Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g024900 Medicago truncatula HOM05D001532 ORTHO05D001402 1.4e-23 112.1 56 100.0
Medtr7g024873 Medicago truncatula HOM05D001532 ORTHO05D001402 2.5e-20 101.3 51 98.0
Medtr7g024880 Medicago truncatula HOM05D001532 ORTHO05D001402 2.8e-19 97.8 51 94.1
Medtr7g024890 Medicago truncatula HOM05D001532 ORTHO05D001402 2.8e-19 97.8 51 94.1
TPR.G16198 Trifolium pratense HOM05D001532 ORTHO05D001402 4.0e-18 94.0 50 90.0
Ca_07288_v3 Cicer arietinum L. HOM05D001532 ORTHO05D001402 5.8e-17 90.1 51 84.3
TPR.G18295 Trifolium pratense HOM05D001532 ORTHO05D001402 8.3e-16 86.3 47 85.1
Lj1g0019647 Lotus japonicus HOM05D001532 ORTHO05D001402 1.9e-15 85.1 50 86.0
VMungo1383G3242 Vigna mungo HOM05D001532 ORTHO05D001402 2.0e-14 81.6 51 80.4
Lj1g0003287 Lotus japonicus HOM05D001532 ORTHO05D001402 2.7e-14 81.3 51 80.4
Lj1g0015313 Lotus japonicus HOM05D001532 ORTHO05D001402 2.7e-14 81.3 51 80.4
Lj1g0016514 Lotus japonicus HOM05D001532 ORTHO05D001402 2.7e-14 81.3 51 80.4
Phvul.008G012000 Phaseolus vulgaris HOM05D001532 ORTHO05D001402 3.5e-14 80.9 51 80.4
Glyma.18G290300 Glycine max HOM05D001532 ORTHO05D001402 1.0e-13 79.3 51 78.4
Ciclev10018354m.g Citrus clementina HOM05D001532 ORTHO05D001402 1.3e-13 79.0 51 72.5
Potri.014G161200 Populus trichocarpa HOM05D001532 ORTHO05D001402 1.3e-13 79.0 50 76.0
Glyma.02G092300 Glycine max HOM05D001532 ORTHO05D001402 1.7e-13 78.6 51 78.4
Manes.12G060702 Manihot esculenta HOM05D001532 ORTHO05D001402 1.7e-13 78.6 51 74.5
MD17G1109300 Malus domestica HOM05D001532 ORTHO05D001402 2.3e-13 78.2 51 76.5
Glyma.18G290400 Glycine max HOM05D001532 ORTHO05D001402 3.0e-13 77.8 51 76.5
Lsat_1_v5_gn_7_94500 Lactuca sativa HOM05D001532 ORTHO05D001402 3.9e-13 77.4 50 74.0
Lj1P785T44 Lonicera japonica HOM05D001532 ORTHO05D001402 3.9e-13 77.4 51 72.5
Lj1C786T3 Lonicera japonica HOM05D001532 ORTHO05D001402 5.0e-13 77.0 51 72.5
Lj1C786T5 Lonicera japonica HOM05D001532 ORTHO05D001402 5.0e-13 77.0 51 72.5
MD09G1118000 Malus domestica HOM05D001532 ORTHO05D001402 5.0e-13 77.0 51 72.5
Oeu037947.1 Olea europaea HOM05D001532 ORTHO05D001402 5.0e-13 77.0 51 72.5
Ciclev10018069m.g Citrus clementina HOM05D001532 ORTHO05D001402 6.6e-13 76.6 51 70.6
Lj1C786T4 Lonicera japonica HOM05D001532 ORTHO05D001402 6.6e-13 76.6 51 72.5
MD09G1118500 Malus domestica HOM05D001532 ORTHO05D001402 6.6e-13 76.6 51 72.5
EL10Ac9g22783 Beta vulgaris HOM05D001532 ORTHO05D001402 8.6e-13 76.3 51 72.5
Prupe.3G205900 Prunus persica HOM05D001532 ORTHO05D001402 8.6e-13 76.3 51 72.5
COL.COLO4_04216 Corchorus olitorius HOM05D001532 ORTHO05D001402 1.1e-12 75.9 51 70.6
COL.COLO4_31993 Corchorus olitorius HOM05D001532 ORTHO05D001402 1.1e-12 75.9 51 70.6
COL.COLO4_36678 Corchorus olitorius HOM05D001532 ORTHO05D001402 1.1e-12 75.9 51 70.6
Nn1g07376 Nelumbo nucifera HOM05D001532 ORTHO05D001402 1.5e-12 75.5 51 68.6
Nn1g07393 Nelumbo nucifera HOM05D001532 ORTHO05D001402 1.5e-12 75.5 51 70.6
AUR62015099 Chenopodium quinoa HOM05D001532 ORTHO05D001402 1.9e-12 75.1 50 72.0
AUR62017560 Chenopodium quinoa HOM05D001532 ORTHO05D001402 1.9e-12 75.1 50 72.0
Duzib138G0289 Durio zibethinus HOM05D001532 ORTHO05D001402 1.9e-12 75.1 51 70.6
Duzib138G1565 Durio zibethinus HOM05D001532 ORTHO05D001402 1.9e-12 75.1 51 70.6
Glyma.14G051800 Glycine max HOM05D001532 ORTHO05D001402 1.9e-12 75.1 50 76.0
Manes.13G064009 Manihot esculenta HOM05D001532 ORTHO05D001402 1.9e-12 75.1 51 72.5
Manes.13G064036 Manihot esculenta HOM05D001532 ORTHO05D001402 1.9e-12 75.1 51 72.5
Sabra14G0122900 Salix brachista HOM05D001532 ORTHO05D001402 1.9e-12 75.1 50 76.0
TAR626G0528 Trochodendron aralioides HOM05D001532 ORTHO05D001402 1.9e-12 75.1 51 70.6
Dinv07823 Davidia involucrata HOM05D001532 ORTHO05D001402 2.5e-12 74.7 51 68.6
Dinv07826 Davidia involucrata HOM05D001532 ORTHO05D001402 2.5e-12 74.7 51 68.6
Dinv08699 Davidia involucrata HOM05D001532 ORTHO05D001402 2.5e-12 74.7 51 68.6
Duzib133G0035 Durio zibethinus HOM05D001532 ORTHO05D001402 2.5e-12 74.7 51 68.6
Duzib138G1181 Durio zibethinus HOM05D001532 ORTHO05D001402 2.5e-12 74.7 51 68.6
EL10Ac9g22781 Beta vulgaris HOM05D001532 ORTHO05D001402 3.3e-12 74.3 51 70.6
Cfa014284 Carpinus fangiana HOM05D001532 ORTHO05D001402 3.3e-12 74.3 51 70.6
Haze_12732 Corylus avellana HOM05D001532 ORTHO05D001402 3.3e-12 74.3 51 70.6
HanXRQChr04g0126801 Helianthus annuus HOM05D001532 ORTHO05D001402 3.3e-12 74.3 51 70.6
Manes.13G064300 Manihot esculenta HOM05D001532 ORTHO05D001402 3.3e-12 74.3 51 72.5
Os09g0483500 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 3.3e-12 74.3 51 74.5
CDE07G0932 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 4.3e-12 73.9 51 66.7
CsaV3_7G002990 Cucumis sativus L. HOM05D001532 ORTHO05D001402 4.3e-12 73.9 51 70.6
Glyma.02G265900 Glycine max HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 74.0
Nn1g03319 Nelumbo nucifera HOM05D001532 ORTHO05D001402 4.3e-12 73.9 51 70.6
Potri.002G218500 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
Potri.002G218700 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
Potri.002G218725 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
Potri.002G218750 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
Potri.002G218775 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
Potri.002G218800 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
Potri.002G219000 Populus trichocarpa HOM05D001532 ORTHO05D001402 4.3e-12 73.9 50 72.0
CDE04G1770 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 5.6e-12 73.6 51 66.7
CDE04G2103 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 5.6e-12 73.6 51 66.7
Gohir.A07G171500 Gossypium hirsutum HOM05D001532 ORTHO05D001402 5.6e-12 73.6 51 68.6
HanXRQChr16g0508281 Helianthus annuus HOM05D001532 ORTHO05D001402 5.6e-12 73.6 51 70.6
QL08p029810 Quercus lobata HOM05D001532 ORTHO05D001402 5.6e-12 73.6 51 70.6
Sed0028193 Sechium edule HOM05D001532 ORTHO05D001402 5.6e-12 73.6 50 72.0
Actinidia10786 Actinidia chinensis HOM05D001532 ORTHO05D001402 7.3e-12 73.2 51 66.7
Nn1g07375 Nelumbo nucifera HOM05D001532 ORTHO05D001402 7.3e-12 73.2 51 68.6
arahy.Tifrunner.gnm1.ann1.A3V5PU Arachis hypogaea HOM05D001532 ORTHO05D001402 9.5e-12 72.8 50 68.0
CDE06G1785 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 9.5e-12 72.8 51 68.6
ClCG02G002450 Citrullus lanatus HOM05D001532 ORTHO05D001402 9.5e-12 72.8 51 68.6
CsaV3_7G002970 Cucumis sativus L. HOM05D001532 ORTHO05D001402 9.5e-12 72.8 51 68.6
Manes.13G063982 Manihot esculenta HOM05D001532 ORTHO05D001402 9.5e-12 72.8 51 68.6
Os09g0482840 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 9.5e-12 72.8 51 70.6
GSVIVG01030393001 Vitis vinifera HOM05D001532 ORTHO05D001402 9.5e-12 72.8 51 66.7
Gohir.D07G174200 Gossypium hirsutum HOM05D001532 ORTHO05D001402 1.2e-11 72.4 51 68.6
Gorai.001G194800 Gossypium raimondii HOM05D001532 ORTHO05D001402 1.2e-11 72.4 51 68.6
Lalb_Chr10g0091681 Lupinus albus HOM05D001532 ORTHO05D001402 1.2e-11 72.4 50 70.0
Nn1g07373 Nelumbo nucifera HOM05D001532 ORTHO05D001402 1.2e-11 72.4 51 66.7
Nn1g07374 Nelumbo nucifera HOM05D001532 ORTHO05D001402 1.2e-11 72.4 51 66.7
ECA236G1656 Erigeron canadensis HOM05D001532 ORTHO05D001402 1.6e-11 72.0 51 64.7
MBI03_g41973_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 1.6e-11 72.0 51 70.6
Potri.002G218201 Populus trichocarpa HOM05D001532 ORTHO05D001402 1.6e-11 72.0 50 70.0
Potri.002G218300 Populus trichocarpa HOM05D001532 ORTHO05D001402 1.6e-11 72.0 50 70.0
Sabra02G0170700 Salix brachista HOM05D001532 ORTHO05D001402 1.6e-11 72.0 50 70.0
Thecc.01G186900 Theobroma cacao HOM05D001532 ORTHO05D001402 1.6e-11 72.0 51 68.6
arahy.Tifrunner.gnm1.ann1.XIVB9A Arachis hypogaea HOM05D001532 ORTHO05D001402 2.1e-11 71.6 50 68.0
Cfa014285 Carpinus fangiana HOM05D001532 ORTHO05D001402 2.1e-11 71.6 51 66.7
CiPaw.03G275700 Carya illinoinensis HOM05D001532 ORTHO05D001402 2.1e-11 71.6 50 70.0
MELO3C018876.2 Cucumis melo HOM05D001532 ORTHO05D001402 2.1e-11 71.6 51 66.7
MBI03_g34699_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 2.1e-11 71.6 51 68.6
Nn1g00079 Nelumbo nucifera HOM05D001532 ORTHO05D001402 2.1e-11 71.6 51 66.7
Nn1g07377 Nelumbo nucifera HOM05D001532 ORTHO05D001402 2.1e-11 71.6 51 68.6
CANSAT64G1987 Cannabis sativa HOM05D001532 ORTHO05D001402 2.8e-11 71.2 51 66.7
arahy.Tifrunner.gnm1.ann1.029YZL Arachis hypogaea HOM05D001532 ORTHO05D001402 3.6e-11 70.9 50 66.0
arahy.Tifrunner.gnm1.ann1.42MJWH Arachis hypogaea HOM05D001532 ORTHO05D001402 3.6e-11 70.9 50 66.0
Cpa.g.sc132.60 Carica papaya HOM05D001532 ORTHO05D001402 3.6e-11 70.9 51 66.7
Sabra02G0170600 Salix brachista HOM05D001532 ORTHO05D001402 3.6e-11 70.9 50 68.0
Thecc.01G186800 Theobroma cacao HOM05D001532 ORTHO05D001402 3.6e-11 70.9 51 66.7
CiPaw.03G104000 Carya illinoinensis HOM05D001532 ORTHO05D001402 4.7e-11 70.5 50 70.0
CiPaw.03G275400 Carya illinoinensis HOM05D001532 ORTHO05D001402 4.7e-11 70.5 50 70.0
MELO3C018879.2 Cucumis melo HOM05D001532 ORTHO05D001402 4.7e-11 70.5 48 70.8
CiPaw.03G275200 Carya illinoinensis HOM05D001532 ORTHO05D001402 6.2e-11 70.1 50 68.0
CsaV3_6G037530 Cucumis sativus L. HOM05D001532 ORTHO05D001402 6.2e-11 70.1 51 64.7
Eucgr.K00715 Eucalyptus grandis HOM05D001532 ORTHO05D001402 6.2e-11 70.1 50 62.0
Gorai.001G194900 Gossypium raimondii HOM05D001532 ORTHO05D001402 6.2e-11 70.1 51 64.7
HanXRQChr12g0366701 Helianthus annuus HOM05D001532 ORTHO05D001402 6.2e-11 70.1 50 68.0
HanXRQChr12g0366711 Helianthus annuus HOM05D001532 ORTHO05D001402 6.2e-11 70.1 50 68.0
Nn1g03318 Nelumbo nucifera HOM05D001532 ORTHO05D001402 6.2e-11 70.1 51 64.7
VMungo0647G1876 Vigna mungo HOM05D001532 ORTHO05D001402 8.0e-11 69.7 50 70.0
Ciclev10017119m.g Citrus clementina HOM05D001532 ORTHO05D001402 1.1e-10 69.3 50 66.0
Gohir.D07G174300 Gossypium hirsutum HOM05D001532 ORTHO05D001402 1.1e-10 69.3 51 64.7
MELO3C014359.2 Cucumis melo HOM05D001532 ORTHO05D001402 1.4e-10 68.9 51 64.7
Eucgr.K00718 Eucalyptus grandis HOM05D001532 ORTHO05D001402 1.4e-10 68.9 50 62.0
Os09g0483100 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 1.4e-10 68.9 51 68.6
CDE04G3231 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 1.8e-10 68.6 51 64.7
Eucgr.K00714 Eucalyptus grandis HOM05D001532 ORTHO05D001402 1.8e-10 68.6 50 62.0
Eucgr.K00719 Eucalyptus grandis HOM05D001532 ORTHO05D001402 1.8e-10 68.6 50 62.0
PGR142G3159 Punica granatum HOM05D001532 ORTHO05D001402 2.3e-10 68.2 51 64.7
Ah.14g083000 Amaranthus hybridus HOM05D001532 ORTHO05D001402 3.1e-10 67.8 51 64.7
DCAR_021124 Daucus carota HOM05D001532 ORTHO05D001402 3.1e-10 67.8 51 64.7
Oeu054520.1 Olea europaea HOM05D001532 ORTHO05D001402 3.1e-10 67.8 53 62.3
arahy.Tifrunner.gnm1.ann1.Y7X7J4 Arachis hypogaea HOM05D001532 ORTHO05D001402 4.0e-10 67.4 50 64.0
ClCG02G002440 Citrullus lanatus HOM05D001532 ORTHO05D001402 4.0e-10 67.4 51 62.7
MELO3C018877.2 Cucumis melo HOM05D001532 ORTHO05D001402 4.0e-10 67.4 51 62.7
Os09g0483300 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 4.0e-10 67.4 51 66.7
Sed0011708 Sechium edule HOM05D001532 ORTHO05D001402 4.0e-10 67.4 50 60.0
Sed0013410 Sechium edule HOM05D001532 ORTHO05D001402 4.0e-10 67.4 51 60.8
ClCG00G004140 Citrullus lanatus HOM05D001532 ORTHO05D001402 5.2e-10 67.0 51 62.7
ClCG02G002430 Citrullus lanatus HOM05D001532 ORTHO05D001402 5.2e-10 67.0 51 62.7
Sopen03g005500 Solanum pennellii HOM05D001532 ORTHO05D001402 5.2e-10 67.0 50 62.0
PGSC0003DMG400005051 Solanum tuberosum HOM05D001532 ORTHO05D001402 5.2e-10 67.0 50 62.0
Zm00001eb034300 Zea mays HOM05D001532 ORTHO05D001402 5.2e-10 67.0 51 64.7
THA.LOC104801017 Tarenaya hassleriana HOM05D001532 ORTHO05D001402 6.8e-10 66.6 51 64.7
CDE04G1793 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 8.9e-10 66.2 51 62.7
Nn1g07394 Nelumbo nucifera HOM05D001532 ORTHO05D001402 8.9e-10 66.2 51 60.8
Zm00001eb034620 Zea mays HOM05D001532 ORTHO05D001402 8.9e-10 66.2 51 64.7
Solyc03g031630.3 Solanum lycopersicum HOM05D001532 ORTHO05D001402 1.2e-09 65.9 50 62.0
Zm00001eb034390 Zea mays HOM05D001532 ORTHO05D001402 1.2e-09 65.9 51 64.7
Zm00001eb034590 Zea mays HOM05D001532 ORTHO05D001402 1.2e-09 65.9 51 64.7
Zm00001eb034330 Zea mays HOM05D001532 ORTHO05D001402 2.6e-09 64.7 51 62.7
Zm00001eb034490 Zea mays HOM05D001532 ORTHO05D001402 2.6e-09 64.7 51 62.7
CDE06G0885 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 3.4e-09 64.3 51 58.8
Zm00001eb034280 Zea mays HOM05D001532 ORTHO05D001402 3.4e-09 64.3 51 62.7
CDE04G2632 Ceratophyllum demersum HOM05D001532 ORTHO05D001402 4.4e-09 63.9 50 60.0
CAN.G404.64 Capsicum annuum HOM05D001532 ORTHO05D001402 7.5e-09 63.2 50 58.0
Os09g0482800 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 1.7e-08 62.0 51 60.8
HPP92_017847 Vanilla planifolia HOM05D001532 ORTHO05D001402 2.2e-08 61.6 51 60.8
HPP92_017848 Vanilla planifolia HOM05D001532 ORTHO05D001402 2.2e-08 61.6 51 60.8
HPP92_017849 Vanilla planifolia HOM05D001532 ORTHO05D001402 2.2e-08 61.6 51 60.8
HPP92_017845 Vanilla planifolia HOM05D001532 ORTHO05D001402 3.7e-08 60.8 51 60.8
Os08g0502600 Oryza sativa ssp. japonica HOM05D001532 ORTHO05D001402 4.9e-08 60.5 49 57.1
CANSAT25G0944 Cannabis sativa HOM05D001532 ORTHO05D001402 1.9e-07 58.5 51 51.0
PSO339G4993 Papaver somniferum HOM05D001532 ORTHO05D001402 3.2e-07 57.8 51 54.9
PSO801G0571 Papaver somniferum HOM05D001532 ORTHO05D001402 3.2e-07 57.8 51 54.9
CANSAT56G3100 Cannabis sativa HOM05D001532 ORTHO05D001402 9.2e-07 56.2 51 51.0
DCAR_029589 Daucus carota HOM05D001532 ORTHO05D001402 2.1e-06 55.1 45 57.8
COL.COLO4_29440 Corchorus olitorius HOM05D001532 ORTHO05D001402 2.7e-06 54.7 51 51.0
Aa31LG1G25920 Aethionema arabicum HOM05D001343 ORTHO05D002008 3.5e-06 54.3 51 49.0
AT2G44310 Arabidopsis thaliana HOM05D001532 ORTHO05D001402 4.6e-06 53.9 51 49.0
C03p29520 Brassica napus HOM05D001532 ORTHO05D001402 4.6e-06 53.9 51 47.1
ECA236G3146 Erigeron canadensis HOM05D001532 ORTHO05D001402 4.6e-06 53.9 51 52.9
A03p24750 Brassica napus HOM05D001532 ORTHO05D001402 6.0e-06 53.5 51 47.1
Carub.0004s2690 Capsella rubella HOM05D001532 ORTHO05D001402 6.0e-06 53.5 51 47.1
ATR0598G207 Amborella trichopoda HOM05D001532 ORTHO05D001402 7.8e-06 53.1 45 57.8
MBI13_g42369_MAGBIO Magnolia biondii HOM05D001532 ORTHO05D001402 7.8e-06 53.1 51 52.9


User provided reference genes

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