Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g071520 Medicago truncatula HOM05D005819 ORTHO05D006780 1.7e-100 369.4 189 100.0
Medtr7g087030 Medicago truncatula HOM05D005819 ORTHO05D006780 2.7e-95 352.1 189 96.3
TPR.G7847 Trifolium pratense HOM05D005819 ORTHO05D006780 5.9e-82 307.8 189 84.1
Ca_03448_v3 Cicer arietinum L. HOM05D005819 ORTHO05D006780 2.8e-76 288.9 189 81.5
Lj1g0005576 Lotus japonicus HOM05D005819 ORTHO05D006780 8.3e-68 260.8 199 70.4
Lalb_Chr22g0358491 Lupinus albus HOM05D005819 ORTHO05D006780 3.5e-66 255.4 198 69.7
Glyma.19G118800 Glycine max HOM05D005819 ORTHO05D006780 6.0e-66 254.6 193 71.0
Glyma.03G007300 Glycine max HOM05D005819 ORTHO05D006780 1.1e-64 250.4 198 69.2
arahy.Tifrunner.gnm1.ann1.7T7QMX Arachis hypogaea HOM05D005819 ORTHO05D006780 8.0e-63 244.2 195 68.7
VMungo0647G1299 Vigna mungo HOM05D005819 ORTHO05D006780 3.1e-62 242.3 189 69.3
Phvul.001G107000 Phaseolus vulgaris HOM05D005819 ORTHO05D006780 5.8e-61 238.0 199 65.3
VMungo1383G0784 Vigna mungo HOM05D005819 ORTHO05D006780 1.7e-60 236.5 199 64.8
GSVIVG01000441001 Vitis vinifera HOM05D005819 ORTHO05D006780 8.6e-57 224.2 196 63.3
Hma1.2p1_1090F.1_g255750 Hydrangea macrophylla HOM05D005819 ORTHO05D006780 1.1e-56 223.8 195 62.1
Gorai.005G207400 Gossypium raimondii HOM05D005819 ORTHO05D006780 4.3e-56 221.9 194 59.3
Gohir.A03G161900 Gossypium hirsutum HOM05D005819 ORTHO05D006780 7.3e-56 221.1 194 59.3
CiPaw.03G166600 Carya illinoinensis HOM05D005819 ORTHO05D006780 2.8e-55 219.2 191 61.8
Gohir.D02G185101 Gossypium hirsutum HOM05D005819 ORTHO05D006780 2.8e-55 219.2 194 58.8
Cc05_g05680 Coffea canephora HOM05D005819 ORTHO05D006780 6.2e-55 218.0 191 59.7
MELO3C013522.2 Cucumis melo HOM05D005819 ORTHO05D006780 8.1e-55 217.6 193 59.6
Manes.18G113901 Manihot esculenta HOM05D005819 ORTHO05D006780 1.8e-54 216.5 197 62.4
AUR62040308 Chenopodium quinoa HOM05D005819 ORTHO05D006780 2.3e-54 216.1 166 65.1
Duzib248G0701 Durio zibethinus HOM05D005819 ORTHO05D006780 3.1e-54 215.7 191 58.6
Hund06769 Selenicereus undatus HOM05D005819 ORTHO05D006780 3.1e-54 215.7 142 70.4
Haze_13026 Corylus avellana HOM05D005819 ORTHO05D006780 6.8e-54 214.5 191 58.6
Prupe.3G227000 Prunus persica HOM05D005819 ORTHO05D006780 6.8e-54 214.5 192 60.4
PSO210G2402 Papaver somniferum HOM05D005819 ORTHO05D006780 8.9e-54 214.2 139 71.2
Sed0001645 Sechium edule HOM05D005819 ORTHO05D006780 8.9e-54 214.2 195 59.5
CSS0044572 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 1.5e-53 213.4 192 61.5
CANSAT21G1768 Cannabis sativa HOM05D005819 ORTHO05D006780 2.0e-53 213.0 197 60.4
PGSC0003DMG400026152 Solanum tuberosum HOM05D005819 ORTHO05D006780 2.0e-53 213.0 186 59.7
arahy.Tifrunner.gnm1.ann1.Q06U4P Arachis hypogaea HOM05D005819 ORTHO05D006780 2.6e-53 212.6 245 52.7
PSO170G6190 Papaver somniferum HOM05D005819 ORTHO05D006780 2.6e-53 212.6 139 71.2
Sopen07g026700 Solanum pennellii HOM05D005819 ORTHO05D006780 2.6e-53 212.6 186 59.7
FAN05G1257 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.4e-53 211.8 190 60.5
Solyc07g053150.3 Solanum lycopersicum HOM05D005819 ORTHO05D006780 4.4e-53 211.8 186 59.1
Aqoxy7G03432 Aquilegia oxysepala HOM05D005819 ORTHO05D006780 7.5e-53 211.1 188 58.5
AUR62007448 Chenopodium quinoa HOM05D005819 ORTHO05D006780 1.3e-52 210.3 164 65.2
CsaV3_6G012280 Cucumis sativus L. HOM05D005819 ORTHO05D006780 1.3e-52 210.3 191 58.6
FvH4_6g44280 Fragaria vesca HOM05D005819 ORTHO05D006780 1.3e-52 210.3 190 60.0
FAN14G4258 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.3e-52 210.3 190 60.0
Nitab4.5_0004360g0020 Nicotiana tabacum HOM05D005819 ORTHO05D006780 2.2e-52 209.5 195 58.5
CAN.G640.15 Capsicum annuum HOM05D005819 ORTHO05D006780 2.9e-52 209.1 186 57.5
Ciclev10016814m.g Citrus clementina HOM05D005819 ORTHO05D006780 2.9e-52 209.1 190 60.5
Nn2g10488 Nelumbo nucifera HOM05D005819 ORTHO05D006780 2.9e-52 209.1 191 59.2
Psat3g085640 Pisum sativum HOM05D005819 ORTHO05D006780 2.9e-52 209.1 145 77.9
PGR142G2655 Punica granatum HOM05D005819 ORTHO05D006780 2.9e-52 209.1 194 58.8
Nitab4.5_0006653g0030 Nicotiana tabacum HOM05D005819 ORTHO05D006780 3.7e-52 208.8 195 57.4
TWI18G0421 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 3.7e-52 208.8 197 58.4
Atru.chr6.3097 Acer truncatum HOM05D005819 ORTHO05D006780 1.1e-51 207.2 188 56.9
Eucgr.K00886 Eucalyptus grandis HOM05D005819 ORTHO05D006780 1.1e-51 207.2 192 62.0
Ah.12g056190 Amaranthus hybridus HOM05D001579 ORTHO05D006780 1.9e-51 206.5 185 57.8
MD17G1087700 Malus domestica HOM05D005819 ORTHO05D006780 2.4e-51 206.1 199 57.8
Medtr6g071700 Medicago truncatula HOM05D005819 ORTHO05D006780 2.4e-51 206.1 115 88.7
Sc12g0002590 Simmondsia chinensis HOM05D005819 ORTHO05D006780 3.2e-51 205.7 140 67.9
Thecc.02G167000 Theobroma cacao HOM05D005819 ORTHO05D006780 3.2e-51 205.7 189 57.7
FAN09G3032 Fragaria x ananassa HOM05D005819 ORTHO05D006780 4.1e-51 205.3 190 58.9
RcHm_v2.0_Chr2g0161141 Rosa chinensis HOM05D005819 ORTHO05D006780 5.4e-51 204.9 192 59.4
ClCG02G011330 Citrullus lanatus HOM05D005819 ORTHO05D006780 7.1e-51 204.5 174 60.3
HanXRQChr17g0543121 Helianthus annuus HOM05D005819 ORTHO05D006780 1.6e-50 203.4 181 60.2
EL10Ac5g12980 Beta vulgaris HOM05D005819 ORTHO05D006780 2.7e-50 202.6 172 61.0
TAR626G0084 Trochodendron aralioides HOM05D005819 ORTHO05D006780 3.5e-50 202.2 198 55.6
SGA_v2.0_scaffold159G37608 Striga asiatica HOM05D005819 ORTHO05D006780 1.3e-49 200.3 191 56.5
EL10Ac2g02755 Beta vulgaris HOM05D005819 ORTHO05D006780 1.7e-49 199.9 161 63.4
SHI10263 Sapria himalayana HOM05D005819 ORTHO05D006780 2.3e-49 199.5 142 66.2
THA.LOC104806805 Tarenaya hassleriana HOM05D005819 ORTHO05D006780 3.0e-49 199.1 197 57.4
ECA246G1767 Erigeron canadensis HOM05D005819 ORTHO05D006780 3.9e-49 198.7 137 66.4
SalBow1G3361 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.9e-49 198.7 190 56.3
SalBow1G8148 Salvia bowleyana HOM05D005819 ORTHO05D006780 3.9e-49 198.7 190 56.3
MSTRG.14168 Avicennia marina HOM05D005819 ORTHO05D006780 6.6e-49 198.0 191 56.0
BcaC04g23988 Brassica carinata HOM05D005819 ORTHO05D006780 6.6e-49 198.0 125 71.2
A09p02550 Brassica napus HOM05D005819 ORTHO05D006780 6.6e-49 198.0 125 71.2
Lsat_1_v5_gn_3_41801 Lactuca sativa HOM05D005819 ORTHO05D006780 1.1e-48 197.2 197 56.9
Sabra13G0120900 Salix brachista HOM05D005819 ORTHO05D006780 1.1e-48 197.2 196 57.1
C03p36930 Brassica napus HOM05D005819 ORTHO05D006780 1.5e-48 196.8 142 66.2
BraA09t35901Z Brassica rapa HOM05D005819 ORTHO05D006780 1.5e-48 196.8 125 71.2
FAN02G1820 Fragaria x ananassa HOM05D005819 ORTHO05D006780 1.9e-48 196.4 211 54.0
BolC3t16000H Brassica oleracea HOM05D005819 ORTHO05D006780 2.5e-48 196.1 142 66.2
Migut.F00120 Erythranthe guttata HOM05D005819 ORTHO05D006780 2.5e-48 196.1 200 55.5
Sp6g03280 Schrenkiella parvula HOM05D005819 ORTHO05D006780 2.5e-48 196.1 125 71.2
Rhsim04G0058700 Rhododendron simsii HOM05D005819 ORTHO05D006780 9.5e-48 194.1 180 58.9
Thhalv10028999m.g Eutrema salsugineum HOM05D005819 ORTHO05D006780 1.2e-47 193.7 164 59.1
Potri.013G150400 Populus trichocarpa HOM05D005819 ORTHO05D006780 1.2e-47 193.7 196 56.6
BraA03t12233Z Brassica rapa HOM05D005819 ORTHO05D006780 2.8e-47 192.6 172 57.0
CARHR251690 Cardamine hirsuta HOM05D005819 ORTHO05D006780 2.8e-47 192.6 186 57.0
A03p30520 Brassica napus HOM05D005819 ORTHO05D006780 1.1e-46 190.7 184 55.4
SalBow6G6406 Salvia bowleyana HOM05D005819 ORTHO05D006780 1.4e-46 190.3 190 54.7
BcaC01g06695 Brassica carinata HOM05D005819 ORTHO05D006780 4.0e-46 188.7 191 55.5
Peaxi162Scf00007g01734 Petunia axillaris HOM05D005819 ORTHO05D006780 4.0e-46 188.7 191 55.0
SGA_v2.0_scaffold49G18319 Striga asiatica HOM05D005819 ORTHO05D006780 5.2e-46 188.3 210 51.4
AL6G49690 Arabidopsis lyrata HOM05D005819 ORTHO05D006780 1.2e-45 187.2 191 55.0
BcaB01g02514 Brassica carinata HOM05D005819 ORTHO05D006780 1.5e-45 186.8 184 54.9
AT4G03240 Arabidopsis thaliana HOM05D005819 ORTHO05D006780 2.0e-45 186.4 190 55.8
Aa31LG5G2740 Aethionema arabicum HOM05D005819 ORTHO05D006780 2.6e-45 186.0 217 51.6
Carub.0006s3382 Capsella rubella HOM05D005819 ORTHO05D006780 9.9e-45 184.1 191 53.4
QL08p035991 Quercus lobata HOM05D005819 ORTHO05D006780 9.9e-45 184.1 224 49.6
unitig_749.g13948 Utricularia gibba HOM05D005819 ORTHO05D006780 1.7e-44 183.3 183 53.0
CSS0036944 Camellia sinensis var. sinensis HOM05D005819 ORTHO05D006780 4.9e-44 181.8 145 61.4
Zm00001eb151360 Zea mays HOM05D005819 ORTHO05D006780 4.9e-44 181.8 136 61.0
DCAR_009705 Daucus carota HOM05D005819 ORTHO05D006780 2.4e-43 179.5 217 49.8
SEGI_37806 Sequoiadendron giganteum HOM05D005819 ORTHO05D006780 2.4e-43 179.5 144 59.7
CDE02G1488 Ceratophyllum demersum HOM05D005819 ORTHO05D006780 2.3e-41 172.9 113 71.7
CDE09G0293 Ceratophyllum demersum HOM05D007034 ORTHO05D006780 6.6e-41 171.4 112 69.6
Oeu037169.1 Olea europaea HOM05D005819 ORTHO05D006780 6.6e-41 171.4 116 67.2
Os01g0783600 Oryza sativa ssp. japonica HOM05D005819 ORTHO05D006780 1.5e-40 170.2 199 50.3
Oeu005644.2 Olea europaea HOM05D005819 ORTHO05D006780 5.6e-40 168.3 116 68.1
CiPaw.04G121300 Carya illinoinensis HOM05D005819 ORTHO05D006780 3.6e-39 165.6 153 55.6
Dinv13856 Davidia involucrata HOM05D005819 ORTHO05D006780 1.5e-37 160.2 151 59.6
Mapoly0009s0241 Marchantia polymorpha HOM05D005819 ORTHO05D006780 3.4e-37 159.1 134 57.5
Pp3c9_21390 Physcomitrium patens HOM05D005819 ORTHO05D006780 6.4e-36 154.8 157 49.7
Zm00001eb034710 Zea mays HOM05D005819 ORTHO05D006780 1.1e-35 154.1 191 45.0
DCAR_021205 Daucus carota HOM05D005819 ORTHO05D006780 1.4e-35 153.7 91 75.8
MD09G1099400 Malus domestica HOM05D005819 ORTHO05D006780 2.7e-34 149.4 129 58.9
RhsimUnG0197800 Rhododendron simsii HOM05D005819 ORTHO05D006780 3.5e-34 149.1 151 56.3
TWI36G1190 Tripterygium wilfordii HOM05D005819 ORTHO05D006780 3.9e-33 145.6 155 57.4
SMO140G0069 Selaginella moellendorffii HOM05D005819 ORTHO05D006780 8.7e-33 144.4 109 59.6
Dinv02570 Davidia involucrata HOM05D005819 ORTHO05D006780 4.8e-31 138.7 142 57.0
Sed0008711 Sechium edule HOM05D005819 ORTHO05D006780 3.1e-30 136.0 89 67.4
vmacro15799 Vaccinium macrocarpon HOM05D005819 ORTHO05D006780 4.0e-30 135.6 152 53.9
AagrBONN_evm.TU.Sc2ySwM_117.2177 Anthoceros agrestis HOM05D005819 ORTHO05D006780 1.5e-29 133.7 109 55.0
BcaB01g01964 Brassica carinata HOM05D005819 ORTHO05D006780 4.5e-29 132.1 93 64.5
CBR_g3856 Chara braunii HOM05D005819 ORTHO05D006780 3.2e-27 125.9 109 51.4
Cre12.g538350 Chlamydomonas reinhardtii HOM05D005819 ORTHO05D006780 6.0e-26 121.7 116 50.9
HanXRQChr04g0112441 Helianthus annuus HOM05D005819 ORTHO05D006780 2.1e-23 113.2 86 65.1
Oeu025479.1 Olea europaea HOM05D005819 ORTHO05D006780 1.1e-22 110.9 73 64.4
PRCOL_00006727 Prasinoderma coloniale HOM05D005819 ORTHO05D006780 3.1e-22 109.4 89 55.1
MCO13G341 Micromonas commoda HOM05D005819 ORTHO05D006780 4.9e-20 102.1 110 43.6
COL.COLO4_13056 Corchorus olitorius HOM05D005819 ORTHO05D006780 2.3e-17 93.2 113 49.6
HPP92_008010 Vanilla planifolia HOM05D005819 ORTHO05D006780 6.7e-17 91.7 156 43.6
ATR1132G123 Amborella trichopoda HOM05D005819 ORTHO05D006780 2.2e-12 76.6 131 42.7
Haze_01489 Corylus avellana HOM05D005819 ORTHO05D006780 3.8e-12 75.9 132 40.2
Cfa024975 Carpinus fangiana HOM05D005819 ORTHO05D006780 1.1e-11 74.3 191 28.8
TAR623G0306 Trochodendron aralioides HOM05D003242 ORTHO05D003593 2.2e-07 60.1 43 58.1
Actinidia30496 Actinidia chinensis HOM05D005819 ORTHO05D006780 9.0e-06 54.7 56 48.2


User provided reference genes

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