Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 9.0e-77 290.0 133 100.0
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 6.9e-69 263.8 133 91.0
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 6.0e-65 250.8 128 88.3
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 3.9e-64 248.1 133 85.7
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 1.1e-61 240.0 138 79.0
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 2.6e-60 235.3 131 80.9
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 3.4e-60 235.0 134 76.9
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 3.2e-58 228.4 140 75.0
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 1.0e-56 223.4 130 78.5
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 4.3e-55 218.0 118 79.7
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 1.7e-54 216.1 118 76.3
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 8.2e-54 213.8 130 72.3
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 1.1e-53 213.4 135 70.4
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 1.8e-53 212.6 124 75.0
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 3.1e-53 211.8 124 74.2
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 5.3e-53 211.1 118 78.0
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 9.1e-53 210.3 118 77.1
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 1.2e-52 209.9 135 71.1
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.5e-52 209.5 113 79.6
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 1.5e-52 209.5 118 76.3
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.5e-52 209.5 118 74.6
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 2.0e-52 209.1 135 68.9
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 2.6e-52 208.8 118 77.1
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 2.6e-52 208.8 118 78.0
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 2.6e-52 208.8 118 76.3
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.6e-52 208.8 113 76.1
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 3.4e-52 208.4 135 69.6
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 4.5e-52 208.0 118 74.6
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 4.5e-52 208.0 118 78.0
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 4.5e-52 208.0 118 76.3
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 5.9e-52 207.6 124 72.6
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 5.9e-52 207.6 118 76.3
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 5.9e-52 207.6 135 69.6
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.7e-51 206.1 126 69.0
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 1.7e-51 206.1 109 80.7
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 2.9e-51 205.3 126 73.0
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 3.8e-51 204.9 131 69.5
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 6.5e-51 204.1 126 73.0
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 6.5e-51 204.1 130 69.2
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.1e-50 203.4 133 69.9
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 1.1e-50 203.4 113 76.1
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.1e-50 203.4 118 74.6
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.4e-50 203.0 113 75.2
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.4e-50 203.0 113 75.2
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.9e-50 202.6 113 75.2
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 1.9e-50 202.6 113 75.2
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 2.5e-50 202.2 123 72.4
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 3.2e-50 201.8 113 73.5
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.2e-50 201.8 118 72.0
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 4.2e-50 201.4 118 75.4
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 4.2e-50 201.4 118 75.4
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.5e-50 201.1 128 70.3
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.5e-50 201.1 118 72.9
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.5e-50 201.1 118 72.9
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 5.5e-50 201.1 118 73.7
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 7.2e-50 200.7 131 66.4
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 9.4e-50 200.3 118 72.9
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.2e-49 199.9 120 70.8
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 1.6e-49 199.5 118 72.9
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 4.7e-49 198.0 126 66.7
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 6.1e-49 197.6 118 72.9
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 6.1e-49 197.6 125 66.4
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 6.1e-49 197.6 118 72.0
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 7.9e-49 197.2 118 72.9
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 1.0e-48 196.8 116 73.3
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 1.8e-48 196.1 115 71.3
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.8e-48 196.1 118 70.3
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 2.3e-48 195.7 113 71.7
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 3.0e-48 195.3 128 68.0
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 5.1e-48 194.5 113 72.6
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 6.7e-48 194.1 113 71.7
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 6.7e-48 194.1 118 72.0
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 8.8e-48 193.7 124 68.5
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 8.8e-48 193.7 118 71.2
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 2.0e-47 192.6 130 68.5
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 2.0e-47 192.6 124 68.5
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 2.6e-47 192.2 124 69.4
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 2.6e-47 192.2 124 69.4
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 2.6e-47 192.2 113 71.7
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 3.3e-47 191.8 130 66.9
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 4.4e-47 191.4 113 71.7
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 4.4e-47 191.4 130 66.9
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 5.7e-47 191.0 130 66.9
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 7.4e-47 190.7 124 69.4
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 7.4e-47 190.7 124 69.4
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 1.7e-46 189.5 108 75.9
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 2.2e-46 189.1 124 68.5
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.2e-46 189.1 130 66.2
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.8e-46 188.7 135 65.9
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 2.8e-46 188.7 135 64.4
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 3.7e-46 188.3 130 66.9
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 4.8e-46 188.0 124 67.7
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 8.2e-46 187.2 124 67.7
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 1.1e-45 186.8 124 69.4
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 1.8e-45 186.0 130 66.2
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 1.8e-45 186.0 130 66.9
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.4e-45 185.7 120 66.7
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 3.1e-45 185.3 131 67.2
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 3.1e-45 185.3 131 67.2
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 3.1e-45 185.3 124 67.7
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 5.3e-45 184.5 124 66.9
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 7.0e-45 184.1 113 70.8
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 9.1e-45 183.7 131 66.4
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.5e-44 183.0 113 69.0
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.1e-41 171.0 106 68.9
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 6.1e-41 171.0 106 68.9
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 3.0e-40 168.7 108 64.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 3.9e-40 168.3 125 61.6
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 4.8e-38 161.4 89 76.4
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 3.5e-36 155.2 108 61.1
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 5.0e-35 151.4 155 49.0
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.2e-34 148.7 108 54.6
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 1.2e-33 146.7 113 52.2
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 6.1e-33 144.4 131 48.9
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 3.0e-32 142.1 114 60.5
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 2.0e-31 139.4 108 57.4
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 8.3e-30 134.0 89 64.0
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.1e-29 131.7 133 45.1
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 2.9e-27 125.6 69 73.9
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 5.5e-26 121.3 56 87.5
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 8.0e-25 117.5 55 83.6
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.3e-16 89.4 44 84.1
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 8.3e-14 80.9 102 43.1
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.2e-13 79.0 46 67.4
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.1e-13 78.6 52 65.4
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 9.2e-13 77.4 40 80.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 2.9e-11 72.4 51 60.8
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 3.9e-11 72.0 52 59.6
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 3.3e-10 68.9 61 47.5
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.5e-10 67.4 51 56.9
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.6e-09 65.5 49 55.1
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.1e-09 64.7 60 50.0
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 1.8e-08 63.2 102 34.3
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 3.1e-08 62.4 94 39.4
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 4.0e-08 62.0 59 54.2
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.9e-08 60.8 45 55.6
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 8.9e-08 60.8 45 55.6
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 3.4e-07 58.9 36 66.7
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 3.4e-07 58.9 46 54.3
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.4e-06 54.7 36 58.3


User provided reference genes

Program Settings