Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g037280 Medicago truncatula HOM05D004846 ORTHO05D005630 0.0e+00 2216.4 1116 100.0
TPR.G9064 Trifolium pratense HOM05D004846 ORTHO05D005630 0.0e+00 1931.8 1132 86.6
Glyma.19G082100 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1904.4 1117 85.0
VMungo1127G0826 Vigna mungo HOM05D004846 ORTHO05D005630 0.0e+00 1855.9 1127 82.0
Lj1g0007607 Lotus japonicus HOM05D004846 ORTHO05D005630 0.0e+00 1853.2 1119 83.4
Lalb_Chr24g0403411 Lupinus albus HOM05D004846 ORTHO05D005630 0.0e+00 1812.0 1112 81.9
arahy.Tifrunner.gnm1.ann1.QFX8QT Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1718.4 1117 77.1
arahy.Tifrunner.gnm1.ann1.EI4BFE Arachis hypogaea HOM05D004846 ORTHO05D005630 0.0e+00 1715.7 1117 76.9
Phvul.008G148206 Phaseolus vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1596.3 959 83.6
Psat3g169160 Pisum sativum HOM05D004846 ORTHO05D005630 0.0e+00 1543.1 841 91.7
Dinv25698 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1531.9 1117 68.6
Cfa007283 Carpinus fangiana HOM05D004846 ORTHO05D005630 0.0e+00 1530.0 1128 68.2
QL02p072992 Quercus lobata HOM05D004846 ORTHO05D005630 0.0e+00 1521.5 1122 67.9
CANSAT64G0871 Cannabis sativa HOM05D004846 ORTHO05D005630 0.0e+00 1521.1 1117 68.1
Prupe.3G299200 Prunus persica HOM05D004846 ORTHO05D005630 0.0e+00 1515.7 1115 67.7
GSVIVG01027213001 Vitis vinifera HOM05D004846 ORTHO05D005630 0.0e+00 1499.6 1129 67.2
Potri.001G338000 Populus trichocarpa HOM05D004846 ORTHO05D005630 0.0e+00 1498.4 1117 67.1
TAR371G0224 Trochodendron aralioides HOM05D004846 ORTHO05D005630 0.0e+00 1483.0 1117 66.6
Atru.chr6.2483 Acer truncatum HOM05D004846 ORTHO05D005630 0.0e+00 1465.7 1117 66.5
CSS0030635 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 0.0e+00 1460.7 1118 66.0
Ciclev10014098m.g Citrus clementina HOM05D004846 ORTHO05D005630 0.0e+00 1458.4 1118 66.4
MD09G1017700 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1444.9 1114 65.4
CsaV3_3G046520 Cucumis sativus L. HOM05D004846 ORTHO05D005630 0.0e+00 1438.7 1117 64.6
Sabra16G0218700 Salix brachista HOM05D004846 ORTHO05D005630 0.0e+00 1427.9 1184 62.4
Sed0008655 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1420.2 1120 63.4
MD17G1018500 Malus domestica HOM05D004846 ORTHO05D005630 0.0e+00 1416.0 1114 64.5
Actinidia05946 Actinidia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1410.2 1113 64.3
FvH4_6g52480 Fragaria vesca HOM05D004846 ORTHO05D005630 0.0e+00 1409.4 1117 64.0
Thecc.04G024900 Theobroma cacao HOM05D004846 ORTHO05D005630 0.0e+00 1407.9 1125 64.0
FAN14G2722 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1406.3 1117 63.8
FAN05G3122 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1404.0 1127 63.4
Cc07_g00370 Coffea canephora HOM05D004846 ORTHO05D005630 0.0e+00 1400.2 1112 62.8
ClCG05G017040 Citrullus lanatus HOM05D004846 ORTHO05D005630 0.0e+00 1399.0 1184 60.6
RcHm_v2.0_Chr2g0174121 Rosa chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1398.6 1123 63.5
FAN02G3962 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1394.8 1117 63.5
TWI15G0720 Tripterygium wilfordii HOM05D004846 ORTHO05D005630 0.0e+00 1392.5 1124 63.8
Sc09g0010530 Simmondsia chinensis HOM05D004846 ORTHO05D005630 0.0e+00 1387.9 1116 62.8
Eucgr.J02281 Eucalyptus grandis HOM05D004846 ORTHO05D005630 0.0e+00 1385.5 1122 64.0
FAN09G4064 Fragaria x ananassa HOM05D004846 ORTHO05D005630 0.0e+00 1385.5 1115 62.9
MBI15_g38527_MAGBIO Magnolia biondii HOM05D004846 ORTHO05D005630 0.0e+00 1372.1 1150 61.3
PGR083G2372 Punica granatum HOM05D004846 ORTHO05D005630 0.0e+00 1371.3 1120 62.9
Migut.H00055 Erythranthe guttata HOM05D004846 ORTHO05D005630 0.0e+00 1369.8 1117 61.9
Hund19592 Selenicereus undatus HOM05D004846 ORTHO05D005630 0.0e+00 1367.8 1113 61.9
Oeu062399.1 Olea europaea HOM05D004846 ORTHO05D005630 0.0e+00 1367.1 1139 61.2
PSO210G2938 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1363.2 1118 61.9
Solyc02g093770.3 Solanum lycopersicum HOM05D004846 ORTHO05D005630 0.0e+00 1363.2 1114 62.4
Gohir.D10G085400 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1362.8 1117 62.3
Sopen02g038410 Solanum pennellii HOM05D004846 ORTHO05D005630 0.0e+00 1362.8 1114 62.3
Nitab4.5_0001863g0210 Nicotiana tabacum HOM05D004846 ORTHO05D005630 0.0e+00 1361.3 1116 61.7
Gorai.011G093300 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1359.0 1117 62.1
Haze_14810 Corylus avellana HOM05D004846 ORTHO05D005630 0.0e+00 1353.2 1173 61.6
PSO210G2073 Papaver somniferum HOM05D004846 ORTHO05D005630 0.0e+00 1352.8 1120 62.1
ECA233G5463 Erigeron canadensis HOM05D004846 ORTHO05D005630 0.0e+00 1352.0 1116 61.9
AUR62031596 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1350.9 1119 61.1
Sed0014062 Sechium edule HOM05D004846 ORTHO05D005630 0.0e+00 1349.0 1117 61.1
AUR62012470 Chenopodium quinoa HOM05D004846 ORTHO05D005630 0.0e+00 1345.1 1136 60.7
Glyma.16G063300 Glycine max HOM05D004846 ORTHO05D005630 0.0e+00 1341.3 798 84.2
Duzib187G0011 Durio zibethinus HOM05D004846 ORTHO05D005630 0.0e+00 1340.5 1069 64.3
Rhsim10G0011500 Rhododendron simsii HOM05D004846 ORTHO05D005630 0.0e+00 1338.6 1157 60.6
MSTRG.24063 Avicennia marina HOM05D004846 ORTHO05D005630 0.0e+00 1328.9 1119 60.0
CAN.G473.55 Capsicum annuum HOM05D004846 ORTHO05D005630 0.0e+00 1325.5 1113 60.7
THA.LOC104805347 Tarenaya hassleriana HOM05D004846 ORTHO05D005630 0.0e+00 1322.4 1111 61.2
Ah.10g035510 Amaranthus hybridus HOM05D004846 ORTHO05D005630 0.0e+00 1321.6 1118 61.2
Lsat_1_v5_gn_5_21981 Lactuca sativa HOM05D004846 ORTHO05D005630 0.0e+00 1313.9 1126 59.9
EL10Ac2g04126 Beta vulgaris HOM05D004846 ORTHO05D005630 0.0e+00 1310.0 1175 57.6
Cpa.g.sc130.45 Carica papaya HOM05D004846 ORTHO05D005630 0.0e+00 1310.0 1132 61.0
HanXRQChr07g0193151 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1309.3 1113 60.2
HanXRQChr02g0054051 Helianthus annuus HOM05D004846 ORTHO05D005630 0.0e+00 1308.5 1118 60.7
vmacro05920 Vaccinium macrocarpon HOM05D004846 ORTHO05D005630 0.0e+00 1303.1 1127 60.5
Lj3C906G17 Lonicera japonica HOM05D004846 ORTHO05D005630 0.0e+00 1298.1 1121 59.9
Dinv00597 Davidia involucrata HOM05D004846 ORTHO05D005630 0.0e+00 1285.4 915 70.2
Gohir.D09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1285.0 1089 60.8
Gorai.006G037800 Gossypium raimondii HOM05D004846 ORTHO05D005630 0.0e+00 1284.2 1103 60.1
CiPaw.03G050100 Carya illinoinensis HOM05D004846 ORTHO05D005630 0.0e+00 1274.6 956 67.6
Manes.15G092600 Manihot esculenta HOM05D004846 ORTHO05D005630 0.0e+00 1273.5 956 68.0
ATR0751G144 Amborella trichopoda HOM05D004846 ORTHO05D005630 0.0e+00 1272.3 1201 55.8
Carub.0005s0560 Capsella rubella HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1112 59.1
Gohir.A09G032800 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1268.1 1103 59.8
Peaxi162Scf00420g00255 Petunia axillaris HOM05D004846 ORTHO05D005630 0.0e+00 1263.1 1101 59.2
Sp2g16490 Schrenkiella parvula HOM05D004846 ORTHO05D005630 0.0e+00 1261.9 1112 58.9
BcaC06g33832 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1258.0 1116 58.7
A06p41290 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1124 58.7
BraA06t27054Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1257.7 1124 58.7
Thhalv10003555m.g Eutrema salsugineum HOM05D004846 ORTHO05D005630 0.0e+00 1256.1 1112 59.2
BolC7t44153H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1255.4 1125 58.3
DCAR_013672 Daucus carota HOM05D004846 ORTHO05D005630 0.0e+00 1255.0 1117 57.8
BcaC06g31008 Brassica carinata HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 1116 58.8
C07p36370 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1253.4 1117 58.0
AT3G27325 Arabidopsis thaliana HOM05D004846 ORTHO05D005630 0.0e+00 1246.5 1114 58.6
MELO3C003688.2 Cucumis melo HOM05D004846 ORTHO05D005630 0.0e+00 1242.6 1021 62.1
AL5G16590 Arabidopsis lyrata HOM05D004846 ORTHO05D005630 0.0e+00 1239.2 1115 58.3
C02p54070 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1236.9 1115 58.3
SGA_v2.0_scaffold66G22277 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1234.2 1181 55.2
BolC2t11469H Brassica oleracea HOM05D004846 ORTHO05D005630 0.0e+00 1226.8 1117 57.9
COL.COLO4_29272 Corchorus olitorius HOM05D004846 ORTHO05D005630 0.0e+00 1211.4 1005 62.7
A02p35330 Brassica napus HOM05D004846 ORTHO05D005630 0.0e+00 1209.5 1119 57.2
SalBow2G2965 Salvia bowleyana HOM05D004846 ORTHO05D005630 0.0e+00 1209.1 1166 55.4
Aa31LG2G5360 Aethionema arabicum HOM05D004846 ORTHO05D005630 0.0e+00 1205.3 1134 56.2
CARHR040910 Cardamine hirsuta HOM05D004846 ORTHO05D005630 0.0e+00 1202.6 1113 56.5
Os09g0266400 Oryza sativa ssp. japonica HOM05D004846 ORTHO05D005630 0.0e+00 1199.1 1113 55.3
SGA_v2.0_scaffold135G34938 Striga asiatica HOM05D004846 ORTHO05D005630 0.0e+00 1194.9 1004 60.7
BraA02t08536Z Brassica rapa HOM05D004846 ORTHO05D005630 0.0e+00 1190.3 1126 55.9
HPP92_021915 Vanilla planifolia HOM05D004846 ORTHO05D005630 0.0e+00 1143.3 1126 54.4
Hma1.2p1_0279F.1_g112220 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 0.0e+00 1130.5 795 70.2
Gohir.A10G160700 Gossypium hirsutum HOM05D004846 ORTHO05D005630 0.0e+00 1125.2 955 60.4
CDE01G0149 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 0.0e+00 1098.6 1086 54.3
PGSC0003DMG403020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 0.0e+00 1093.2 904 61.4
PGSC0003DMG402020229 Solanum tuberosum HOM05D004846 ORTHO05D005630 2.6e-302 1042.3 747 68.7
Mapoly0133s0025 Marchantia polymorpha HOM05D004846 ORTHO05D005630 2.4e-300 1035.8 1150 50.2
CDE02G2253 Ceratophyllum demersum HOM05D004846 ORTHO05D005630 6.4e-277 958.0 1034 50.9
Nn7g36106 Nelumbo nucifera HOM05D004846 ORTHO05D005630 1.5e-273 946.8 647 71.7
Pp3c3_36830 Physcomitrium patens HOM05D004846 ORTHO05D005630 1.4e-268 930.2 1131 45.3
Pp3c12_23520 Physcomitrium patens HOM05D004846 ORTHO05D005630 3.0e-258 896.0 1152 43.1
AagrBONN_evm.TU.Sc2ySwM_228.569 Anthoceros agrestis HOM05D004846 ORTHO05D005630 1.1e-255 887.5 1011 48.9
SMO119G0307 Selaginella moellendorffii HOM05D004846 ORTHO05D005630 1.3e-240 837.4 1104 42.9
Zm00001eb308720 Zea mays HOM05D004846 ORTHO05D005630 2.5e-236 823.2 819 52.3
Pp3c14_5780 Physcomitrium patens HOM05D004846 ORTHO05D005630 2.3e-197 693.7 984 41.3
Ca_26120_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.4e-191 672.5 536 67.2
unitig_1.g29345 Utricularia gibba HOM05D004846 ORTHO05D005630 7.6e-177 625.5 1110 37.5
Dinv33387 Davidia involucrata HOM05D004846 ORTHO05D005630 1.8e-157 561.2 422 67.1
unitig_747.g22069 Utricularia gibba HOM05D004846 ORTHO05D005630 5.6e-156 556.2 1131 35.2
SHI03857 Sapria himalayana HOM05D004846 ORTHO05D000023 1.4e-151 541.6 448 60.9
SEGI_08787 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.3e-115 422.2 331 61.3
unitig_748.g6968 Utricularia gibba HOM05D004846 ORTHO05D005630 1.2e-105 389.0 322 62.4
Ca_14683_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 5.0e-104 383.6 232 84.1
CBR_g922 Chara braunii HOM05D004846 ORTHO05D005630 2.9e-96 357.8 1174 26.7
unitig_748.g6967 Utricularia gibba HOM05D004846 ORTHO05D005630 1.1e-85 322.8 525 39.0
SEGI_28297 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 1.8e-69 268.9 376 41.2
CSS0035751 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.4e-66 257.3 257 56.0
Actinidia36162 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.0e-64 253.1 378 40.5
CSS0049777 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.0e-64 251.5 261 53.6
Actinidia36160 Actinidia chinensis HOM05D004846 ORTHO05D005630 1.0e-56 226.5 231 51.5
CSS0015891 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 3.9e-56 224.6 211 56.9
CSS0005966 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 5.6e-55 220.7 225 54.2
Hma1.2p1_0279F.1_g112210 Hydrangea macrophylla HOM05D004846 ORTHO05D005630 1.3e-48 199.5 212 51.4
Cfa027235 Carpinus fangiana HOM05D004846 ORTHO05D005630 1.5e-44 186.0 374 35.0
Ca_26612_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 4.9e-43 181.0 241 49.0
CSS0025976 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-42 179.9 223 45.7
CSS0029627 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-42 179.9 223 45.7
CSS0035603 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.1e-42 179.9 223 45.7
CSS0050182 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 4.2e-42 177.9 223 45.3
CSS0012369 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 9.3e-42 176.8 223 45.3
CSS0012376 Camellia sinensis var. sinensis HOM05D004846 ORTHO05D005630 4.8e-38 164.5 238 42.9
Nn7g36110 Nelumbo nucifera HOM05D004846 ORTHO05D005630 4.5e-36 157.9 144 58.3
Ca_30652_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 2.2e-35 155.6 81 92.6
CSS0003755 Camellia sinensis var. sinensis HOM05D003267 ORTHO05D005630 1.6e-33 149.4 223 40.8
C07p36330 Brassica napus HOM05D004846 ORTHO05D017504 9.7e-31 140.2 250 37.2
BolC7t44149H Brassica oleracea HOM05D004846 ORTHO05D017504 9.7e-31 140.2 250 37.2
BcaC06g33836 Brassica carinata HOM05D004846 ORTHO05D017504 3.1e-29 135.2 248 35.9
MCO12G012 Micromonas commoda HOM05D004846 ORTHO05D005630 1.3e-27 129.8 362 28.5
Ca_14625_v3 Cicer arietinum L. HOM05D004846 ORTHO05D005630 1.2e-25 123.2 73 79.5
SEGI_31417 Sequoiadendron giganteum HOM05D004846 ORTHO05D005630 2.2e-22 112.5 103 57.3
Cre08.g363950 Chlamydomonas reinhardtii HOM05D004846 ORTHO05D005630 3.1e-21 108.6 301 28.9
Dinv00598 Davidia involucrata HOM05D004846 ORTHO05D005630 2.6e-20 105.5 77 61.0
Eucgr.J00244 Eucalyptus grandis HOM05D004846 ORTHO05D005630 1.1e-18 100.1 130 44.6
Cpa.g.c47899 Carica papaya HOM05D004846 ORTHO05D005630 1.4e-16 93.2 58 69.0
HanXRQChr02g0047501 Helianthus annuus HOM05D004846 ORTHO05D005630 5.7e-15 87.8 55 74.5


User provided reference genes

Program Settings