Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g026520 Medicago truncatula HOM05D005105 ORTHO05D006244 0.0e+00 1145.6 555 100.0
Psat3g181600 Pisum sativum HOM05D005105 ORTHO05D006244 7.4e-274 946.8 560 81.4
Ca_07318_v3 Cicer arietinum L. HOM05D005105 ORTHO05D006244 6.7e-267 923.7 568 80.3
Lj1g0026609 Lotus japonicus HOM05D005105 ORTHO05D006244 9.1e-264 913.3 555 79.1
Glyma.16G052500 Glycine max HOM05D005105 ORTHO05D006244 4.6e-260 901.0 555 78.2
Phvul.001G090000 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 1.4e-248 862.8 558 76.0
VMungo1383G1917 Vigna mungo HOM05D005105 ORTHO05D006244 2.0e-247 859.0 555 75.0
Lalb_Chr00c40g0412501 Lupinus albus HOM05D005105 ORTHO05D006244 5.9e-247 857.4 563 75.0
arahy.Tifrunner.gnm1.ann1.JMV5LB Arachis hypogaea HOM05D005105 ORTHO05D006244 7.2e-245 850.5 594 70.7
arahy.Tifrunner.gnm1.ann1.B1CDD0 Arachis hypogaea HOM05D005105 ORTHO05D006244 2.0e-242 842.4 571 72.3
Lj2g0026571 Lotus japonicus HOM05D005105 ORTHO05D006244 3.2e-229 798.5 557 70.2
Glyma.16G146100 Glycine max HOM05D005105 ORTHO05D006244 1.0e-227 793.5 559 68.7
VMungo0464G0185 Vigna mungo HOM05D005105 ORTHO05D006244 2.3e-222 775.8 543 69.6
Prupe.3G310100 Prunus persica HOM05D005105 ORTHO05D006244 4.4e-218 761.5 561 66.7
QL02p070577 Quercus lobata HOM05D005105 ORTHO05D006244 4.9e-217 758.1 569 65.7
Thecc.04G041900 Theobroma cacao HOM05D005105 ORTHO05D006244 1.4e-216 756.5 563 64.1
FAN14G3030 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.7e-214 749.6 572 64.3
Haze_14911 Corylus avellana HOM05D005105 ORTHO05D006244 1.1e-213 746.9 545 67.0
FAN09G0463 Fragaria x ananassa HOM05D005105 ORTHO05D006244 1.9e-213 746.1 572 65.2
CANSAT21G1015 Cannabis sativa HOM05D005105 ORTHO05D006244 2.5e-213 745.7 561 65.8
Duzib147G0369 Durio zibethinus HOM05D005105 ORTHO05D006244 5.6e-213 744.6 558 64.9
TAR629G0447 Trochodendron aralioides HOM05D005105 ORTHO05D006244 8.0e-212 740.7 558 64.7
MD09G1007000 Malus domestica HOM05D005105 ORTHO05D006244 1.1e-211 740.3 584 63.4
Cfa007197 Carpinus fangiana HOM05D005105 ORTHO05D006244 1.4e-211 740.0 573 63.7
RcHm_v2.0_Chr2g0176111 Rosa chinensis HOM05D005105 ORTHO05D006244 1.8e-211 739.6 580 63.3
FAN02G1943 Fragaria x ananassa HOM05D005105 ORTHO05D006244 4.0e-211 738.4 572 64.3
FAN05G2765 Fragaria x ananassa HOM05D005105 ORTHO05D006244 8.9e-211 737.3 591 62.6
Ciclev10014761m.g Citrus clementina HOM05D005105 ORTHO05D006244 1.5e-210 736.5 566 64.0
Gorai.006G044700 Gossypium raimondii HOM05D005105 ORTHO05D006244 5.8e-210 734.6 589 61.3
Phvul.004G070700 Phaseolus vulgaris HOM05D005105 ORTHO05D006244 2.2e-209 732.6 563 64.5
Manes.04G087600 Manihot esculenta HOM05D005105 ORTHO05D006244 3.7e-209 731.9 562 64.2
Nn3g16360 Nelumbo nucifera HOM05D005105 ORTHO05D006244 3.2e-208 728.8 556 63.5
Potri.001G325500 Populus trichocarpa HOM05D005105 ORTHO05D006244 2.3e-206 722.6 551 62.8
CiPaw.03G004800 Carya illinoinensis HOM05D005105 ORTHO05D006244 3.9e-206 721.8 501 70.3
Gorai.001G274700 Gossypium raimondii HOM05D005105 ORTHO05D006244 5.0e-206 721.5 563 62.5
Aqoxy5G03244_Aqoxy5G03245 Aquilegia oxysepala HOM05D005105 ORTHO05D006244 8.6e-206 720.7 571 63.4
Gohir.A07G231500 Gossypium hirsutum HOM05D005105 ORTHO05D006244 8.6e-206 720.7 558 63.1
Gohir.D07G238700 Gossypium hirsutum HOM05D005105 ORTHO05D006244 4.3e-205 718.4 563 62.7
Sed0022814 Sechium edule HOM05D005105 ORTHO05D006244 9.5e-205 717.2 562 61.7
TWI34G1796 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.6e-204 716.5 573 62.0
ClCG01G008700 Citrullus lanatus HOM05D005105 ORTHO05D006244 8.1e-204 714.1 564 62.6
CsaV3_5G024330 Cucumis sativus L. HOM05D005105 ORTHO05D006244 1.1e-203 713.8 565 62.5
Oeu020395.1 Olea europaea HOM05D005105 ORTHO05D006244 1.4e-203 713.4 556 62.4
TWI60G0613 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 1.8e-203 713.0 552 63.6
THA.LOC104825638 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.9e-203 710.7 562 61.6
PGR142G1816 Punica granatum HOM05D005105 ORTHO05D006244 2.9e-201 705.7 556 62.6
PSO017G6125 Papaver somniferum HOM05D005105 ORTHO05D006244 4.9e-201 704.9 556 62.1
Solyc02g082210.4 Solanum lycopersicum HOM05D005105 ORTHO05D006244 1.9e-200 703.0 552 61.2
MELO3C025087.2 Cucumis melo HOM05D005105 ORTHO05D006244 4.1e-200 701.8 589 60.3
PSO478G4366 Papaver somniferum HOM05D005105 ORTHO05D006244 7.1e-200 701.0 556 61.7
Sc09g0007730 Simmondsia chinensis HOM05D005105 ORTHO05D006244 7.8e-199 697.6 481 68.8
GSVIVG01033038001 Vitis vinifera HOM05D005105 ORTHO05D006244 1.0e-198 697.2 490 68.2
BcaC06g31032 Brassica carinata HOM05D005105 ORTHO05D006244 1.5e-197 693.3 557 61.0
Cc07_g01060 Coffea canephora HOM05D005105 ORTHO05D006244 1.9e-197 693.0 571 60.6
Sp2g16080 Schrenkiella parvula HOM05D005105 ORTHO05D006244 1.2e-196 690.3 565 60.9
AT3G26950 Arabidopsis thaliana HOM05D005105 ORTHO05D006244 1.6e-196 689.9 553 60.2
Thhalv10003939m.g Eutrema salsugineum HOM05D005105 ORTHO05D006244 2.1e-196 689.5 556 61.3
Carub.0005s0514 Capsella rubella HOM05D005105 ORTHO05D006244 1.1e-195 687.2 562 59.8
Nitab4.5_0011381g0040 Nicotiana tabacum HOM05D005105 ORTHO05D006244 1.1e-195 687.2 548 59.7
Rhsim08G0041000 Rhododendron simsii HOM05D005105 ORTHO05D006244 1.4e-195 686.8 555 62.0
AL5G15980 Arabidopsis lyrata HOM05D005105 ORTHO05D006244 6.8e-195 684.5 553 59.5
Migut.F00035 Erythranthe guttata HOM05D005105 ORTHO05D006244 9.9e-194 680.6 547 58.7
THA.LOC104805319 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 8.4e-193 677.6 564 58.7
C07p36060 Brassica napus HOM05D005105 ORTHO05D006244 1.1e-192 677.2 571 59.2
SalBow4G0131 Salvia bowleyana HOM05D005105 ORTHO05D006244 3.2e-192 675.6 557 60.0
BraA06t27085Z Brassica rapa HOM05D005105 ORTHO05D006244 7.1e-192 674.5 580 59.0
Atru.chr6.2614 Acer truncatum HOM05D005105 ORTHO05D006244 4.6e-191 671.8 532 61.5
HanXRQChr17g0551611 Helianthus annuus HOM05D005105 ORTHO05D006244 3.9e-190 668.7 555 59.1
EL10Ac6g15451 Beta vulgaris HOM05D005105 ORTHO05D006244 5.6e-189 664.8 574 57.1
AUR62003394 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.2e-188 663.7 588 56.3
Lj7A613T64 Lonicera japonica HOM05D005105 ORTHO05D006244 2.1e-188 662.9 595 55.1
BcaC06g33873 Brassica carinata HOM05D005105 ORTHO05D006244 3.1e-187 659.1 555 58.9
A06p41600 Brassica napus HOM05D005105 ORTHO05D006244 1.2e-186 657.1 556 59.5
BolC7t44120H Brassica oleracea HOM05D005105 ORTHO05D006244 1.2e-186 657.1 555 58.9
GSVIVG01008594001 Vitis vinifera HOM05D005105 ORTHO05D006244 3.4e-186 655.6 589 57.7
vmacro18364 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 3.8e-185 652.1 621 54.4
ECA246G4542 Erigeron canadensis HOM05D005105 ORTHO05D006244 1.9e-184 649.8 554 57.4
DCAR_015209 Daucus carota HOM05D005105 ORTHO05D006244 5.4e-184 648.3 591 55.2
Aa31LG2G5630 Aethionema arabicum HOM05D005105 ORTHO05D006244 6.6e-182 641.3 582 55.8
Sabra16G0208000 Salix brachista HOM05D005105 ORTHO05D006244 1.9e-181 639.8 536 58.8
AUR62029433 Chenopodium quinoa HOM05D005105 ORTHO05D006244 1.1e-179 634.0 471 63.9
Lsat_1_v5_gn_0_23961 Lactuca sativa HOM05D005105 ORTHO05D006244 1.1e-179 634.0 551 56.8
ATR0582G106 Amborella trichopoda HOM05D005105 ORTHO05D006244 3.1e-179 632.5 483 62.3
HanXRQChr05g0155591 Helianthus annuus HOM05D005105 ORTHO05D006244 4.0e-179 632.1 489 61.6
Nitab4.5_0011717g0030 Nicotiana tabacum HOM05D005105 ORTHO05D006244 4.0e-179 632.1 547 56.9
vmacro19146 Vaccinium macrocarpon HOM05D005105 ORTHO05D006244 5.8e-178 628.2 624 52.9
Actinidia36228 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.3e-177 627.1 529 60.1
Os11g0507400 Oryza sativa ssp. japonica HOM05D005105 ORTHO05D006244 2.7e-175 619.4 562 56.8
DCAR_007509 Daucus carota HOM05D005105 ORTHO05D006244 4.0e-171 605.5 547 55.2
CDE06G1277 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 6.9e-171 604.7 491 58.9
Duzib264G1310 Durio zibethinus HOM05D005105 ORTHO05D006244 2.6e-170 602.8 559 54.2
Gohir.A09G038300 Gossypium hirsutum HOM05D005105 ORTHO05D006244 2.2e-161 573.2 450 63.1
FvH4_6g53950 Fragaria vesca HOM05D005105 ORTHO05D006244 7.1e-160 568.2 374 71.7
Cpa.g.sc70.110 Carica papaya HOM05D005105 ORTHO05D006244 3.0e-158 562.8 464 60.8
Dinv33309 Davidia involucrata HOM05D005105 ORTHO05D006244 1.9e-152 543.5 396 66.7
Hma1.2p1_0093F.1_g046930 Hydrangea macrophylla HOM05D005105 ORTHO05D006244 3.0e-150 536.2 389 64.5
CARHR148130 Cardamine hirsuta HOM05D005105 ORTHO05D006244 5.7e-149 531.9 386 63.7
SHI04027 Sapria himalayana HOM05D005105 ORTHO05D006244 4.8e-148 528.9 539 52.5
Atru.chr6.2613 Acer truncatum HOM05D005105 ORTHO05D006244 5.3e-147 525.4 347 70.3
Peaxi162Scf00331g00014 Petunia axillaris HOM05D005105 ORTHO05D006244 5.3e-147 525.4 578 48.8
Eucgr.I01623 Eucalyptus grandis HOM05D005105 ORTHO05D006244 2.8e-140 503.1 348 68.4
Glyma.02G065000 Glycine max HOM05D005105 ORTHO05D006244 8.2e-140 501.5 371 67.7
unitig_0.g1913 Utricularia gibba HOM05D005105 ORTHO05D006244 2.0e-138 496.9 436 55.5
MD17G1010700 Malus domestica HOM05D005105 ORTHO05D006244 1.4e-136 490.7 352 67.6
Lsat_1_v5_gn_5_10960 Lactuca sativa HOM05D005105 ORTHO05D006244 2.5e-136 490.0 560 48.2
Prupe.3G297400 Prunus persica HOM05D005105 ORTHO05D006244 1.5e-133 480.7 547 50.1
COL.COLO4_13307 Corchorus olitorius HOM05D005105 ORTHO05D006244 1.0e-129 468.0 475 52.0
SMO180G0002 Selaginella moellendorffii HOM05D005105 ORTHO05D006244 9.4e-128 461.5 446 48.4
CSS0048130 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 1.0e-126 458.0 346 63.3
ECA246G1012 Erigeron canadensis HOM05D005105 ORTHO05D006244 7.2e-120 435.3 411 54.7
CSS0029044 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 9.8e-117 424.9 324 62.7
Pp3c1_35010 Physcomitrium patens HOM05D005105 ORTHO05D006244 2.2e-116 423.7 501 43.1
Lj5A92G44 Lonicera japonica HOM05D005105 ORTHO05D006244 6.3e-116 422.2 323 62.2
HPP92_009891 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.7e-111 406.0 322 60.9
PGSC0003DMG400013660 Solanum tuberosum HOM05D005105 ORTHO05D006244 2.0e-109 400.6 298 61.7
Pp3c21_14570 Physcomitrium patens HOM05D005105 ORTHO05D006244 5.7e-109 399.1 514 42.4
Sopen02g026870 Solanum pennellii HOM05D005105 ORTHO05D006244 1.7e-108 397.5 298 60.7
PSO063G6475 Papaver somniferum HOM05D005105 ORTHO05D006244 8.6e-105 385.2 318 59.1
THA.LOC104813335 Tarenaya hassleriana HOM05D005105 ORTHO05D006244 6.0e-98 362.5 254 66.5
Dinv23187 Davidia involucrata HOM05D005105 ORTHO05D006244 2.3e-86 323.9 246 65.9
Actinidia18328 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.4e-85 319.7 258 62.0
TWI34G0688 Tripterygium wilfordii HOM05D005105 ORTHO05D006244 5.4e-83 312.8 214 68.2
AagrBONN_evm.TU.Sc2ySwM_340.35 Anthoceros agrestis HOM05D005105 ORTHO05D006244 2.0e-77 294.3 483 33.1
HPP92_009881 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.3e-73 281.6 212 62.3
Actinidia18329 Actinidia chinensis HOM05D005105 ORTHO05D006244 7.3e-72 275.8 244 54.5
FAN05G0264 Fragaria x ananassa HOM05D005105 ORTHO05D006244 2.3e-65 254.2 232 54.7
Gohir.D09G039750 Gossypium hirsutum HOM05D005105 ORTHO05D006244 5.4e-59 233.0 161 67.1
CDE05G2066 Ceratophyllum demersum HOM05D005105 ORTHO05D006244 3.9e-57 226.9 154 70.8
HPP92_009897 Vanilla planifolia HOM05D005105 ORTHO05D006244 1.3e-55 221.9 161 63.4
Actinidia25549 Actinidia chinensis HOM05D005105 ORTHO05D006244 1.0e-49 202.2 140 67.1
Atru.chr6.2612 Acer truncatum HOM05D005105 ORTHO05D006244 2.4e-38 164.5 170 54.7
Gohir.D09G039801 Gossypium hirsutum HOM05D005105 ORTHO05D006244 3.4e-37 160.6 177 50.3
CBR_g57654 Chara braunii HOM05D000004 ORTHO05D000002 5.0e-36 156.8 172 41.3
Lj5A92G45 Lonicera japonica HOM05D005105 ORTHO05D006244 4.6e-34 150.2 122 58.2
Actinidia05877 Actinidia chinensis HOM05D000139 ORTHO05D000103 6.1e-34 149.8 202 44.6
SGA_v2.0_scaffold253G45172 Striga asiatica HOM05D005105 ORTHO05D006244 7.9e-34 149.4 160 50.0
Glyma.19G097001 Glycine max HOM05D005105 ORTHO05D006244 5.1e-33 146.7 83 84.3
Glyma.19G097101 Glycine max HOM05D005105 ORTHO05D006244 3.3e-32 144.1 83 79.5
Dinv23186 Davidia involucrata HOM05D005105 ORTHO05D006244 7.4e-32 142.9 174 50.6
Ah.03g148260 Amaranthus hybridus HOM05D005105 ORTHO05D006244 8.2e-31 139.4 155 51.0
Actinidia25550 Actinidia chinensis HOM05D005105 ORTHO05D006244 4.5e-29 133.7 149 42.3
Dinv33310 Davidia involucrata HOM05D005105 ORTHO05D006244 1.2e-26 125.6 136 47.1
HPP92_009880 Vanilla planifolia HOM05D005105 ORTHO05D006244 4.2e-11 73.9 70 47.1
CSS0040735 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 4.7e-10 70.5 119 42.0
SEGI_15377 Sequoiadendron giganteum HOM05D005105 ORTHO05D006244 3.4e-08 64.3 64 48.4
CSS0042485 Camellia sinensis var. sinensis HOM05D005105 ORTHO05D006244 5.3e-06 57.0 105 37.1


User provided reference genes

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