Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g092180 Medicago truncatula HOM05D004932 ORTHO05D005622 2.0e-147 525.8 279 100.0
Medtr6g090810 Medicago truncatula HOM05D004932 ORTHO05D005622 3.3e-145 518.5 287 97.2
Medtr6g091780 Medicago truncatula HOM05D004932 ORTHO05D005622 5.8e-142 507.7 302 91.1
Ca_25616_v3 Cicer arietinum L. HOM05D004932 ORTHO05D005622 8.3e-133 477.2 303 84.2
Lj2g0005770 Lotus japonicus HOM05D004932 ORTHO05D005622 3.5e-115 418.7 300 75.7
TPR.G35493 Trifolium pratense HOM05D004932 ORTHO05D005622 1.9e-113 412.9 306 78.4
Glyma.07G128200 Glycine max HOM05D004932 ORTHO05D005622 3.6e-112 408.7 303 73.3
Psat1g049760 Pisum sativum HOM05D004932 ORTHO05D005622 5.8e-110 401.4 302 74.2
Lalb_Chr24g0393881 Lupinus albus HOM05D004932 ORTHO05D005622 4.9e-109 398.3 305 73.4
arahy.Tifrunner.gnm1.ann1.NAI4LE Arachis hypogaea HOM05D004932 ORTHO05D005622 1.0e-106 390.6 305 70.5
Glyma.01G003700 Glycine max HOM05D004932 ORTHO05D005622 3.9e-106 388.7 302 70.2
arahy.Tifrunner.gnm1.ann1.RRYY0T Arachis hypogaea HOM05D004932 ORTHO05D005622 1.5e-105 386.7 306 70.6
Phvul.004G172100 Phaseolus vulgaris HOM05D004932 ORTHO05D005622 1.2e-102 377.1 302 69.5
VMungo0464G1844 Vigna mungo HOM05D004932 ORTHO05D005622 1.3e-101 373.6 303 68.3
CANSAT56G0365 Cannabis sativa HOM05D004932 ORTHO05D005622 1.0e-98 364.0 294 67.7
Actinidia29889 Actinidia chinensis HOM05D004932 ORTHO05D005622 5.1e-98 361.7 296 65.5
Duzib150G0148 Durio zibethinus HOM05D004932 ORTHO05D005622 8.7e-98 360.9 303 66.3
Dinv42295 Davidia involucrata HOM05D004932 ORTHO05D005622 5.6e-97 358.2 297 63.0
Lalb_Chr14g0375311 Lupinus albus HOM05D004932 ORTHO05D005622 1.3e-96 357.1 300 64.3
MSTRG.10579 Avicennia marina HOM05D004932 ORTHO05D005622 4.8e-96 355.1 298 64.8
Hma1.2p1_0798F.1_g219580 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 4.8e-96 355.1 298 61.7
Duzib168G1170 Durio zibethinus HOM05D004932 ORTHO05D005622 6.2e-96 354.8 298 66.1
Nitab4.5_0007297g0010 Nicotiana tabacum HOM05D004932 ORTHO05D005622 6.2e-96 354.8 293 64.8
Dinv36742 Davidia involucrata HOM05D004932 ORTHO05D005622 2.6e-94 349.4 294 64.6
Gohir.D07G010400 Gossypium hirsutum HOM05D004932 ORTHO05D005622 2.6e-94 349.4 299 64.5
Gorai.001G010800 Gossypium raimondii HOM05D004932 ORTHO05D005622 2.6e-94 349.4 299 64.5
Nitab4.5_0000713g0230 Nicotiana tabacum HOM05D004932 ORTHO05D005622 1.3e-93 347.1 293 63.8
Thecc.09G093000 Theobroma cacao HOM05D004932 ORTHO05D005622 3.8e-93 345.5 303 64.4
Medtr6g092150 Medicago truncatula HOM05D004932 ORTHO05D005622 4.9e-93 345.1 323 67.5
Gohir.A07G010100 Gossypium hirsutum HOM05D004932 ORTHO05D005622 1.1e-92 344.0 299 63.9
PGR142G3354 Punica granatum HOM05D004932 ORTHO05D005622 2.5e-92 342.8 304 61.5
FAN19G2121 Fragaria x ananassa HOM05D004932 ORTHO05D005622 3.2e-92 342.4 297 65.3
Nn6g35421 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.2e-92 342.4 300 62.3
PGSC0003DMG400008434 Solanum tuberosum HOM05D004932 ORTHO05D005622 5.5e-92 341.7 299 62.9
FvH4_1g07000 Fragaria vesca HOM05D004932 ORTHO05D005622 7.1e-92 341.3 297 62.6
FAN23G2709 Fragaria x ananassa HOM05D004932 ORTHO05D005622 9.3e-92 340.9 297 65.0
FAN26G1352 Fragaria x ananassa HOM05D004932 ORTHO05D005622 9.3e-92 340.9 297 64.6
FAN26G3436 Fragaria x ananassa HOM05D004932 ORTHO05D005622 9.3e-92 340.9 297 64.6
SalBow1G2721 Salvia bowleyana HOM05D004932 ORTHO05D005622 2.1e-91 339.7 298 59.7
QL02p063162 Quercus lobata HOM05D004932 ORTHO05D005622 3.5e-91 339.0 304 63.8
FAN28G1050 Fragaria x ananassa HOM05D004932 ORTHO05D005622 6.0e-91 338.2 297 64.3
arahy.Tifrunner.gnm1.ann1.E8KE86 Arachis hypogaea HOM05D004932 ORTHO05D005622 3.9e-90 335.5 307 63.5
Aqoxy7G01262 Aquilegia oxysepala HOM05D004932 ORTHO05D005622 5.1e-90 335.1 295 60.3
CAN.G1837.4 Capsicum annuum HOM05D004932 ORTHO05D005622 1.1e-89 334.0 302 60.6
CiPaw.03G218800 Carya illinoinensis HOM05D004932 ORTHO05D005622 2.5e-89 332.8 305 62.3
Eucgr.C00917 Eucalyptus grandis HOM05D004932 ORTHO05D005622 3.3e-89 332.4 294 60.5
Sopen07g015910 Solanum pennellii HOM05D004932 ORTHO05D005622 4.3e-89 332.0 299 61.9
MD15G1203900 Malus domestica HOM05D004932 ORTHO05D005622 5.7e-89 331.6 295 63.4
TWI63G1476 Tripterygium wilfordii HOM05D004932 ORTHO05D005622 5.7e-89 331.6 299 61.2
Haze_25884 Corylus avellana HOM05D004932 ORTHO05D005622 6.3e-88 328.2 304 62.5
Lj7C672T15 Lonicera japonica HOM05D004932 ORTHO05D005622 6.3e-88 328.2 299 59.9
GSVIVG01015235001 Vitis vinifera HOM05D004932 ORTHO05D005622 1.1e-87 327.4 300 60.3
Solyc07g032250.4 Solanum lycopersicum HOM05D004932 ORTHO05D005622 1.4e-87 327.0 299 61.2
Manes.14G155500 Manihot esculenta HOM05D004932 ORTHO05D005622 6.9e-87 324.7 300 59.3
Cc06_g11080 Coffea canephora HOM05D004932 ORTHO05D005622 1.5e-86 323.6 300 61.3
Atru.chr7.1544 Acer truncatum HOM05D004932 ORTHO05D005622 2.0e-86 323.2 305 61.3
CsaV3_1G040210 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-85 320.5 298 62.1
CsaV3_UNG060480 Cucumis sativus L. HOM05D004932 ORTHO05D005622 1.3e-85 320.5 298 62.1
MELO3C015448.2 Cucumis melo HOM05D004932 ORTHO05D005622 1.7e-85 320.1 297 60.9
COL.COLO4_18228 Corchorus olitorius HOM05D004932 ORTHO05D005622 2.9e-85 319.3 303 59.7
Manes.16G104000 Manihot esculenta HOM05D004932 ORTHO05D005622 2.9e-85 319.3 297 57.9
CSS0009775 Camellia sinensis var. sinensis HOM05D004932 ORTHO05D005622 5.0e-85 318.5 298 60.1
arahy.Tifrunner.gnm1.ann1.XF40UC Arachis hypogaea HOM05D004932 ORTHO05D005622 2.5e-84 316.2 298 62.8
THA.LOC104814605 Tarenaya hassleriana HOM05D004932 ORTHO05D005622 3.2e-84 315.8 288 59.0
vmacro06275 Vaccinium macrocarpon HOM05D004932 ORTHO05D005622 4.2e-84 315.5 293 61.1
Prupe.7G213500 Prunus persica HOM05D004932 ORTHO05D005622 1.3e-82 310.5 294 59.9
EL10Ac8g19275 Beta vulgaris HOM05D004932 ORTHO05D005622 2.3e-82 309.7 299 57.5
AT4G29520 Arabidopsis thaliana HOM05D004932 ORTHO05D005622 5.1e-82 308.5 299 60.2
RcHm_v2.0_Chr2g0092951 Rosa chinensis HOM05D004932 ORTHO05D005622 1.1e-81 307.4 294 61.2
ATR0789G094 Amborella trichopoda HOM05D004932 ORTHO05D005622 1.9e-81 306.6 288 53.8
Carub.0007s1103 Capsella rubella HOM05D004932 ORTHO05D005622 1.9e-81 306.6 300 59.0
MD02G1074400 Malus domestica HOM05D004932 ORTHO05D005622 2.5e-81 306.2 295 61.4
Oeu000325.1 Olea europaea HOM05D001440 ORTHO05D005622 4.3e-81 305.4 240 68.8
AL7G22880 Arabidopsis lyrata HOM05D004932 ORTHO05D005622 7.4e-81 304.7 293 59.4
PSO210G2479 Papaver somniferum HOM05D004932 ORTHO05D005622 1.3e-80 303.9 297 57.2
A01p08520 Brassica napus HOM05D004932 ORTHO05D005622 1.1e-79 300.8 294 56.8
PSO210G4737 Papaver somniferum HOM05D004932 ORTHO05D005622 1.8e-79 300.1 297 58.9
BcaC01g01175 Brassica carinata HOM05D004932 ORTHO05D005622 3.1e-79 299.3 311 57.9
A08p19620 Brassica napus HOM05D004932 ORTHO05D005622 3.1e-79 299.3 309 58.3
Thhalv10025804m.g Eutrema salsugineum HOM05D004932 ORTHO05D005622 3.1e-79 299.3 292 56.2
ClCG03G015800 Citrullus lanatus HOM05D004932 ORTHO05D005622 4.1e-79 298.9 296 58.4
unitig_78.g29619 Utricularia gibba HOM05D004932 ORTHO05D005622 5.3e-79 298.5 256 60.2
Ciclev10009015m.g Citrus clementina HOM05D004932 ORTHO05D005622 6.9e-79 298.1 295 58.0
C01p09950 Brassica napus HOM05D004932 ORTHO05D005622 9.1e-79 297.7 307 57.3
BolC1t00957H Brassica oleracea HOM05D004932 ORTHO05D005622 9.1e-79 297.7 307 57.3
BraA08t33920Z Brassica rapa HOM05D004932 ORTHO05D005622 1.5e-78 297.0 309 57.9
Cpa.g.sc7.248 Carica papaya HOM05D004932 ORTHO05D005622 2.0e-78 296.6 301 58.5
BolC3t21234H Brassica oleracea HOM05D004932 ORTHO05D005622 2.6e-78 296.2 309 57.9
ECA234G2984 Erigeron canadensis HOM05D004932 ORTHO05D005622 4.5e-78 295.4 278 57.6
BcaC09g51740 Brassica carinata HOM05D004932 ORTHO05D005622 1.0e-77 294.3 293 58.7
C03p89240 Brassica napus HOM05D004932 ORTHO05D005622 1.3e-77 293.9 309 57.6
BraA01t00801Z Brassica rapa HOM05D004932 ORTHO05D005622 1.7e-77 293.5 302 55.0
Sc18g0001850 Simmondsia chinensis HOM05D004932 ORTHO05D005622 2.2e-77 293.1 249 63.9
Potri.018G067300 Populus trichocarpa HOM05D004932 ORTHO05D005622 6.5e-77 291.6 295 55.9
Sabra18G0059800 Salix brachista HOM05D004932 ORTHO05D005622 4.2e-76 288.9 295 55.9
Peaxi162Scf00444g00617 Petunia axillaris HOM05D004932 ORTHO05D005622 1.2e-75 287.3 298 54.4
Sed0008469 Sechium edule HOM05D004932 ORTHO05D005622 2.1e-75 286.6 216 69.4
unitig_749.g14227 Utricularia gibba HOM05D004932 ORTHO05D005622 2.1e-75 286.6 293 53.2
Migut.K00580 Erythranthe guttata HOM05D004932 ORTHO05D005622 3.6e-75 285.8 299 55.5
Zm00001eb376850 Zea mays HOM05D004932 ORTHO05D005622 7.9e-75 284.6 302 54.3
SGA_v2.0_scaffold10G05207 Striga asiatica HOM05D004932 ORTHO05D005622 1.8e-74 283.5 354 48.0
BcaB03g12610 Brassica carinata HOM05D004932 ORTHO05D005622 5.1e-74 282.0 308 55.8
Os06g0150400 Oryza sativa ssp. japonica HOM05D004932 ORTHO05D005622 5.1e-74 282.0 279 57.3
Sp7g27380 Schrenkiella parvula HOM05D004932 ORTHO05D005622 5.1e-74 282.0 292 57.2
Lsat_1_v5_gn_5_145840 Lactuca sativa HOM05D004932 ORTHO05D005622 1.5e-73 280.4 296 55.4
Rhsim03G0234400 Rhododendron simsii HOM05D004932 ORTHO05D005622 1.5e-73 280.4 296 57.1
CARHR237350 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.8e-72 276.2 301 54.8
CDE05G0556 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 3.7e-72 275.8 299 53.8
HanXRQChr10g0319131 Helianthus annuus HOM05D004932 ORTHO05D005622 6.9e-71 271.6 298 52.7
DCAR_011989 Daucus carota HOM05D004932 ORTHO05D005622 3.8e-69 265.8 265 60.0
AUR62027447 Chenopodium quinoa HOM05D004932 ORTHO05D005622 1.6e-67 260.4 299 47.5
AUR62031253 Chenopodium quinoa HOM05D004932 ORTHO05D005622 3.6e-67 259.2 299 46.5
HPP92_004560 Vanilla planifolia HOM05D004932 ORTHO05D005622 8.8e-66 254.6 301 51.2
CDE05G1139 Ceratophyllum demersum HOM05D004932 ORTHO05D005622 4.4e-65 252.3 258 57.0
Aa31LG2G20960 Aethionema arabicum HOM05D004932 ORTHO05D005622 7.4e-65 251.5 305 51.5
SEGI_24488 Sequoiadendron giganteum HOM05D004932 ORTHO05D005622 1.7e-64 250.4 291 47.8
Ah.09g228480 Amaranthus hybridus HOM05D004932 ORTHO05D005622 1.8e-63 246.9 298 46.0
TAR365G0154 Trochodendron aralioides HOM05D004932 ORTHO05D005622 4.2e-60 235.7 242 54.1
Cfa003116 Carpinus fangiana HOM05D004932 ORTHO05D005622 1.5e-57 227.3 231 61.0
HanXRQChr12g0355371 Helianthus annuus HOM05D004932 ORTHO05D005622 5.7e-57 225.3 272 50.4
Pp3c4_19450 Physcomitrium patens HOM05D004932 ORTHO05D005622 1.8e-50 203.8 294 44.6
arahy.Tifrunner.gnm1.ann1.GR1INA Arachis hypogaea HOM05D004932 ORTHO05D005622 4.0e-50 202.6 186 59.1
Mapoly0075s0048 Marchantia polymorpha HOM05D004932 ORTHO05D005622 1.2e-49 201.1 291 44.3
SHI02816 Sapria himalayana HOM05D004932 ORTHO05D005622 2.7e-46 189.9 223 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2022 Anthoceros agrestis HOM05D004932 ORTHO05D005622 2.3e-42 176.8 205 49.3
Cc06_g18040 Coffea canephora HOM05D004932 ORTHO05D005622 6.3e-40 168.7 147 61.9
unitig_26.g9168 Utricularia gibba HOM05D004932 ORTHO05D005622 7.8e-38 161.8 111 69.4
Oeu037599.1 Olea europaea HOM05D004932 ORTHO05D005622 2.5e-36 156.8 271 42.8
SMO361G0136 Selaginella moellendorffii HOM05D004932 ORTHO05D005622 1.2e-35 154.5 310 36.1
Hma1.2p1_0798F.1_g219570 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-32 143.3 135 57.0
Hma1.2p1_1074F.1_g254276 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 2.9e-32 143.3 135 57.0
CBR_g8029 Chara braunii HOM05D004932 ORTHO05D005622 1.6e-30 137.5 188 40.4
Medtr6g091840 Medicago truncatula HOM05D004932 ORTHO05D005622 7.3e-28 128.6 133 65.4
arahy.Tifrunner.gnm1.ann1.Y4MEFZ Arachis hypogaea HOM05D004932 ORTHO05D005622 9.5e-28 128.3 109 60.6
Oeu037598.1 Olea europaea HOM05D004932 ORTHO05D005622 6.8e-18 95.5 98 65.3
PRCOL_00005979 Prasinoderma coloniale HOM05D004932 ORTHO05D005622 8.9e-18 95.1 198 28.8
CARHR109770 Cardamine hirsuta HOM05D004932 ORTHO05D005622 2.0e-17 94.0 96 56.2
RcHm_v2.0_Chr5g0016971 Rosa chinensis HOM05D004932 ORTHO05D005622 3.4e-17 93.2 64 70.3
RcHm_v2.0_Chr4g0402141 Rosa chinensis HOM05D004932 ORTHO05D005622 1.3e-16 91.3 62 71.0
Medtr6g077350 Medicago truncatula HOM05D004932 ORTHO05D005622 2.4e-15 87.0 43 97.7
MCO04G519 Micromonas commoda HOM05D004932 ORTHO05D005622 2.7e-14 83.6 206 28.2
arahy.Tifrunner.gnm1.ann1.XYZ5FS Arachis hypogaea HOM05D004932 ORTHO05D005622 2.3e-13 80.5 45 80.0
CiPaw.05G072200 Carya illinoinensis HOM05D004932 ORTHO05D005622 3.9e-13 79.7 50 76.0
unitig_26.g9167 Utricularia gibba HOM05D004932 ORTHO05D005622 5.1e-13 79.3 121 47.9
Hma1.2p1_1586F.1_g292210 Hydrangea macrophylla HOM05D004932 ORTHO05D005622 6.6e-13 79.0 52 69.2
Cre03.g151700 Chlamydomonas reinhardtii HOM05D004932 ORTHO05D005622 4.3e-12 76.3 193 28.0
arahy.Tifrunner.gnm1.ann1.P1T2M1 Arachis hypogaea HOM05D000368 ORTHO05D000289 4.7e-11 72.8 49 71.4
Nn3g21874 Nelumbo nucifera HOM05D004932 ORTHO05D005622 8.1e-11 72.0 45 66.7
Nn2g13205 Nelumbo nucifera HOM05D004932 ORTHO05D005622 3.1e-10 70.1 45 66.7
TAR636G2165 Trochodendron aralioides HOM05D004932 ORTHO05D005622 8.9e-10 68.6 56 60.7
Medtr6g091870 Medicago truncatula HOM05D004932 ORTHO05D264341 2.7e-06 57.0 78 64.1


User provided reference genes

Program Settings