Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g023540 Medicago truncatula HOM05D004260 ORTHO05D005008 2.9e-95 352.1 198 100.0
Psat1g140800 Pisum sativum HOM05D004260 ORTHO05D005008 4.0e-89 331.6 198 86.4
TPR.G28376 Trifolium pratense HOM05D004260 ORTHO05D005008 3.4e-88 328.6 198 85.4
Glyma.15G170200 Glycine max HOM05D004260 ORTHO05D005008 1.3e-84 316.6 198 81.8
Lj6g0007381 Lotus japonicus HOM05D004260 ORTHO05D005008 4.3e-83 311.6 198 79.8
Lalb_Chr08g0232171 Lupinus albus HOM05D004260 ORTHO05D005008 3.6e-82 308.5 198 77.8
Glyma.09G063400 Glycine max HOM05D004260 ORTHO05D005008 8.1e-82 307.4 198 81.3
Lalb_Chr23g0276591 Lupinus albus HOM05D004260 ORTHO05D005008 3.1e-81 305.4 198 75.8
Manes.03G034400 Manihot esculenta HOM05D004260 ORTHO05D005008 5.3e-81 304.7 198 76.8
CsaV3_1G040520 Cucumis sativus L. HOM05D004260 ORTHO05D005008 4.4e-80 301.6 198 77.8
ClCG03G015530 Citrullus lanatus HOM05D004260 ORTHO05D005008 5.8e-80 301.2 198 77.3
Manes.16G101400 Manihot esculenta HOM05D004260 ORTHO05D005008 9.9e-80 300.4 198 75.8
MD15G1208100 Malus domestica HOM05D004260 ORTHO05D005008 2.2e-79 299.3 198 77.3
CiPaw.03G214700 Carya illinoinensis HOM05D004260 ORTHO05D005008 2.9e-79 298.9 198 76.3
MD02G1080600 Malus domestica HOM05D004260 ORTHO05D005008 3.8e-79 298.5 198 77.3
Gohir.A07G011700 Gossypium hirsutum HOM05D004260 ORTHO05D005008 6.4e-79 297.7 198 77.3
GSVIVG01015195001 Vitis vinifera HOM05D004260 ORTHO05D005008 8.4e-79 297.4 199 75.4
Ciclev10009610m.g Citrus clementina HOM05D004260 ORTHO05D005008 1.1e-78 297.0 198 76.8
vmacro17245 Vaccinium macrocarpon HOM05D004260 ORTHO05D005008 1.4e-78 296.6 198 77.3
Cfa003078 Carpinus fangiana HOM05D004260 ORTHO05D005008 1.9e-78 296.2 198 75.3
Actinidia39712 Actinidia chinensis HOM05D004260 ORTHO05D005008 2.4e-78 295.8 198 76.3
Sed0021939 Sechium edule HOM05D004260 ORTHO05D005008 2.4e-78 295.8 198 75.8
CANSAT56G0029 Cannabis sativa HOM05D004260 ORTHO05D005008 3.2e-78 295.4 198 75.8
Gohir.D07G011500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 3.2e-78 295.4 198 76.8
Prupe.7G208600 Prunus persica HOM05D004260 ORTHO05D005008 7.1e-78 294.3 198 75.8
Rhsim05G0018800 Rhododendron simsii HOM05D004260 ORTHO05D005008 7.1e-78 294.3 198 76.3
Thecc.09G088200 Theobroma cacao HOM05D004260 ORTHO05D005008 7.1e-78 294.3 198 83.8
Atru.chr12.1595 Acer truncatum HOM05D004260 ORTHO05D005008 2.1e-77 292.7 198 75.3
Atru.chr7.1605 Acer truncatum HOM05D004260 ORTHO05D005008 2.1e-77 292.7 198 75.3
Sopen07g018820 Solanum pennellii HOM05D004260 ORTHO05D005008 2.1e-77 292.7 198 75.3
QL02p062467 Quercus lobata HOM05D004260 ORTHO05D005008 2.7e-77 292.4 197 74.6
Ca_02161_v3 Cicer arietinum L. HOM05D004260 ORTHO05D005008 4.6e-77 291.6 234 68.4
Dinv27993 Davidia involucrata HOM05D004260 ORTHO05D005008 4.6e-77 291.6 198 73.7
GSVIVG01035395001 Vitis vinifera HOM05D004260 ORTHO05D005008 4.6e-77 291.6 199 74.4
CAN.G2021.1 Capsicum annuum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 199 72.9
Lj4C302G2 Lonicera japonica HOM05D004260 ORTHO05D005008 1.0e-76 290.4 198 75.8
Solyc07g039450.3 Solanum lycopersicum HOM05D004260 ORTHO05D005008 1.0e-76 290.4 198 74.7
Gohir.A06G087000 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 201 73.1
Gohir.D06G086500 Gossypium hirsutum HOM05D004260 ORTHO05D005008 1.3e-76 290.0 201 73.1
THA.LOC104824639 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 1.3e-76 290.0 198 74.7
Thecc.09G054900 Theobroma cacao HOM05D004260 ORTHO05D005008 1.3e-76 290.0 200 73.5
CDE06G0826 Ceratophyllum demersum HOM05D004260 ORTHO05D005008 1.7e-76 289.7 198 71.7
Phvul.009G231900 Phaseolus vulgaris HOM05D004260 ORTHO05D005008 1.7e-76 289.7 198 79.8
C03p06060 Brassica napus HOM05D004260 ORTHO05D005008 2.3e-76 289.3 198 74.2
BolC3t13116H Brassica oleracea HOM05D004260 ORTHO05D005008 2.3e-76 289.3 198 74.2
VMungo1309G1896 Vigna mungo HOM05D004260 ORTHO05D005008 2.3e-76 289.3 198 79.8
Cc06_g11470 Coffea canephora HOM05D004260 ORTHO05D005008 6.6e-76 287.7 198 73.2
Hma1.2p1_0800F.1_g220190 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 6.6e-76 287.7 199 75.4
Potri.018G052900 Populus trichocarpa HOM05D004260 ORTHO05D005008 6.6e-76 287.7 202 71.3
TWI34G0209 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 6.6e-76 287.7 202 71.8
AL6G22660 Arabidopsis lyrata HOM05D004260 ORTHO05D005008 8.7e-76 287.3 200 74.0
AT5G11900 Arabidopsis thaliana HOM05D004260 ORTHO05D005008 8.7e-76 287.3 200 74.0
CSS0039252 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 8.7e-76 287.3 199 72.4
Carub.0006s1043 Capsella rubella HOM05D004260 ORTHO05D005008 8.7e-76 287.3 200 78.0
COL.COLO4_21070 Corchorus olitorius HOM05D004260 ORTHO05D005008 1.1e-75 287.0 200 72.5
Thhalv10014721m.g Eutrema salsugineum HOM05D004260 ORTHO05D005008 1.1e-75 287.0 200 73.5
Nitab4.5_0008381g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.1e-75 287.0 198 74.2
EL10Ac8g19203 Beta vulgaris HOM05D004260 ORTHO05D005008 1.5e-75 286.6 198 73.2
Dinv36773 Davidia involucrata HOM05D004260 ORTHO05D005008 1.5e-75 286.6 198 74.2
HanXRQChr09g0238081 Helianthus annuus HOM05D004260 ORTHO05D005008 1.5e-75 286.6 198 72.2
Oeu006009.1 Olea europaea HOM05D004260 ORTHO05D005008 1.5e-75 286.6 201 74.1
MSTRG.10559 Avicennia marina HOM05D004260 ORTHO05D005008 1.9e-75 286.2 198 73.2
BraA10t44649Z Brassica rapa HOM05D004260 ORTHO05D005008 1.9e-75 286.2 200 73.5
Potri.006G228100 Populus trichocarpa HOM05D004260 ORTHO05D005008 1.9e-75 286.2 202 71.3
BolC9t59323H Brassica oleracea HOM05D004260 ORTHO05D005008 2.5e-75 285.8 200 73.0
Nitab4.5_0006570g0040 Nicotiana tabacum HOM05D004260 ORTHO05D005008 3.3e-75 285.4 199 74.4
A03p05270 Brassica napus HOM05D004260 ORTHO05D005008 4.3e-75 285.0 199 73.9
BraA03t09866Z Brassica rapa HOM05D004260 ORTHO05D005008 4.3e-75 285.0 198 74.2
A10p25860 Brassica napus HOM05D004260 ORTHO05D005008 5.6e-75 284.6 200 73.0
C09p64930 Brassica napus HOM05D004260 ORTHO05D005008 5.6e-75 284.6 200 73.0
Nn6g35497 Nelumbo nucifera HOM05D004260 ORTHO05D005008 7.3e-75 284.3 202 76.2
Nn8g38836 Nelumbo nucifera HOM05D004260 ORTHO05D005008 7.3e-75 284.3 201 78.1
RcHm_v2.0_Chr2g0093471 Rosa chinensis HOM05D004260 ORTHO05D005008 7.3e-75 284.3 198 73.7
Sopen12g003830 Solanum pennellii HOM05D004260 ORTHO05D005008 7.3e-75 284.3 198 72.7
PGSC0003DMG400000336 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.3e-75 284.3 198 72.7
Cc08_g10690 Coffea canephora HOM05D004260 ORTHO05D005008 9.6e-75 283.9 197 70.6
PGR031G3480 Punica granatum HOM05D004260 ORTHO05D005008 9.6e-75 283.9 200 71.5
Solyc12g008910.2 Solanum lycopersicum HOM05D004260 ORTHO05D005008 9.6e-75 283.9 198 72.7
CARHR201260 Cardamine hirsuta HOM05D004260 ORTHO05D005008 1.3e-74 283.5 200 73.0
Nitab4.5_0009711g0010 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-74 283.5 198 71.2
AUR62029063 Chenopodium quinoa HOM05D004260 ORTHO05D005008 1.6e-74 283.1 198 72.7
Duzib187G0539 Durio zibethinus HOM05D004260 ORTHO05D005008 1.6e-74 283.1 201 71.1
Sp6g31700 Schrenkiella parvula HOM05D004260 ORTHO05D005008 1.6e-74 283.1 200 73.0
AUR62033956 Chenopodium quinoa HOM05D004260 ORTHO05D005008 2.1e-74 282.7 198 72.7
Dinv22892 Davidia involucrata HOM05D004260 ORTHO05D005008 2.1e-74 282.7 198 71.7
TWI63G1437 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 2.8e-74 282.3 204 69.6
Lsat_1_v5_gn_7_36961 Lactuca sativa HOM05D004260 ORTHO05D005008 3.6e-74 282.0 198 71.7
MBI01_g09942_MAGBIO Magnolia biondii HOM05D004260 ORTHO05D005008 3.6e-74 282.0 200 79.5
Peaxi162Scf00498g00316 Petunia axillaris HOM05D004260 ORTHO05D005008 4.8e-74 281.6 198 71.7
TWI32G1258 Tripterygium wilfordii HOM05D004260 ORTHO05D005008 4.8e-74 281.6 202 69.8
FAN26G0564 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.2e-74 281.2 198 73.7
FAN26G1218 Fragaria x ananassa HOM05D004260 ORTHO05D005008 6.2e-74 281.2 198 73.7
HPP92_008780 Vanilla planifolia HOM05D004260 ORTHO05D005008 8.1e-74 280.8 205 70.2
Hma1.2p1_0544F.1_g175770 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.1e-73 280.4 198 70.2
FvH4_1g07600 Fragaria vesca HOM05D004260 ORTHO05D005008 1.4e-73 280.0 198 73.2
Migut.L01498 Erythranthe guttata HOM05D004260 ORTHO05D005008 1.8e-73 279.6 198 72.2
THA.LOC104799697 Tarenaya hassleriana HOM05D004260 ORTHO05D005008 3.1e-73 278.9 198 72.7
BcaB01g05442 Brassica carinata HOM05D004260 ORTHO05D005008 4.0e-73 278.5 199 72.9
Eucgr.C00657 Eucalyptus grandis HOM05D004260 ORTHO05D005008 1.2e-72 276.9 204 69.6
Lsat_1_v5_gn_5_142620 Lactuca sativa HOM05D004260 ORTHO05D005008 2.0e-72 276.2 196 69.9
TAR383G1013 Trochodendron aralioides HOM05D004260 ORTHO05D005008 2.6e-72 275.8 199 71.4
ECA234G2134 Erigeron canadensis HOM05D000597 ORTHO05D000603 3.4e-72 275.4 196 71.9
HanXRQChr03g0060381 Helianthus annuus HOM05D004260 ORTHO05D005008 5.8e-72 274.6 198 70.2
FAN23G1035 Fragaria x ananassa HOM05D004260 ORTHO05D005008 9.9e-72 273.9 206 70.9
Nitab4.5_0000540g0300 Nicotiana tabacum HOM05D004260 ORTHO05D005008 1.3e-71 273.5 214 65.9
Os01g0195500 Oryza sativa ssp. japonica HOM05D004260 ORTHO05D005008 1.7e-71 273.1 200 71.0
arahy.Tifrunner.gnm1.ann1.5Q7AHD Arachis hypogaea HOM05D004260 ORTHO05D005008 2.2e-71 272.7 193 76.7
FAN19G2674 Fragaria x ananassa HOM05D004260 ORTHO05D005008 2.9e-71 272.3 210 69.5
DCAR_032234 Daucus carota HOM05D004260 ORTHO05D005008 6.4e-71 271.2 198 70.2
Sed0011229 Sechium edule HOM05D004260 ORTHO05D005008 6.4e-71 271.2 198 71.7
PSO832G0278 Papaver somniferum HOM05D004260 ORTHO05D005008 1.4e-70 270.0 201 69.2
unitig_8.g4689 Utricularia gibba HOM05D004260 ORTHO05D005008 1.9e-70 269.6 198 70.2
SGA_v2.0_scaffold21G09393 Striga asiatica HOM05D004260 ORTHO05D005008 4.2e-70 268.5 247 59.5
Ciclev10009478m.g Citrus clementina HOM05D004260 ORTHO05D005008 9.3e-70 267.3 187 72.2
Cpa.g.sc7.180 Carica papaya HOM05D004260 ORTHO05D005008 1.2e-69 266.9 199 69.3
PSO063G3594 Papaver somniferum HOM05D004260 ORTHO05D005008 1.2e-69 266.9 201 68.7
Zm00001eb120970 Zea mays HOM05D004260 ORTHO05D005008 4.6e-69 265.0 205 66.8
Gorai.001G012200 Gossypium raimondii HOM05D004260 ORTHO05D005008 6.0e-69 264.6 180 75.6
Sc18g0002130 Simmondsia chinensis HOM05D004260 ORTHO05D005008 6.0e-69 264.6 221 63.3
TAR626G0903 Trochodendron aralioides HOM05D004260 ORTHO05D005008 6.0e-69 264.6 202 79.2
Haze_25919 Corylus avellana HOM05D004260 ORTHO05D005008 1.8e-68 263.1 179 74.3
COL.COLO4_18193 Corchorus olitorius HOM05D004260 ORTHO05D005008 2.3e-68 262.7 198 77.3
Aqoxy7G01195 Aquilegia oxysepala HOM05D004260 ORTHO05D005008 3.0e-68 262.3 181 74.0
Zm00001eb337840 Zea mays HOM05D004260 ORTHO05D005008 3.9e-68 261.9 214 65.9
Sabra06G0176600 Salix brachista HOM05D004260 ORTHO05D005008 7.4e-67 257.7 224 61.2
Gorai.010G099800 Gossypium raimondii HOM05D004260 ORTHO05D005008 1.3e-66 256.9 183 71.0
Mapoly0060s0048 Marchantia polymorpha HOM05D004260 ORTHO05D005008 6.9e-65 251.1 196 64.8
Pp3c12_14030 Physcomitrium patens HOM05D004260 ORTHO05D005008 1.5e-64 250.0 198 64.1
Aa31LG3G15300 Aethionema arabicum HOM05D000486 ORTHO05D000375 1.3e-63 246.9 181 70.7
FAN28G0075 Fragaria x ananassa HOM05D004260 ORTHO05D005008 1.3e-63 246.9 179 72.1
arahy.Tifrunner.gnm1.ann1.Z7F7FH Arachis hypogaea HOM05D004260 ORTHO05D005008 3.2e-62 242.3 198 69.2
Oeu041239.3 Olea europaea HOM05D004260 ORTHO05D005008 4.2e-62 241.9 219 61.2
Pp3c10_12320 Physcomitrium patens HOM05D004260 ORTHO05D005008 4.2e-62 241.9 204 61.3
SalBow1G5356 Salvia bowleyana HOM05D004260 ORTHO05D005008 3.0e-60 235.7 205 61.5
SMO358G0331 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 5.1e-60 235.0 191 62.3
SMO174G0261 Selaginella moellendorffii HOM05D004260 ORTHO05D005008 6.7e-60 234.6 189 62.4
Sabra18G0048600 Salix brachista HOM05D004260 ORTHO05D005008 1.1e-59 233.8 214 58.4
Duzib168G0274 Durio zibethinus HOM05D004260 ORTHO05D005008 3.3e-59 232.3 179 77.7
CBR_g17727 Chara braunii HOM05D004260 ORTHO05D005008 4.3e-59 231.9 199 60.3
ATR0626G046 Amborella trichopoda HOM05D004260 ORTHO05D005008 7.4e-59 231.1 196 63.8
SHI18732 Sapria himalayana HOM05D004260 ORTHO05D005008 1.4e-57 226.9 183 63.4
AagrBONN_evm.TU.Sc2ySwM_228.3486 Anthoceros agrestis HOM05D004260 ORTHO05D005008 1.3e-55 220.3 184 61.4
ECA240G4046 Erigeron canadensis HOM05D004260 ORTHO05D005008 9.7e-51 204.1 202 56.9
Duzib168G0611 Durio zibethinus HOM05D004260 ORTHO05D005008 9.0e-49 197.6 154 70.8
Sc08g0008490 Simmondsia chinensis HOM05D004260 ORTHO05D005008 1.4e-46 190.3 106 89.6
SEGI_28146 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 8.8e-44 181.0 106 81.1
Aa31LG3G15370 Aethionema arabicum HOM05D004260 ORTHO05D005008 1.5e-40 170.2 181 54.1
PGSC0003DMG400042965 Solanum tuberosum HOM05D004260 ORTHO05D005008 7.2e-38 161.4 88 90.9
Cc04_g14970 Coffea canephora HOM05D004260 ORTHO05D005008 1.6e-37 160.2 88 90.9
MELO3C029330.2 Cucumis melo HOM05D004260 ORTHO05D005008 3.6e-37 159.1 87 89.7
BcaC03g13398 Brassica carinata HOM05D004260 ORTHO05D005008 3.1e-33 146.0 188 50.0
BolC2t06491H Brassica oleracea HOM05D002137 ORTHO05D002144 2.5e-30 136.3 97 76.3
Nn8g38839 Nelumbo nucifera HOM05D004260 ORTHO05D005008 1.0e-28 131.0 70 91.4
MELO3C000253.2 Cucumis melo HOM05D004260 ORTHO05D005008 1.3e-26 124.0 72 79.2
PRCOL_00004295 Prasinoderma coloniale HOM05D004260 ORTHO05D005008 4.8e-26 122.1 192 42.7
BraA02t05104Z Brassica rapa HOM05D002137 ORTHO05D002144 1.8e-25 120.2 198 43.9
Hund25938 Selenicereus undatus HOM05D004260 ORTHO05D005008 3.1e-25 119.4 87 72.4
Actinidia25247 Actinidia chinensis HOM05D004260 ORTHO05D005008 4.1e-25 119.0 101 58.4
Hund25937 Selenicereus undatus HOM05D004260 ORTHO05D005008 1.7e-23 113.6 71 69.0
Dinv42323 Davidia involucrata HOM05D004260 ORTHO05D005008 9.4e-22 107.8 100 64.0
Cre07.g353550 Chlamydomonas reinhardtii HOM05D004260 ORTHO05D005008 3.6e-21 105.9 193 35.8
A02p01250 Brassica napus HOM05D002137 ORTHO05D002144 1.2e-19 100.9 98 62.2
C02p05430 Brassica napus HOM05D002137 ORTHO05D002144 6.3e-18 95.1 98 60.2
Thecc.08G139700 Theobroma cacao HOM05D004260 ORTHO05D005008 1.8e-17 93.6 72 63.9
MCO02G463 Micromonas commoda HOM05D004260 ORTHO05D005008 2.5e-14 83.2 171 39.2
Dinv40360 Davidia involucrata HOM05D003556 ORTHO05D003404 3.2e-14 82.8 57 68.4
Hma1.2p1_2962F.1_g330920 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 9.4e-14 81.3 51 78.4
Dinv42322 Davidia involucrata HOM05D004260 ORTHO05D005008 1.2e-13 80.9 75 53.3
Hma1.2p1_0436F.1_g152910 Hydrangea macrophylla HOM05D004260 ORTHO05D005008 1.6e-13 80.5 53 75.5
SEGI_12725 Sequoiadendron giganteum HOM05D004260 ORTHO05D005008 3.0e-12 76.3 53 66.0
Dinv35353 Davidia involucrata HOM05D004260 ORTHO05D005008 7.5e-11 71.6 50 70.0
CSS0010633 Camellia sinensis var. sinensis HOM05D004260 ORTHO05D005008 1.3e-10 70.9 72 55.6


User provided reference genes

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