Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g024560 Medicago truncatula HOM05D007136 ORTHO05D008986 5.3e-173 610.9 308 100.0
Ca_07254_v3 Cicer arietinum L. HOM05D007136 ORTHO05D008986 4.0e-152 541.6 308 88.0
Psat3g181320 Pisum sativum HOM05D007136 ORTHO05D008986 2.0e-151 539.3 308 87.3
TPR.G15525 Trifolium pratense HOM05D007136 ORTHO05D008986 7.5e-143 510.8 308 83.4
Glyma.18G289500 Glycine max HOM05D007136 ORTHO05D008986 4.0e-136 488.4 309 77.7
VMungo1383G1564 Vigna mungo HOM05D007136 ORTHO05D008986 3.7e-134 481.9 308 76.9
Lj1g0011729 Lotus japonicus HOM05D007136 ORTHO05D008986 4.1e-133 478.4 306 77.5
Phvul.008G012700 Phaseolus vulgaris HOM05D007136 ORTHO05D008986 4.1e-133 478.4 308 76.6
Lalb_Chr10g0091721 Lupinus albus HOM05D007136 ORTHO05D008986 3.6e-129 465.3 308 73.4
arahy.Tifrunner.gnm1.ann1.IQ4HGL Arachis hypogaea HOM05D007136 ORTHO05D008986 2.3e-128 462.6 309 74.1
arahy.Tifrunner.gnm1.ann1.RSMT0C Arachis hypogaea HOM05D007136 ORTHO05D008986 2.3e-128 462.6 309 74.1
Thecc.10G044100 Theobroma cacao HOM05D007136 ORTHO05D008986 1.3e-115 420.2 306 66.3
Atru.chr12.462 Acer truncatum HOM05D007136 ORTHO05D008986 3.0e-115 419.1 306 65.0
Haze_17049 Corylus avellana HOM05D007136 ORTHO05D008986 5.1e-115 418.3 320 66.6
Atru.chr12.484 Acer truncatum HOM05D007136 ORTHO05D008986 4.3e-114 415.2 306 64.7
RcHm_v2.0_Chr1g0366511 Rosa chinensis HOM05D007136 ORTHO05D008986 5.6e-114 414.8 307 65.8
CiPaw.01G285300 Carya illinoinensis HOM05D007136 ORTHO05D008986 9.6e-114 414.1 309 67.0
CANSAT56G3368 Cannabis sativa HOM05D007136 ORTHO05D008986 3.6e-113 412.1 309 65.7
TAR633G2090 Trochodendron aralioides HOM05D000330 ORTHO05D008986 4.7e-113 411.8 309 64.7
TWI15G0021 Tripterygium wilfordii HOM05D007136 ORTHO05D008986 5.2e-112 408.3 309 63.4
Nn2g10391 Nelumbo nucifera HOM05D007136 ORTHO05D008986 1.5e-111 406.8 309 64.4
GSVIVG01016535001 Vitis vinifera HOM05D007136 ORTHO05D008986 2.0e-111 406.4 307 63.2
Hma1.2p1_0683F.1_g202870 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 5.8e-111 404.8 307 64.5
Ciclev10032197m.g Citrus clementina HOM05D007136 ORTHO05D008986 2.2e-110 402.9 307 63.8
Rhsim09G0165500 Rhododendron simsii HOM05D007136 ORTHO05D008986 6.4e-110 401.4 309 62.8
MD07G1196400 Malus domestica HOM05D007136 ORTHO05D008986 2.4e-109 399.4 307 63.5
Dinv26003 Davidia involucrata HOM05D007136 ORTHO05D008986 3.2e-109 399.1 309 63.1
vmacro10240 Vaccinium macrocarpon HOM05D007136 ORTHO05D008986 9.3e-109 397.5 307 62.9
Prupe.2G233400 Prunus persica HOM05D007136 ORTHO05D008986 1.6e-108 396.7 307 63.5
FvH4_7g22120 Fragaria vesca HOM05D007136 ORTHO05D008986 2.7e-108 396.0 307 62.5
FAN01G1261 Fragaria x ananassa HOM05D007136 ORTHO05D008986 6.0e-108 394.8 307 62.2
FAN06G2040 Fragaria x ananassa HOM05D007136 ORTHO05D008986 7.8e-108 394.4 307 62.2
FAN01G1850 Fragaria x ananassa HOM05D007136 ORTHO05D008986 1.0e-107 394.0 307 62.2
Gohir.D10G226000 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.3e-107 393.7 306 61.4
Gohir.A10G217300 Gossypium hirsutum HOM05D007136 ORTHO05D008986 1.7e-107 393.3 306 61.4
Gorai.011G257200 Gossypium raimondii HOM05D007136 ORTHO05D008986 1.7e-107 393.3 306 61.4
FAN06G2061 Fragaria x ananassa HOM05D007136 ORTHO05D008986 6.6e-107 391.3 307 61.9
Cc02_g07990 Coffea canephora HOM05D007136 ORTHO05D008986 8.7e-107 391.0 307 60.3
Potri.010G205900 Populus trichocarpa HOM05D007136 ORTHO05D008986 1.3e-105 387.1 309 62.1
PGR044G0021 Punica granatum HOM05D007136 ORTHO05D008986 1.4e-104 383.6 309 62.5
Migut.F01500 Erythranthe guttata HOM05D007136 ORTHO05D008986 1.5e-103 380.2 307 59.3
FAN03G0232 Fragaria x ananassa HOM05D007136 ORTHO05D008986 2.6e-103 379.4 307 61.2
Sopen06g013560 Solanum pennellii HOM05D007136 ORTHO05D008986 1.7e-102 376.7 307 58.6
MSTRG.8246 Avicennia marina HOM05D007136 ORTHO05D008986 2.2e-102 376.3 307 59.3
DCAR_027635 Daucus carota HOM05D007136 ORTHO05D008986 4.2e-101 372.1 307 60.3
AUR62038352 Chenopodium quinoa HOM05D007136 ORTHO05D008986 7.1e-101 371.3 309 58.6
QL08p059192 Quercus lobata HOM05D007136 ORTHO05D008986 2.7e-100 369.4 429 48.7
Cfa001492 Carpinus fangiana HOM05D007136 ORTHO05D008986 3.5e-100 369.0 273 66.7
Peaxi162Scf00658g00728 Petunia axillaris HOM05D007136 ORTHO05D008986 3.5e-100 369.0 305 59.0
Sed0006263 Sechium edule HOM05D007136 ORTHO05D008986 7.9e-100 367.9 309 58.9
Actinidia29223 Actinidia chinensis HOM05D007136 ORTHO05D008986 1.0e-99 367.5 308 57.8
Nitab4.5_0000931g0010 Nicotiana tabacum HOM05D007136 ORTHO05D008986 3.0e-99 365.9 307 57.7
ClCG09G019950 Citrullus lanatus HOM05D007136 ORTHO05D008986 5.1e-99 365.2 309 59.5
COL.COLO4_14997 Corchorus olitorius HOM05D007136 ORTHO05D008986 5.1e-99 365.2 350 55.1
Lsat_1_v5_gn_2_119701 Lactuca sativa HOM05D007136 ORTHO05D008986 5.1e-99 365.2 308 58.8
ECA238G4577 Erigeron canadensis HOM05D007136 ORTHO05D008986 8.7e-99 364.4 311 57.6
Aqoxy2G02097 Aquilegia oxysepala HOM05D007136 ORTHO05D008986 2.5e-98 362.8 307 57.3
Sabra10G0159100 Salix brachista HOM05D007136 ORTHO05D008986 2.8e-97 359.4 355 53.8
SalBow6G2062 Salvia bowleyana HOM05D007136 ORTHO05D008986 2.8e-97 359.4 307 55.7
HanXRQChr14g0458151 Helianthus annuus HOM05D007136 ORTHO05D008986 1.1e-96 357.5 308 56.8
Ah.16g107010 Amaranthus hybridus HOM05D007136 ORTHO05D008986 4.0e-96 355.5 309 56.6
SGA_v2.0_scaffold86G26943 Striga asiatica HOM05D007136 ORTHO05D008986 2.0e-95 353.2 307 57.3
CsaV3_5G026510 Cucumis sativus L. HOM05D007136 ORTHO05D008986 2.6e-95 352.8 309 57.9
Hund20032 Selenicereus undatus HOM05D007136 ORTHO05D008986 1.4e-93 347.1 294 57.8
MELO3C021650.2 Cucumis melo HOM05D007136 ORTHO05D008986 6.0e-92 341.7 309 55.7
Nitab4.5_0000065g0080 Nicotiana tabacum HOM05D007136 ORTHO05D008986 6.0e-92 341.7 306 55.6
ATR0559G284 Amborella trichopoda HOM05D007136 ORTHO05D008986 5.1e-91 338.6 294 55.4
EL10Ac2g03388 Beta vulgaris HOM05D007136 ORTHO05D008986 1.1e-90 337.4 360 50.8
PSO339G3352 Papaver somniferum HOM05D007136 ORTHO05D008986 2.5e-85 319.7 301 54.5
THA.LOC104799346 Tarenaya hassleriana HOM05D007136 ORTHO05D008986 7.1e-85 318.2 308 51.3
PSO151G0201 Papaver somniferum HOM05D007136 ORTHO05D008986 1.2e-84 317.4 302 53.0
Aa31LG5G14590 Aethionema arabicum HOM05D007136 ORTHO05D008986 1.0e-83 314.3 315 49.8
MBI05_g22899_MAGBIO Magnolia biondii HOM05D007136 ORTHO05D008986 1.8e-83 313.5 297 54.2
HPP92_001682 Vanilla planifolia HOM05D007136 ORTHO05D008986 5.1e-83 312.0 308 51.6
C05p63040 Brassica napus HOM05D007136 ORTHO05D008986 1.5e-82 310.5 308 50.0
BolC5t34957H Brassica oleracea HOM05D007136 ORTHO05D008986 1.5e-82 310.5 308 50.0
Eucgr.J00020 Eucalyptus grandis HOM05D007136 ORTHO05D008986 1.9e-82 310.1 243 61.3
BraA05t23073Z Brassica rapa HOM05D007136 ORTHO05D008986 4.3e-82 308.9 308 50.0
Sp3g03000 Schrenkiella parvula HOM05D007136 ORTHO05D008986 4.8e-81 305.4 308 50.0
Manes.07G114900 Manihot esculenta HOM05D007136 ORTHO05D008986 9.0e-80 301.2 237 62.4
Carub.0003s0327 Capsella rubella HOM05D007136 ORTHO05D008986 2.0e-79 300.1 308 48.1
CARHR078150 Cardamine hirsuta HOM05D007136 ORTHO05D008986 2.6e-79 299.7 308 47.1
CDE09G1315 Ceratophyllum demersum HOM05D007136 ORTHO05D008986 1.0e-78 297.7 301 50.2
AL3G13930 Arabidopsis lyrata HOM05D007136 ORTHO05D008986 2.9e-78 296.2 308 48.1
Os03g0276600 Oryza sativa ssp. japonica HOM05D007136 ORTHO05D008986 6.5e-78 295.0 308 47.7
A05p43340 Brassica napus HOM05D007136 ORTHO05D008986 9.4e-77 291.2 293 49.1
Thhalv10021212m.g Eutrema salsugineum HOM05D007136 ORTHO05D008986 9.4e-77 291.2 308 47.7
Hma1.2p1_0683F.1_g202860 Hydrangea macrophylla HOM05D007136 ORTHO05D008986 9.4e-77 291.2 250 59.2
BcaC05g30543 Brassica carinata HOM05D007136 ORTHO05D008986 1.2e-76 290.8 291 50.5
Cpa.g.sc1.397 Carica papaya HOM05D007136 ORTHO05D008986 6.7e-75 285.0 243 60.1
unitig_736.g22315 Utricularia gibba HOM05D007136 ORTHO05D008986 1.5e-74 283.9 324 48.5
CSS0027543 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.4e-72 276.6 268 54.5
CSS0005502 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 1.2e-71 274.2 268 53.7
Sc09g0007080 Simmondsia chinensis HOM05D007136 ORTHO05D008986 2.0e-71 273.5 221 58.4
Glyma.02G092900 Glycine max HOM05D007136 ORTHO05D008986 2.5e-69 266.5 309 51.1
SEGI_31981 Sequoiadendron giganteum HOM05D007136 ORTHO05D008986 1.2e-68 264.2 292 44.9
Solyc06g043070.4 Solanum lycopersicum HOM05D007136 ORTHO05D008986 1.8e-67 260.4 238 53.8
Zm00001eb012480 Zea mays HOM05D007136 ORTHO05D008986 1.4e-64 250.8 303 44.2
Lj4C909G7 Lonicera japonica HOM05D007136 ORTHO05D008986 2.4e-64 250.0 219 59.4
Duzib106G1934 Durio zibethinus HOM05D007136 ORTHO05D008986 3.9e-59 232.6 177 63.8
Dinv31448 Davidia involucrata HOM05D007136 ORTHO05D008986 2.6e-55 219.9 231 49.4
AT3G04020 Arabidopsis thaliana HOM05D007136 ORTHO05D008986 5.0e-54 215.7 242 45.9
Pp3c12_11030 Physcomitrium patens HOM05D007136 ORTHO05D008986 1.2e-47 194.5 297 36.4
AUR62041862 Chenopodium quinoa HOM05D007136 ORTHO05D008986 2.7e-39 166.8 114 64.0
Mapoly0002s0030 Marchantia polymorpha HOM05D007136 ORTHO05D008986 2.0e-34 150.6 277 31.4
AUR62041861 Chenopodium quinoa HOM05D007136 ORTHO05D008986 1.0e-27 128.3 113 56.6
Solyc06g043060.1 Solanum lycopersicum HOM05D007136 ORTHO05D008986 2.0e-23 114.0 67 71.6
CSS0002221 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 2.5e-21 107.1 67 70.1
FAN10G3057 Fragaria x ananassa HOM05D007136 ORTHO05D025577 3.3e-21 106.7 67 68.7
CSS0010171 Camellia sinensis var. sinensis HOM05D007136 ORTHO05D008986 9.5e-21 105.1 67 68.7
CAN.G1401.1 Capsicum annuum HOM05D007136 ORTHO05D008986 9.5e-21 105.1 63 69.8
SHI07863 Sapria himalayana HOM05D007136 ORTHO05D008986 1.3e-09 68.2 63 49.2


User provided reference genes

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