Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g007310 Medicago truncatula HOM05D006950 ORTHO05D008798 3.4e-197 691.4 340 100.0
TPR.G9714 Trifolium pratense HOM05D006950 ORTHO05D008798 5.0e-172 607.8 343 87.5
Lj1g0016691 Lotus japonicus HOM05D006950 ORTHO05D008798 1.8e-153 546.2 343 79.0
Lalb_Chr17g0335791 Lupinus albus HOM05D006950 ORTHO05D008798 5.0e-148 528.1 340 77.1
arahy.Tifrunner.gnm1.ann1.J0JTFL Arachis hypogaea HOM05D006950 ORTHO05D008798 8.0e-146 520.8 318 78.3
arahy.Tifrunner.gnm1.ann1.QXSY6T Arachis hypogaea HOM05D006950 ORTHO05D008798 8.0e-146 520.8 318 78.3
Psat3g205440 Pisum sativum HOM05D006950 ORTHO05D008798 1.7e-143 513.1 337 76.6
Phvul.008G006100 Phaseolus vulgaris HOM05D006950 ORTHO05D008798 2.8e-143 512.3 334 75.1
Glyma.18G296400 Glycine max HOM05D006950 ORTHO05D008798 1.4e-142 510.0 319 79.0
VMungo1383G3190 Vigna mungo HOM05D006950 ORTHO05D008798 5.9e-141 504.6 331 74.3
GSVIVG01031019001 Vitis vinifera HOM05D006950 ORTHO05D008798 4.1e-134 481.9 308 75.3
CANSAT78G2296 Cannabis sativa HOM05D006950 ORTHO05D008798 1.2e-133 480.3 338 70.7
Actinidia36323 Actinidia chinensis HOM05D006950 ORTHO05D008798 3.5e-133 478.8 337 68.2
Manes.02G068900 Manihot esculenta HOM05D006950 ORTHO05D008798 1.7e-132 476.5 347 68.9
TAR629G2916 Trochodendron aralioides HOM05D006950 ORTHO05D008798 6.6e-132 474.6 344 68.6
Prupe.3G142000 Prunus persica HOM05D006950 ORTHO05D008798 1.5e-131 473.4 348 69.0
Thecc.04G133400 Theobroma cacao HOM05D006950 ORTHO05D008798 2.5e-131 472.6 340 69.4
Gohir.A11G163600 Gossypium hirsutum HOM05D006950 ORTHO05D008798 5.6e-131 471.5 313 72.2
MD17G1244700 Malus domestica HOM05D006950 ORTHO05D008798 7.3e-131 471.1 344 68.6
Gorai.007G181600 Gossypium raimondii HOM05D006950 ORTHO05D008798 1.2e-130 470.3 313 71.9
Ciclev10012146m.g Citrus clementina HOM05D006950 ORTHO05D008798 3.6e-130 468.8 315 72.1
Gohir.D11G169900 Gossypium hirsutum HOM05D006950 ORTHO05D008798 4.7e-130 468.4 313 71.2
Dinv33949 Davidia involucrata HOM05D006950 ORTHO05D008798 2.3e-129 466.1 313 73.2
CiPaw.04G042300 Carya illinoinensis HOM05D006950 ORTHO05D008798 5.2e-129 464.9 321 72.3
TWI53G1811 Tripterygium wilfordii HOM05D006950 ORTHO05D008798 8.9e-129 464.2 338 68.0
Atru.chr1.1690 Acer truncatum HOM05D006950 ORTHO05D008798 2.6e-128 462.6 327 70.3
Haze_14155 Corylus avellana HOM05D006950 ORTHO05D008798 2.6e-128 462.6 313 72.8
MSTRG.15296 Avicennia marina HOM05D006950 ORTHO05D008798 1.3e-127 460.3 305 74.1
Potri.004G099300 Populus trichocarpa HOM05D006950 ORTHO05D008798 1.7e-127 459.9 320 70.9
Cpa.g.sc282.6 Carica papaya HOM05D006950 ORTHO05D008798 4.9e-127 458.4 315 72.4
PGSC0003DMG400026406 Solanum tuberosum HOM05D006950 ORTHO05D008798 6.4e-127 458.0 340 65.0
PGR142G3639 Punica granatum HOM05D006950 ORTHO05D008798 8.3e-127 457.6 308 71.8
Hund13713 Selenicereus undatus HOM05D006950 ORTHO05D008798 8.3e-127 457.6 317 71.6
Eucgr.G03073 Eucalyptus grandis HOM05D006950 ORTHO05D008798 9.2e-126 454.1 306 70.3
Nn3g17879 Nelumbo nucifera HOM05D006950 ORTHO05D008798 9.2e-126 454.1 327 67.3
vmacro05553 Vaccinium macrocarpon HOM05D006950 ORTHO05D008798 1.2e-125 453.8 330 67.0
Nitab4.5_0000659g0020 Nicotiana tabacum HOM05D006950 ORTHO05D008798 2.1e-125 453.0 342 64.6
Peaxi162Scf00394g00061 Petunia axillaris HOM05D006950 ORTHO05D008798 2.1e-125 453.0 316 69.0
Lj4A191T50 Lonicera japonica HOM05D006950 ORTHO05D008798 6.0e-125 451.4 318 69.8
Sed0021084 Sechium edule HOM05D006950 ORTHO05D008798 6.0e-125 451.4 309 70.2
Oeu007452.1 Olea europaea HOM05D006950 ORTHO05D008798 1.0e-124 450.7 323 68.1
CDE06G1236 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 1.3e-124 450.3 306 71.2
Aqoxy3G00267 Aquilegia oxysepala HOM05D006950 ORTHO05D008798 2.3e-124 449.5 351 63.5
EL10Ac2g04564 Beta vulgaris HOM05D006950 ORTHO05D008798 3.9e-124 448.7 342 65.8
Cc07_g08790 Coffea canephora HOM05D006950 ORTHO05D008798 1.1e-123 447.2 318 68.9
Nitab4.5_0000912g0220 Nicotiana tabacum HOM05D006950 ORTHO05D008798 1.9e-123 446.4 342 63.2
Sopen02g030760 Solanum pennellii HOM05D006950 ORTHO05D008798 1.9e-123 446.4 338 63.6
Migut.L00319 Erythranthe guttata HOM05D006950 ORTHO05D008798 5.6e-123 444.9 312 69.6
Hma1.2p1_0136F.1_g062250 Hydrangea macrophylla HOM05D006950 ORTHO05D008798 9.5e-123 444.1 313 69.0
CAN.G625.25 Capsicum annuum HOM05D006950 ORTHO05D008798 1.6e-122 443.4 343 63.6
ClCG03G006740 Citrullus lanatus HOM05D006950 ORTHO05D008798 1.6e-122 443.4 329 66.0
PSO017G6790 Papaver somniferum HOM05D006950 ORTHO05D008798 3.6e-122 442.2 303 69.3
MBI16_g34414_MAGBIO Magnolia biondii HOM05D006950 ORTHO05D008798 2.3e-121 439.5 316 68.7
unitig_0.g2608 Utricularia gibba HOM05D005540 ORTHO05D006932 3.1e-121 439.1 306 69.6
AL7G52300 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 6.8e-121 438.0 314 67.8
ECA246G0391 Erigeron canadensis HOM05D006950 ORTHO05D008798 2.6e-120 436.0 308 68.5
AL7G52280 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 3.4e-120 435.6 314 68.2
AL7G52430 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 3.4e-120 435.6 314 68.2
CsaV3_1G032300 Cucumis sativus L. HOM05D006950 ORTHO05D008798 5.8e-120 434.9 334 65.9
THA.LOC104805569 Tarenaya hassleriana HOM05D006950 ORTHO05D008798 2.2e-119 433.0 314 67.2
HanXRQChr15g0471491 Helianthus annuus HOM05D006950 ORTHO05D008798 4.9e-119 431.8 307 67.4
Thhalv10027821m.g Eutrema salsugineum HOM05D006950 ORTHO05D008798 6.4e-119 431.4 310 67.4
BraA07t29668Z Brassica rapa HOM05D006950 ORTHO05D008798 8.3e-119 431.0 310 67.4
A07p19680 Brassica napus HOM05D006950 ORTHO05D008798 1.1e-118 430.6 310 67.4
PSO478G4580 Papaver somniferum HOM05D006950 ORTHO05D008798 2.7e-117 426.0 303 67.7
Eucgr.G03074 Eucalyptus grandis HOM05D006950 ORTHO05D008798 1.7e-116 423.3 306 64.1
C06p18110 Brassica napus HOM05D006950 ORTHO05D008798 3.9e-116 422.2 309 66.0
BolC6t37017H Brassica oleracea HOM05D006950 ORTHO05D008798 3.9e-116 422.2 311 65.9
ATR1125G044 Amborella trichopoda HOM05D006950 ORTHO05D008798 6.6e-116 421.4 315 66.0
Lsat_1_v5_gn_3_79740 Lactuca sativa HOM05D006950 ORTHO05D008798 1.9e-115 419.9 317 68.1
BcaC08g44377 Brassica carinata HOM05D006950 ORTHO05D008798 3.3e-115 419.1 309 65.4
Ca_04046_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 4.3e-115 418.7 222 90.5
Aa31LG9G17120 Aethionema arabicum HOM05D006950 ORTHO05D008798 5.6e-115 418.3 309 66.7
AUR62023300 Chenopodium quinoa HOM05D006950 ORTHO05D008798 1.8e-113 413.3 302 67.9
Duzib138G1034 Durio zibethinus HOM05D006950 ORTHO05D008798 8.4e-111 404.4 279 73.1
Cfa007922 Carpinus fangiana HOM05D006950 ORTHO05D008798 5.1e-108 395.2 332 62.3
BcaB02g08012 Brassica carinata HOM05D006950 ORTHO05D008798 1.1e-107 394.0 296 65.5
Carub.0007s3770 Capsella rubella HOM05D006950 ORTHO05D008798 3.3e-107 392.5 284 67.6
Sp7g03690 Schrenkiella parvula HOM05D006950 ORTHO05D008798 3.3e-107 392.5 289 67.5
Sc11g0008340 Simmondsia chinensis HOM05D006950 ORTHO05D008798 7.3e-107 391.3 316 62.0
MELO3C002748.2 Cucumis melo HOM05D006950 ORTHO05D008798 2.5e-99 366.3 287 65.9
COL.COLO4_09336 Corchorus olitorius HOM05D006950 ORTHO05D008798 2.0e-96 356.7 304 60.2
Rhsim10G0067400 Rhododendron simsii HOM05D006950 ORTHO05D008798 2.1e-93 346.7 312 57.7
DCAR_017190 Daucus carota HOM05D006950 ORTHO05D008798 1.5e-91 340.5 328 54.0
Pp3c2_1510 Physcomitrium patens HOM05D006950 ORTHO05D008798 4.8e-90 335.5 297 54.5
SMO232G0122 Selaginella moellendorffii HOM05D006950 ORTHO05D008798 4.5e-88 328.9 299 55.5
CSS0013921 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 1.0e-87 327.8 225 69.3
QL02p051313 Quercus lobata HOM05D006950 ORTHO05D008798 3.2e-86 322.8 227 69.6
Mapoly0010s0040 Marchantia polymorpha HOM05D006950 ORTHO05D008798 2.1e-82 310.1 317 48.3
AUR62009002 Chenopodium quinoa HOM05D006950 ORTHO05D008798 6.9e-81 305.1 301 55.5
AL686U10010 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 2.2e-79 300.1 314 50.3
CARHR214230 Cardamine hirsuta HOM05D006950 ORTHO05D008798 7.1e-78 295.0 209 67.9
AL7G52400 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.3e-74 284.3 311 51.8
Nn3g17880 Nelumbo nucifera HOM05D006950 ORTHO05D008798 7.9e-69 265.0 181 68.0
Sabra04G0080700 Salix brachista HOM05D006950 ORTHO05D008798 1.0e-68 264.6 193 66.3
AT5G38360 Arabidopsis thaliana HOM05D006950 ORTHO05D008798 3.0e-68 263.1 193 65.3
arahy.Tifrunner.gnm1.ann1.IRCK44 Arachis hypogaea HOM05D006950 ORTHO05D008798 1.7e-63 247.3 168 73.8
Cre04.g213100 Chlamydomonas reinhardtii HOM05D006950 ORTHO05D008798 1.7e-63 247.3 304 43.1
CBR_g51039 Chara braunii HOM05D006950 ORTHO05D008798 1.4e-62 244.2 364 37.6
MCO15G495 Micromonas commoda HOM05D006950 ORTHO05D008798 3.5e-56 223.0 256 43.4
arahy.Tifrunner.gnm1.ann1.5L16AK Arachis hypogaea HOM05D006950 ORTHO05D008798 8.0e-53 211.8 198 55.1
CDE12G0582 Ceratophyllum demersum HOM05D006950 ORTHO05D008798 9.1e-49 198.4 295 41.0
arahy.Tifrunner.gnm1.ann1.J8JPII Arachis hypogaea HOM05D006950 ORTHO05D008798 1.2e-48 198.0 206 54.4
AagrBONN_evm.TU.Sc2ySwM_362.1440 Anthoceros agrestis HOM05D006950 ORTHO05D008798 7.7e-40 168.7 131 57.3
Glyma.08G365850 Glycine max HOM05D006950 ORTHO05D008798 1.3e-39 167.9 103 80.6
Ca_04053_v3 Cicer arietinum L. HOM05D006950 ORTHO05D008798 5.5e-38 162.5 88 87.5
arahy.Tifrunner.gnm1.ann1.BFZE3W Arachis hypogaea HOM05D006950 ORTHO05D008798 1.4e-33 147.9 91 80.2
QL02p051310 Quercus lobata HOM05D006950 ORTHO05D008798 4.1e-33 146.4 90 77.8
AL7G52260 Arabidopsis lyrata HOM05D006950 ORTHO05D008798 1.2e-32 144.8 107 63.6
CSS0023207 Camellia sinensis var. sinensis HOM05D006950 ORTHO05D008798 4.7e-29 132.9 93 65.6
Os04g0381400 Oryza sativa ssp. japonica HOM05D006950 ORTHO05D008798 1.1e-25 121.7 99 58.6
PRCOL_00005525 Prasinoderma coloniale HOM05D006950 ORTHO05D008798 3.2e-25 120.2 196 36.2
AagrBONN_evm.TU.Sc2ySwM_368.701 Anthoceros agrestis HOM05D006950 ORTHO05D008798 2.7e-24 117.1 294 29.3
Solyc02g086080.4 Solanum lycopersicum HOM05D006950 ORTHO05D008798 7.3e-22 109.0 100 53.0
Lalb_Chr02g0149821 Lupinus albus HOM05D000916 ORTHO05D007921 5.4e-09 66.2 282 26.6
Eucgr.F04110 Eucalyptus grandis HOM05D000916 ORTHO05D007921 3.5e-08 63.5 293 25.9
arahy.Tifrunner.gnm1.ann1.G72GGE Arachis hypogaea HOM05D000916 ORTHO05D007921 7.8e-08 62.4 244 28.7
Manes.16G046800 Manihot esculenta HOM05D000916 ORTHO05D007921 1.0e-07 62.0 296 25.3
TWI12G0975 Tripterygium wilfordii HOM05D000916 ORTHO05D007921 2.3e-07 60.8 238 26.9
Mapoly0026s0052 Marchantia polymorpha HOM05D000224 ORTHO05D001489 3.0e-07 60.5 149 26.2
HanXRQChr09g0266951 Helianthus annuus HOM05D000916 ORTHO05D007921 1.1e-06 58.5 160 28.8
VMungo0720G0569 Vigna mungo HOM05D000916 ORTHO05D007921 1.1e-06 58.5 291 25.4
CiPaw.03G193200 Carya illinoinensis HOM05D000916 ORTHO05D007921 2.5e-06 57.4 242 25.2
Ca_09901_v3 Cicer arietinum L. HOM05D000916 ORTHO05D007921 3.3e-06 57.0 238 26.1
Medtr1g076920 Medicago truncatula HOM05D000916 ORTHO05D007921 3.3e-06 57.0 291 24.1
Haze_01682 Corylus avellana HOM05D006950 ORTHO05D043621 5.6e-06 56.2 30 73.3
Lj5g0015287 Lotus japonicus HOM05D000916 ORTHO05D007921 7.3e-06 55.8 284 26.1
MBI03_g28954_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D007921 7.3e-06 55.8 140 31.4
arahy.Tifrunner.gnm1.ann1.Y677VA Arachis hypogaea HOM05D000916 ORTHO05D007921 9.5e-06 55.5 235 28.1
MSTRG.25473 Avicennia marina HOM05D000916 ORTHO05D007921 9.5e-06 55.5 308 24.7
Glyma.20G214000 Glycine max HOM05D000916 ORTHO05D007921 9.5e-06 55.5 240 25.8


User provided reference genes

Program Settings