Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g034275 Medicago truncatula HOM05D007214 ORTHO05D008907 1.8e-118 429.5 254 100.0
TPR.G30823 Trifolium pratense HOM05D007214 ORTHO05D008907 7.2e-83 311.2 233 75.5
LjContig00155g0009682 Lotus japonicus HOM05D007214 ORTHO05D008907 5.4e-70 268.5 231 65.4
Lalb_Chr10g0093331 Lupinus albus HOM05D007214 ORTHO05D008907 2.7e-69 266.2 253 60.9
Glyma.04G176300 Glycine max HOM05D007214 ORTHO05D008907 3.2e-67 259.2 240 60.0
Ca_08472_v3 Cicer arietinum L. HOM05D007214 ORTHO05D008907 8.0e-66 254.6 201 71.1
Phvul.008G153000 Phaseolus vulgaris HOM05D007214 ORTHO05D008907 3.4e-64 249.2 236 61.0
arahy.Tifrunner.gnm1.ann1.X6PLX1 Arachis hypogaea HOM05D007214 ORTHO05D008907 8.3e-63 244.6 247 62.8
arahy.Tifrunner.gnm1.ann1.QRE12D Arachis hypogaea HOM05D007214 ORTHO05D008907 7.0e-62 241.5 246 62.2
TPR.G39121 Trifolium pratense HOM05D007214 ORTHO05D008907 1.2e-58 230.7 246 57.7
Glyma.06G189000 Glycine max HOM05D007214 ORTHO05D008907 4.9e-55 218.8 238 55.5
Psat3g038600 Pisum sativum HOM05D007214 ORTHO05D008907 2.5e-51 206.5 156 85.9
TPR.G39060 Trifolium pratense HOM05D007214 ORTHO05D008907 1.6e-42 177.2 144 69.4
CANSAT64G0721 Cannabis sativa HOM05D007214 ORTHO05D008907 4.4e-40 169.1 231 43.3
Ciclev10012639m.g Citrus clementina HOM05D007214 ORTHO05D008907 4.1e-38 162.5 236 42.8
Potri.017G074100 Populus trichocarpa HOM05D007214 ORTHO05D008907 4.1e-38 162.5 236 45.3
FAN09G3859 Fragaria x ananassa HOM05D007214 ORTHO05D008907 1.2e-37 161.0 239 42.3
CiPaw.04G066400 Carya illinoinensis HOM05D007214 ORTHO05D008907 7.8e-37 158.3 226 44.2
Duzib187G0634 Durio zibethinus HOM05D007214 ORTHO05D008907 1.5e-35 154.1 235 49.4
PSO063G2579 Papaver somniferum HOM05D007214 ORTHO05D008907 1.6e-34 150.6 230 43.5
Potri.001G350100 Populus trichocarpa HOM05D007214 ORTHO05D008907 7.6e-32 141.7 230 42.6
Nitab4.5_0001239g0030 Nicotiana tabacum HOM05D007214 ORTHO05D008907 9.2e-30 134.8 268 34.3
AUR62018331 Chenopodium quinoa HOM05D007214 ORTHO05D008907 1.6e-29 134.0 233 41.2
CSS0043780 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 4.6e-29 132.5 234 40.6
FAN14G2712 Fragaria x ananassa HOM05D007214 ORTHO05D008907 3.0e-28 129.8 231 45.9
CARHR292610 Cardamine hirsuta HOM05D007214 ORTHO05D008907 5.1e-28 129.0 229 45.9
AUR62030556 Chenopodium quinoa HOM05D007214 ORTHO05D008907 3.3e-27 126.3 233 35.6
Manes.17G117200 Manihot esculenta HOM05D007214 ORTHO05D008907 3.3e-27 126.3 225 37.8
Peaxi162Scf00129g00734 Petunia axillaris HOM05D007214 ORTHO05D008907 2.1e-26 123.6 216 33.3
FAN02G1556 Fragaria x ananassa HOM05D007214 ORTHO05D008907 2.8e-26 123.2 229 37.6
A06p40570 Brassica napus HOM05D007214 ORTHO05D008907 3.6e-26 122.9 244 41.8
CSS0027558 Camellia sinensis var. sinensis HOM05D007214 ORTHO05D008907 2.4e-25 120.2 234 38.0
Aqoxy3G00863 Aquilegia oxysepala HOM05D007214 ORTHO05D008907 3.1e-25 119.8 241 36.1
Sabra16G0229500 Salix brachista HOM05D007214 ORTHO05D008907 5.2e-25 119.0 236 37.3
Solyc02g087420.3 Solanum lycopersicum HOM05D007214 ORTHO05D008907 5.2e-25 119.0 229 34.1
Sopen02g032170 Solanum pennellii HOM05D007214 ORTHO05D008907 5.2e-25 119.0 229 34.5
RcHm_v2.0_Chr2g0169771 Rosa chinensis HOM05D007214 ORTHO05D008907 1.7e-23 114.0 229 36.2
Gorai.001G258300 Gossypium raimondii HOM05D007214 ORTHO05D008907 3.8e-23 112.8 230 40.9
AT3G28370 Arabidopsis thaliana HOM05D007214 ORTHO05D008907 4.9e-23 112.5 240 42.5
Dinv33685 Davidia involucrata HOM05D007214 ORTHO05D008907 4.9e-23 112.5 240 42.5
TWI12G0421 Tripterygium wilfordii HOM05D007214 ORTHO05D008907 2.4e-22 110.2 229 44.1
SGA_v2.0_scaffold135G34803 Striga asiatica HOM05D007214 ORTHO05D008907 5.4e-22 109.0 229 39.3
Sc11g0006840 Simmondsia chinensis HOM05D007214 ORTHO05D008907 9.3e-22 108.2 120 49.2
A06p40600 Brassica napus HOM05D007214 ORTHO05D008907 1.2e-21 107.8 244 40.2
Nn4g22956 Nelumbo nucifera HOM05D007214 ORTHO05D008907 3.5e-21 106.3 233 40.3
BraA06t26979Z Brassica rapa HOM05D007214 ORTHO05D008907 6.0e-21 105.5 229 41.0
Sp2g17170 Schrenkiella parvula HOM05D007214 ORTHO05D008907 6.0e-21 105.5 225 38.7
Cpa.g.sc14.68 Carica papaya HOM05D007214 ORTHO05D008907 5.1e-20 102.4 129 47.3
Zm00001eb280040 Zea mays HOM05D007214 ORTHO05D008907 5.1e-20 102.4 228 31.6
AL5G17980 Arabidopsis lyrata HOM05D007214 ORTHO05D008907 6.6e-20 102.1 236 39.4
BolC7t44250H Brassica oleracea HOM05D007214 ORTHO05D008907 1.1e-19 101.3 235 38.3
BcaC06g33744 Brassica carinata HOM05D007214 ORTHO05D008907 1.9e-19 100.5 225 39.1
C07p37400 Brassica napus HOM05D007214 ORTHO05D008907 1.9e-19 100.5 229 39.7
Nitab4.5_0002265g0100 Nicotiana tabacum HOM05D007214 ORTHO05D008907 2.5e-19 100.1 268 36.6
Prupe.3G275800 Prunus persica HOM05D007214 ORTHO05D008907 1.3e-18 97.8 229 38.4
HPP92_010494 Vanilla planifolia HOM05D007214 ORTHO05D008907 2.1e-18 97.1 229 34.1
RhsimUnG0169100 Rhododendron simsii HOM05D007214 ORTHO05D008907 2.8e-18 96.7 233 37.3
MD09G1042000 Malus domestica HOM05D007214 ORTHO05D008907 4.8e-18 95.9 229 42.4
FvH4_6g49740 Fragaria vesca HOM05D007214 ORTHO05D008907 8.1e-18 95.1 228 40.8
Lsat_1_v5_gn_4_180400 Lactuca sativa HOM05D007214 ORTHO05D008907 1.1e-17 94.7 211 45.0
Gohir.A07G216951 Gossypium hirsutum HOM05D007214 ORTHO05D008907 1.4e-17 94.4 230 37.0
QL02p079285 Quercus lobata HOM05D007214 ORTHO05D008907 1.4e-17 94.4 242 36.0
DCAR_011179 Daucus carota HOM05D007214 ORTHO05D008907 5.3e-17 92.4 205 29.8
MBI15_g38192_MAGBIO Magnolia biondii HOM05D007214 ORTHO05D008907 2.0e-16 90.5 81 60.5
TAR629G0039 Trochodendron aralioides HOM05D000068 ORTHO05D008907 9.9e-16 88.2 77 57.1
SalBow1G8362 Salvia bowleyana HOM05D007214 ORTHO05D008907 1.3e-15 87.8 233 36.5
Sed0019253 Sechium edule HOM05D007214 ORTHO05D008907 1.3e-15 87.8 238 36.6
CAN.G206.82 Capsicum annuum HOM05D007214 ORTHO05D008907 1.7e-15 87.4 229 33.6
Thecc.04G070100 Theobroma cacao HOM05D007214 ORTHO05D008907 1.7e-15 87.4 194 44.8
Psat3g176600 Pisum sativum HOM05D007214 ORTHO05D008907 4.9e-15 85.9 62 75.8
Ah.12g065280 Amaranthus hybridus HOM05D007214 ORTHO05D008907 3.2e-14 83.2 230 30.4
Eucgr.J02159 Eucalyptus grandis HOM05D007214 ORTHO05D008907 4.2e-14 82.8 76 63.2
Cc07_g02800 Coffea canephora HOM05D007214 ORTHO05D008907 5.4e-14 82.4 231 36.8
ECA232G1410 Erigeron canadensis HOM05D007214 ORTHO05D008907 5.4e-14 82.4 238 34.9
Oeu060587.1 Olea europaea HOM05D007214 ORTHO05D008907 2.7e-13 80.1 123 41.5
Rhsim10G0029100 Rhododendron simsii HOM05D007214 ORTHO05D008907 4.6e-13 79.3 221 30.3
THA.LOC104805424 Tarenaya hassleriana HOM05D007214 ORTHO05D008907 4.6e-13 79.3 233 39.1
Sabra07G0063000 Salix brachista HOM05D007214 ORTHO05D008907 1.3e-12 77.8 126 42.9
Migut.H00870 Erythranthe guttata HOM05D007214 ORTHO05D008907 3.0e-12 76.6 231 36.4
Gohir.D07G223900 Gossypium hirsutum HOM05D007214 ORTHO05D008907 3.0e-12 76.6 194 38.1
Manes.17G117300 Manihot esculenta HOM05D007214 ORTHO05D008907 3.0e-12 76.6 126 37.3
SGA_v2.0_scaffold205G41734 Striga asiatica HOM05D007214 ORTHO05D008907 3.9e-12 76.3 241 36.5
Atru.chr8.2432 Acer truncatum HOM05D007214 ORTHO05D008907 1.5e-11 74.3 123 38.2
Carub.0005s0686 Capsella rubella HOM05D007214 ORTHO05D008907 1.5e-11 74.3 229 32.3
Dinv35004 Davidia involucrata HOM05D007214 ORTHO05D008907 3.3e-11 73.2 207 42.5
Nitab4.5_0001239g0020 Nicotiana tabacum HOM05D005549 ORTHO05D006771 4.3e-11 72.8 222 29.7
TAR629G1667 Trochodendron aralioides HOM05D000068 ORTHO05D000084 9.6e-11 71.6 200 30.0
BcaC06g30923 Brassica carinata HOM05D007214 ORTHO05D008907 1.3e-10 71.2 248 35.5
CDE02G1584 Ceratophyllum demersum HOM05D007214 ORTHO05D008907 2.1e-10 70.5 80 46.2
Aa31LG2G4670 Aethionema arabicum HOM05D007214 ORTHO05D008907 6.2e-10 68.9 231 26.8
Sabra17G0065100 Salix brachista HOM05D007214 ORTHO05D008907 6.2e-10 68.9 97 43.3
MELO3C030968.2 Cucumis melo HOM05D007214 ORTHO05D008907 8.1e-10 68.6 73 46.6
Thhalv10004882m.g Eutrema salsugineum HOM05D007214 ORTHO05D008907 3.1e-09 66.6 233 36.9
Sabra17G0063300 Salix brachista HOM05D007214 ORTHO05D008907 1.5e-08 64.3 84 45.2
FAN05G0748 Fragaria x ananassa HOM05D007214 ORTHO05D008907 7.6e-08 62.0 110 37.3
GSVIVG01032574001 Vitis vinifera HOM05D007214 ORTHO05D008907 1.3e-07 61.2 85 45.9
CsaV3_3G041890 Cucumis sativus L. HOM05D062301 ORTHO05D008907 2.2e-07 60.5 224 28.6
BraA06t26977Z Brassica rapa HOM05D007214 ORTHO05D008907 4.9e-07 59.3 230 36.5
Oeu060589.1 Olea europaea HOM05D007214 ORTHO05D008907 1.1e-06 58.2 81 40.7
Os06g0235900 Oryza sativa ssp. japonica HOM05D007214 ORTHO05D008907 4.2e-06 56.2 86 38.4
PGSC0003DMG400001300 Solanum tuberosum HOM05D007214 ORTHO05D008907 4.2e-06 56.2 79 40.5
unitig_746.g26578 Utricularia gibba HOM05D007214 ORTHO05D008907 7.1e-06 55.5 54 55.6


User provided reference genes

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