0319231 Lupinus albus HOM05D005581 ORTHO05D006792 1.2e-80 303.5 205 72.7
Cpa.g.sc14.80 Carica papaya HOM05D005581 ORTHO05D006792 1.0e-79 300.4 204 69.1
Eucgr.J02171 Eucalyptus grandis HOM05D005581 ORTHO05D006792 2.3e-79 299.3 200 71.0
RcHm_v2.0_Chr2g0170291 Rosa chinensis HOM05D005581 ORTHO05D006792 2.0e-78 296.2 211 67.3
Nn3g17019 Nelumbo nucifera HOM05D005581 ORTHO05D006792 3.4e-78 295.4 191 72.3
CSS0034562 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.2e-77 292.7 203 70.4
CSS0041908 Camellia sinensis var. sinensis HOM05D005581 ORTHO05D006792 2.2e-77 292.7 203 70.4
Potri.001G470300 Populus trichocarpa HOM05D005581 ORTHO05D006792 2.8e-77 292.4 190 72.1
Manes.15G178800 Manihot esculenta HOM05D005581 ORTHO05D006792 3.7e-77 292.0 193 71.5
PGR083G1021 Punica granatum HOM05D005581 ORTHO05D006792 6.3e-77 291.2 189 72.0
Actinidia36059 Actinidia chinensis HOM05D005581 ORTHO05D006792 1.8e-76 289.7 193 71.0
PSO832G0275 Papaver somniferum HOM05D005581 ORTHO05D006792 1.8e-76 289.7 172 74.4
Hund12510 Selenicereus undatus HOM05D005581 ORTHO05D006792 4.1e-76 288.5 189 73.5
Dinv33676 Davidia involucrata HOM05D005581 ORTHO05D006792 5.4e-76 288.1 207 66.2
FAN05G2284 Fragaria x ananassa HOM05D005581 ORTHO05D006792 5.4e-76 288.1 210 66.7
FvH4_6g50030 Fragaria vesca HOM05D005581 ORTHO05D006792 1.2e-75 287.0 205 67.3
PSO591G0467 Papaver somniferum HOM05D005581 ORTHO05D006792 1.2e-75 287.0 194 67.5
Ciclev10016724m.g Citrus clementina HOM05D005581 ORTHO05D006792 2.0e-75 286.2 195 70.3
Hma1.2p1_1975F.1_g309690 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 3.5e-75 285.4 197 68.5
MBI15_g35865_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 3.5e-75 285.4 178 74.2
Sabra16G0319200 Salix brachista HOM05D005581 ORTHO05D006792 3.5e-75 285.4 191 71.7
PSO063G2781 Papaver somniferum HOM05D005581 ORTHO05D006792 7.8e-75 284.3 173 72.3
Sc06g0002610 Simmondsia chinensis HOM05D005581 ORTHO05D006792 1.7e-74 283.1 188 70.2
Thecc.04G002800 Theobroma cacao HOM05D005581 ORTHO05D006792 1.7e-74 283.1 199 66.8
Hma1.2p1_0375F.1_g139010 Hydrangea macrophylla HOM05D005581 ORTHO05D006792 2.3e-74 282.7 202 67.3
CDE06G0044 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 5.0e-74 281.6 196 66.3
Duzib147G0516 Durio zibethinus HOM05D005581 ORTHO05D006792 6.6e-74 281.2 187 71.1
FAN09G0871 Fragaria x ananassa HOM05D005581 ORTHO05D006792 6.6e-74 281.2 202 66.8
Actinidia06044 Actinidia chinensis HOM05D005581 ORTHO05D006792 8.6e-74 280.8 201 68.2
ATR0624G029 Amborella trichopoda HOM05D005581 ORTHO05D006792 1.1e-73 280.4 190 68.9
FAN14G0942 Fragaria x ananassa HOM05D005581 ORTHO05D006792 1.5e-73 280.0 197 68.0
TWI12G0742 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 1.5e-73 280.0 191 71.7
MSTRG.23979 Avicennia marina HOM05D005581 ORTHO05D006792 3.3e-73 278.9 185 69.7
MELO3C033644.2 Cucumis melo HOM05D005581 ORTHO05D006792 4.3e-73 278.5 200 65.0
Sed0016453 Sechium edule HOM05D005581 ORTHO05D006792 4.3e-73 278.5 178 71.3
Sopen02g032000 Solanum pennellii HOM05D005581 ORTHO05D006792 5.6e-73 278.1 198 64.6
DCAR_003657 Daucus carota HOM05D005581 ORTHO05D006792 7.3e-73 277.7 175 72.0
MD17G1040700 Malus domestica HOM05D005581 ORTHO05D006792 1.2e-72 276.9 208 64.9
PGSC0003DMG400001392 Solanum tuberosum HOM05D005581 ORTHO05D006792 1.6e-72 276.6 198 64.6
Aqoxy3G03110 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.1e-72 276.2 191 67.0
COL.COLO4_06153 Corchorus olitorius HOM05D000793 ORTHO05D000783 4.7e-72 275.0 193 66.3
EL10Ac7g18001 Beta vulgaris HOM05D005581 ORTHO05D006792 6.1e-72 274.6 199 67.8
Duzib187G0556 Durio zibethinus HOM05D005581 ORTHO05D006792 8.0e-72 274.2 191 67.5
Nitab4.5_0004905g0030 Nicotiana tabacum HOM05D000793 ORTHO05D006792 1.0e-71 273.9 194 65.5
Peaxi162Scf00129g00828 Petunia axillaris HOM05D000793 ORTHO05D000783 1.0e-71 273.9 196 65.8
CsaV3_5G037490 Cucumis sativus L. HOM05D005581 ORTHO05D006792 1.4e-71 273.5 200 63.5
Oeu031508.1 Olea europaea HOM05D005581 ORTHO05D006792 1.4e-71 273.5 192 68.2
Solyc02g087250.4 Solanum lycopersicum HOM05D000793 ORTHO05D000783 1.4e-71 273.5 195 65.1
Nitab4.5_0007185g0080 Nicotiana tabacum HOM05D005581 ORTHO05D006792 1.8e-71 273.1 197 65.5
Oeu062376.1 Olea europaea HOM05D005581 ORTHO05D006792 1.8e-71 273.1 196 68.4
RhsimUnG0168100 Rhododendron simsii HOM05D005581 ORTHO05D006792 1.8e-71 273.1 197 67.0
SHI25585 Sapria himalayana HOM05D005581 ORTHO05D006792 1.8e-71 273.1 193 67.4
HPP92_026859 Vanilla planifolia HOM05D005581 ORTHO05D006792 3.1e-71 272.3 170 72.9
Atru.BG.224.p Acer truncatum HOM05D005581 ORTHO05D006792 2.6e-70 269.2 165 73.9
Aqoxy3G03108 Aquilegia oxysepala HOM05D005581 ORTHO05D006792 2.9e-69 265.8 169 70.4
Carub.0003s2629 Capsella rubella HOM05D005581 ORTHO05D006792 2.9e-69 265.8 199 64.8
CAN.G206.63 Capsicum annuum HOM05D005581 ORTHO05D006792 3.7e-69 265.4 198 62.6
Gorai.001G259000 Gossypium raimondii HOM05D005581 ORTHO05D006792 3.7e-69 265.4 195 64.6
ClCG00G001710 Citrullus lanatus HOM05D005581 ORTHO05D006792 4.9e-69 265.0 214 60.7
ClCG09G018630 Citrullus lanatus HOM05D005581 ORTHO05D006792 4.9e-69 265.0 214 60.7
Os06g0238300 Oryza sativa ssp. japonica HOM05D005581 ORTHO05D006792 4.9e-69 265.0 170 70.0
Migut.H00163 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.9e-68 263.1 183 68.3
Gohir.A05G361700 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.9e-68 263.1 191 65.4
Gohir.D07G224600 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.9e-68 263.1 192 65.1
ECA240G2828 Erigeron canadensis HOM05D005581 ORTHO05D006792 4.1e-68 261.9 191 64.9
Zm00001eb279970 Zea mays HOM05D005581 ORTHO05D006792 4.1e-68 261.9 165 69.1
CARHR102620 Cardamine hirsuta HOM05D005581 ORTHO05D006792 5.4e-68 261.5 201 64.2
Gohir.A07G217500 Gossypium hirsutum HOM05D005581 ORTHO05D006792 5.4e-68 261.5 192 64.6
AUR62022121 Chenopodium quinoa HOM05D005581 ORTHO05D006792 7.0e-68 261.2 192 66.7
SGA_v2.0_scaffold135G34832 Striga asiatica HOM05D005581 ORTHO05D006792 9.2e-68 260.8 200 65.0
AL3G42310 Arabidopsis lyrata HOM05D005581 ORTHO05D006792 1.2e-67 260.4 176 70.5
Psat3g011960 Pisum sativum HOM05D005581 ORTHO05D006792 1.2e-67 260.4 161 79.5
Lsat_1_v5_gn_0_16520 Lactuca sativa HOM05D005581 ORTHO05D006792 1.6e-67 260.0 184 67.4
SalBow1G8695 Salvia bowleyana HOM05D005581 ORTHO05D006792 2.0e-67 259.6 185 65.9
DCAR_011192 Daucus carota HOM05D005581 ORTHO05D006792 3.5e-67 258.8 208 61.5
PSO832G2358 Papaver somniferum HOM05D005581 ORTHO05D006792 6.0e-67 258.1 209 58.9
Gohir.D04G052800 Gossypium hirsutum HOM05D005581 ORTHO05D006792 1.3e-66 256.9 191 63.9
Gorai.012G059200 Gossypium raimondii HOM05D005581 ORTHO05D006792 1.7e-66 256.5 187 65.2
AUR62001208 Chenopodium quinoa HOM05D005581 ORTHO05D006792 2.3e-66 256.1 191 65.4
AT2G04690 Arabidopsis thaliana HOM05D005581 ORTHO05D006792 3.0e-66 255.8 175 69.7
SEGI_16176 Sequoiadendron giganteum HOM05D005581 ORTHO05D006792 1.2e-64 250.4 172 65.7
Hund20033 Selenicereus undatus HOM05D005581 ORTHO05D006792 1.6e-64 250.0 190 63.2
EL10Ac7g18000 Beta vulgaris HOM05D005581 ORTHO05D006792 2.8e-64 249.2 201 61.7
Thhalv10027934m.g Eutrema salsugineum HOM05D005581 ORTHO05D006792 2.8e-64 249.2 175 67.4
Lj7A408G12 Lonicera japonica HOM05D005581 ORTHO05D006792 3.1e-63 245.7 146 74.0
Sp7g01930 Schrenkiella parvula HOM05D005581 ORTHO05D006792 5.2e-63 245.0 175 66.9
BcaB06g27424 Brassica carinata HOM05D005581 ORTHO05D006792 5.8e-62 241.5 194 60.8
TWI12G0286 Tripterygium wilfordii HOM05D005581 ORTHO05D006792 9.8e-62 240.7 191 65.4
C04p46650 Brassica napus HOM05D005581 ORTHO05D006792 1.3e-61 240.4 198 61.1
BolC4t26253H Brassica oleracea HOM05D005581 ORTHO05D006792 1.3e-61 240.4 198 61.1
BraA04t16955Z Brassica rapa HOM05D005581 ORTHO05D006792 3.7e-61 238.8 198 61.1
A04p12950 Brassica napus HOM05D005581 ORTHO05D006792 6.4e-61 238.0 198 61.1
THA.LOC104823921 Tarenaya hassleriana HOM05D005581 ORTHO05D006792 1.1e-60 237.3 189 60.8
vmacro05787 Vaccinium macrocarpon HOM05D005581 ORTHO05D006792 4.1e-60 235.3 153 71.2
MD09G1040100 Malus domestica HOM05D005581 ORTHO05D006792 1.0e-58 230.7 312 43.9
Atru.chr8.2410 Acer truncatum HOM05D005581 ORTHO05D006792 4.4e-54 215.3 129 71.3
AagrBONN_evm.TU.Sc2ySwM_368.1768 Anthoceros agrestis HOM05D005581 ORTHO05D006792 4.9e-53 211.8 186 55.9
SMO356G0730 Selaginella moellendorffii HOM05D005581 ORTHO05D006792 4.9e-53 211.8 167 59.9
Cc07_g02660 Coffea canephora HOM05D005581 ORTHO05D006792 3.0e-50 202.6 159 62.9
Aa31LG9G1540 Aethionema arabicum HOM05D005581 ORTHO05D006792 6.6e-50 201.4 153 67.3
Haze_14640 Corylus avellana HOM05D005581 ORTHO05D006792 2.8e-48 196.1 128 75.0
Mapoly0035s0056 Marchantia polymorpha HOM05D005581 ORTHO05D006792 3.1e-47 192.6 164 51.8
Pp3c1_40840 Physcomitrium patens HOM05D005581 ORTHO05D006792 1.0e-42 177.6 190 46.3
CBR_g36833 Chara braunii HOM05D005581 ORTHO05D006792 2.4e-36 156.4 198 44.4
MSTRG.21916 Avicennia marina HOM05D005581 ORTHO05D006792 1.9e-33 146.7 169 47.9
PRCOL_00005184 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 3.3e-33 146.0 169 43.2
Glyma.17G043600 Glycine max HOM05D005581 ORTHO05D006792 5.6e-33 145.2 78 83.3
Migut.H00162 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.1e-31 141.0 159 45.9
Migut.N00270 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.1e-31 141.0 171 44.4
Migut.H00166 Erythranthe guttata HOM05D005581 ORTHO05D006792 1.4e-31 140.6 193 42.0
Cre10.g440700 Chlamydomonas reinhardtii HOM05D005581 ORTHO05D006792 2.5e-25 119.8 186 33.9
SalBow3G2496 Salvia bowleyana HOM05D005581 ORTHO05D006792 6.2e-24 115.2 166 39.2
HPP92_018422 Vanilla planifolia HOM05D005581 ORTHO05D006792 1.1e-20 104.4 61 72.1
Medtr8g106160 Medicago truncatula HOM05D005581 ORTHO05D006792 2.5e-17 93.2 48 100.0
PRCOL_00002387 Prasinoderma coloniale HOM05D005581 ORTHO05D006792 4.0e-15 85.9 172 34.3
arahy.Tifrunner.gnm1.ann1.C3UJQ4 Arachis hypogaea HOM05D005581 ORTHO05D006792 2.9e-13 79.7 71 59.2
HanXRQChr17g0548091 Helianthus annuus HOM05D005581 ORTHO05D006792 1.9e-12 77.0 65 52.3
CDE06G0755 Ceratophyllum demersum HOM05D005581 ORTHO05D006792 5.5e-12 75.5 67 59.7
MBI15_g46244_MAGBIO Magnolia biondii HOM05D005581 ORTHO05D006792 2.2e-08 63.5 64 54.7


User provided reference genes

Program Settings