Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 4.1e-130 468.0 225 100.0
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 1.3e-51 207.2 115 88.7
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 1.9e-50 203.4 115 87.8
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 4.3e-47 192.2 115 82.6
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 1.6e-46 190.3 115 81.7
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 2.1e-46 189.9 115 79.1
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 1.1e-45 187.6 115 76.5
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 1.8e-45 186.8 115 78.3
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 6.9e-45 184.9 115 77.4
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 4.5e-44 182.2 156 62.2
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 1.7e-43 180.3 115 74.8
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 1.1e-42 177.6 115 73.9
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.4e-42 177.2 115 73.9
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.2e-41 174.1 115 71.3
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 5.1e-40 168.7 161 55.9
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 6.7e-40 168.3 115 67.0
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 6.7e-40 168.3 115 65.2
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 6.7e-40 168.3 115 65.2
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 6.7e-40 168.3 115 67.8
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 8.7e-40 167.9 115 67.0
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 1.1e-39 167.5 115 65.2
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 1.1e-39 167.5 115 68.7
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 1.1e-39 167.5 115 67.0
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 1.5e-39 167.2 115 67.8
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 1.9e-39 166.8 115 67.0
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 1.9e-39 166.8 115 67.0
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 1.9e-39 166.8 115 67.0
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 3.3e-39 166.0 115 67.8
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 3.3e-39 166.0 115 67.8
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 4.3e-39 165.6 113 67.3
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 4.3e-39 165.6 114 68.4
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 4.3e-39 165.6 115 67.0
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 4.3e-39 165.6 115 67.0
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 5.7e-39 165.2 114 66.7
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 5.7e-39 165.2 115 67.0
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 7.4e-39 164.9 115 67.0
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 9.6e-39 164.5 115 67.0
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 9.6e-39 164.5 115 67.8
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.3e-38 164.1 115 66.1
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 1.3e-38 164.1 115 66.1
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 1.3e-38 164.1 115 65.2
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 1.3e-38 164.1 115 66.1
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 1.3e-38 164.1 186 47.3
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 1.3e-38 164.1 115 66.1
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 1.6e-38 163.7 115 66.1
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 1.6e-38 163.7 115 66.1
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 1.6e-38 163.7 115 66.1
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 1.6e-38 163.7 115 66.1
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.6e-38 163.7 115 66.1
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 1.6e-38 163.7 147 55.8
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 2.1e-38 163.3 115 66.1
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 2.8e-38 162.9 115 66.1
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 2.8e-38 162.9 115 66.1
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 2.8e-38 162.9 115 67.0
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.8e-38 162.9 115 66.1
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 3.7e-38 162.5 115 65.2
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 3.7e-38 162.5 115 65.2
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 3.7e-38 162.5 115 67.0
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 3.7e-38 162.5 115 64.3
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 6.3e-38 161.8 115 66.1
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 6.3e-38 161.8 115 64.3
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 8.2e-38 161.4 115 65.2
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 8.2e-38 161.4 115 63.5
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 8.2e-38 161.4 115 63.5
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 8.2e-38 161.4 115 62.6
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 1.4e-37 160.6 171 49.7
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 1.4e-37 160.6 115 64.3
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 1.8e-37 160.2 115 63.5
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 2.4e-37 159.8 115 64.3
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 2.4e-37 159.8 115 67.8
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 3.1e-37 159.5 115 65.2
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.1e-37 159.1 115 65.2
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 5.3e-37 158.7 111 66.7
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 5.3e-37 158.7 115 65.2
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 5.3e-37 158.7 115 65.2
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 5.3e-37 158.7 115 64.3
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 6.9e-37 158.3 115 63.5
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 9.0e-37 157.9 111 64.0
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 9.0e-37 157.9 115 65.2
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 1.2e-36 157.5 115 64.3
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.5e-36 157.1 91 76.9
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 1.5e-36 157.1 187 47.1
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 1.5e-36 157.1 115 64.3
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 2.0e-36 156.8 115 63.5
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 2.6e-36 156.4 137 55.5
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 5.9e-36 155.2 115 64.3
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 7.6e-36 154.8 114 63.2
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.0e-35 154.5 113 63.7
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.0e-35 154.5 92 75.0
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 1.0e-35 154.5 127 55.1
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.7e-35 153.7 115 60.9
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 5.0e-35 152.1 120 59.2
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 8.4e-35 151.4 165 50.9
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 1.1e-34 151.0 115 59.1
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 1.9e-34 150.2 115 62.6
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 2.5e-34 149.8 113 64.6
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 2.5e-34 149.8 115 60.0
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 4.2e-34 149.1 116 59.5
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 4.2e-34 149.1 109 63.3
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 1.6e-33 147.1 120 60.0
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 1.6e-33 147.1 115 61.7
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 3.5e-33 146.0 114 59.6
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.6e-33 145.6 136 54.4
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 6.1e-33 145.2 143 52.4
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 1.9e-31 140.2 137 53.3
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 3.3e-31 139.4 100 63.0
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 5.7e-31 138.7 119 58.0
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 4.8e-30 135.6 113 54.9
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 3.1e-29 132.9 103 57.3
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 2.2e-27 126.7 117 54.7
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 8.5e-27 124.8 100 57.0
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 7.2e-26 121.7 97 58.8
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 2.7e-25 119.8 122 52.5
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 4.3e-23 112.5 93 57.0
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 2.2e-22 110.2 82 57.3
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 2.8e-22 109.8 107 50.5
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 3.1e-21 106.3 71 76.1
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 3.1e-21 106.3 85 55.3
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 5.0e-19 99.0 115 45.2
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.9e-18 97.1 71 64.8
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 7.2e-18 95.1 71 64.8
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 4.7e-17 92.4 71 60.6
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 6.1e-17 92.0 72 65.3
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 3.0e-16 89.7 90 54.4
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 9.7e-15 84.7 77 49.4
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 9.7e-15 84.7 47 70.2
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 7.0e-13 78.6 80 45.0
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 2.5e-10 70.1 60 58.3
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 4.7e-09 65.9 57 56.1
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.6e-07 60.1 43 58.1


User provided reference genes

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