Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g068960 Medicago truncatula HOM05D004831 ORTHO05D003975 0.0e+00 1203.3 629 100.0
Ca_24215_v3 Cicer arietinum L. HOM05D004831 ORTHO05D003975 2.2e-242 842.4 635 74.0
Medtr8g467560 Medicago truncatula HOM05D004831 ORTHO05D003975 1.9e-233 812.8 639 72.5
TPR.G31352 Trifolium pratense HOM05D004831 ORTHO05D003975 1.8e-215 753.1 795 58.1
Lj3g0022365 Lotus japonicus HOM05D004831 ORTHO05D003975 3.0e-170 602.8 635 56.9
Glyma.13G360700 Glycine max HOM05D004831 ORTHO05D003975 8.9e-167 591.3 757 48.9
Glyma.15G013200 Glycine max HOM05D004831 ORTHO05D003975 8.6e-162 574.7 755 48.1
Psat4g139520 Pisum sativum HOM05D004831 ORTHO05D003975 7.3e-161 571.6 492 64.6
Lalb_Chr24g0395761 Lupinus albus HOM05D004831 ORTHO05D003975 1.8e-159 567.0 648 53.7
arahy.Tifrunner.gnm1.ann1.5CE7DY Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-155 553.9 607 52.9
Lalb_Chr15g0078831 Lupinus albus HOM05D004831 ORTHO05D003975 2.5e-153 546.6 621 55.2
arahy.Tifrunner.gnm1.ann1.3B4S3M Arachis hypogaea HOM05D004831 ORTHO05D003975 2.2e-141 506.9 664 48.9
arahy.Tifrunner.gnm1.ann1.Y8U4CK Arachis hypogaea HOM05D004831 ORTHO05D003975 6.4e-141 505.4 664 49.5
arahy.Tifrunner.gnm1.ann1.NQW8T9 Arachis hypogaea HOM05D004831 ORTHO05D003975 1.6e-128 464.2 839 38.9
Phvul.005G172500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.7e-120 436.4 864 38.4
Phvul.002G299500 Phaseolus vulgaris HOM05D004831 ORTHO05D003975 3.6e-107 393.3 619 42.6
QL05p025363 Quercus lobata HOM05D004831 ORTHO05D003975 9.5e-84 315.5 674 38.4
Potri.003G056600 Populus trichocarpa HOM05D004831 ORTHO05D003975 2.3e-77 294.3 689 35.0
Dinv30528 Davidia involucrata HOM05D004831 ORTHO05D003975 5.6e-76 289.7 664 37.3
TWI12G0693 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 8.9e-74 282.3 652 36.2
TWI18G0228 Tripterygium wilfordii HOM05D004831 ORTHO05D003975 1.2e-73 282.0 633 35.1
CANSAT56G2043 Cannabis sativa HOM05D004831 ORTHO05D003975 2.9e-72 277.3 679 34.6
Prupe.3G073700 Prunus persica HOM05D004831 ORTHO05D003975 3.7e-72 276.9 643 33.4
Manes.11G052100 Manihot esculenta HOM05D004831 ORTHO05D003975 5.4e-71 273.1 713 34.4
ClCG09G002300 Citrullus lanatus HOM05D004831 ORTHO05D003975 1.0e-69 268.9 664 35.5
Sed0027172 Sechium edule HOM05D004831 ORTHO05D003975 1.7e-69 268.1 613 37.0
TAR374G0326 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.0e-69 266.5 612 35.3
TAR626G1756 Trochodendron aralioides HOM05D004831 ORTHO05D003975 5.0e-69 266.5 612 35.3
CsaV3_7G033010 Cucumis sativus L. HOM05D004831 ORTHO05D003975 6.6e-69 266.2 647 34.8
Dinv38059 Davidia involucrata HOM05D004831 ORTHO05D003975 3.3e-68 263.8 652 36.0
Sabra03G0032100 Salix brachista HOM05D004831 ORTHO05D003975 5.6e-68 263.1 694 34.4
Atru.chr1.3226 Acer truncatum HOM05D004831 ORTHO05D003975 1.2e-67 261.9 780 30.9
Ciclev10024870m.g Citrus clementina HOM05D004831 ORTHO05D003975 1.2e-67 261.9 784 31.0
Gorai.011G078100 Gossypium raimondii HOM05D004831 ORTHO05D003975 1.2e-67 261.9 664 33.3
Cpa.g.sc10.161 Carica papaya HOM05D004831 ORTHO05D003975 3.6e-67 260.4 809 31.6
Cfa002050 Carpinus fangiana HOM05D004831 ORTHO05D003975 3.6e-67 260.4 832 29.7
Actinidia01793 Actinidia chinensis HOM05D004831 ORTHO05D003975 4.7e-67 260.0 748 32.2
Gohir.D10G072500 Gossypium hirsutum HOM05D004831 ORTHO05D003975 6.2e-67 259.6 670 34.8
Potri.001G178200 Populus trichocarpa HOM05D004831 ORTHO05D003975 3.1e-66 257.3 641 34.5
MELO3C023366.2 Cucumis melo HOM05D004831 ORTHO05D003975 6.8e-66 256.1 665 33.2
Gohir.A10G079000 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.0e-65 254.6 674 33.1
RcHm_v2.0_Chr2g0137511 Rosa chinensis HOM05D004831 ORTHO05D003975 3.4e-65 253.8 653 33.5
CSS0014524 Camellia sinensis var. sinensis HOM05D004831 ORTHO05D003975 1.7e-64 251.5 644 34.2
TAR383G0472 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.7e-64 251.5 634 33.3
GSVIVG01017152001 Vitis vinifera HOM05D004831 ORTHO05D003975 1.4e-63 248.4 827 29.5
Gorai.006G099900 Gossypium raimondii HOM05D004831 ORTHO05D003975 5.0e-61 240.0 672 32.4
Eucgr.F03008 Eucalyptus grandis HOM05D004831 ORTHO05D003975 1.1e-60 238.8 625 33.6
Gohir.A09G084100 Gossypium hirsutum HOM05D004831 ORTHO05D003975 1.5e-60 238.4 663 31.8
Thecc.06G083000 Theobroma cacao HOM05D004831 ORTHO05D003975 1.5e-60 238.4 658 33.0
Gohir.D09G083900 Gossypium hirsutum HOM05D004831 ORTHO05D003975 2.5e-60 237.7 672 32.7
vmacro18933 Vaccinium macrocarpon HOM05D004831 ORTHO05D003975 4.3e-60 236.9 659 32.8
Duzib160G0042 Durio zibethinus HOM05D004831 ORTHO05D003975 1.1e-58 232.3 675 32.9
Lj5A62T33 Lonicera japonica HOM05D004831 ORTHO05D003975 1.1e-58 232.3 667 31.5
Duzib235G0180 Durio zibethinus HOM05D004831 ORTHO05D003975 5.2e-58 229.9 624 31.7
MSTRG.22702 Avicennia marina HOM05D004831 ORTHO05D003975 6.8e-58 229.6 637 32.5
Rhsim08G0218700 Rhododendron simsii HOM05D004831 ORTHO05D003975 1.5e-57 228.4 665 32.0
Nn8g39278 Nelumbo nucifera HOM05D004831 ORTHO05D003975 4.4e-57 226.9 637 32.5
Hma1.2p1_2171F.1_g315970 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.2e-55 220.7 624 32.9
Cc04_g03580 Coffea canephora HOM05D004831 ORTHO05D003975 1.6e-54 218.4 603 35.2
CAN.G438.52 Capsicum annuum HOM05D004831 ORTHO05D003975 3.0e-53 214.2 644 33.1
TPR.G24077 Trifolium pratense HOM05D004831 ORTHO05D003975 3.9e-53 213.8 170 70.6
FAN14G0810 Fragaria x ananassa HOM05D004831 ORTHO05D003975 1.1e-52 212.2 662 32.6
Lsat_1_v5_gn_1_34820 Lactuca sativa HOM05D004831 ORTHO05D003975 1.5e-52 211.8 620 31.9
MD17G1197700 Malus domestica HOM05D004831 ORTHO05D003975 1.9e-52 211.5 623 32.6
Aa31LG7G15290 Aethionema arabicum HOM05D004831 ORTHO05D003975 2.5e-52 211.1 664 32.2
Solyc03g120340.3 Solanum lycopersicum HOM05D004831 ORTHO05D003975 2.5e-52 211.1 650 32.0
FAN09G2060 Fragaria x ananassa HOM05D004831 ORTHO05D003975 9.5e-52 209.1 688 30.4
PGSC0003DMG400002560 Solanum tuberosum HOM05D004831 ORTHO05D003975 2.8e-51 207.6 677 31.8
HanXRQChr02g0032681 Helianthus annuus HOM05D004831 ORTHO05D003975 1.1e-50 205.7 621 31.2
MBI01_g10032_MAGBIO Magnolia biondii HOM05D004831 ORTHO05D003975 1.1e-50 205.7 624 32.7
Oeu021950.1 Olea europaea HOM05D004831 ORTHO05D003975 1.8e-50 204.9 715 29.9
Sed0009949 Sechium edule HOM05D004831 ORTHO05D003975 1.8e-50 204.9 547 33.8
Aa31sc115G30 Aethionema arabicum HOM05D004831 ORTHO05D003975 3.1e-50 204.1 667 31.2
CiPaw.02G152200 Carya illinoinensis HOM05D004831 ORTHO05D003975 3.1e-50 204.1 305 44.6
Hund06602 Selenicereus undatus HOM05D004831 ORTHO05D003975 5.2e-50 203.4 671 30.7
Sopen03g039230 Solanum pennellii HOM05D004831 ORTHO05D003975 1.5e-49 201.8 635 31.0
Oeu024063.2 Olea europaea HOM05D004831 ORTHO05D003975 2.6e-49 201.1 564 31.4
Ah.01g021180 Amaranthus hybridus HOM05D004831 ORTHO05D003975 4.4e-49 200.3 634 30.0
FvH4_6g30920 Fragaria vesca HOM05D004831 ORTHO05D003975 4.4e-49 200.3 611 31.3
CARHR016160 Cardamine hirsuta HOM05D004831 ORTHO05D003975 5.8e-49 199.9 657 30.7
AUR62011616 Chenopodium quinoa HOM05D004831 ORTHO05D003975 5.8e-49 199.9 631 30.7
SGA_v2.0_scaffold37G14809 Striga asiatica HOM05D004831 ORTHO05D003975 1.7e-48 198.4 697 29.3
Haze_16453 Corylus avellana HOM05D004831 ORTHO05D003975 3.2e-47 194.1 550 31.1
Peaxi162Scf00015g00247 Petunia axillaris HOM05D004831 ORTHO05D003975 3.2e-47 194.1 698 31.1
HanXRQChr05g0163461 Helianthus annuus HOM05D004831 ORTHO05D003975 4.2e-47 193.7 612 30.1
EL10Ac9g21986 Beta vulgaris HOM05D004831 ORTHO05D003975 1.6e-46 191.8 669 30.0
THA.LOC104812471 Tarenaya hassleriana HOM05D004831 ORTHO05D003975 2.1e-46 191.4 687 31.1
Hma1.2p1_0682F.1_g202670 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.5e-46 190.7 587 31.9
Actinidia15826 Actinidia chinensis HOM05D004831 ORTHO05D003975 2.3e-45 188.0 345 37.7
FAN02G3038 Fragaria x ananassa HOM05D004831 ORTHO05D003975 2.3e-45 188.0 616 31.7
AT1G15660 Arabidopsis thaliana HOM05D004831 ORTHO05D003975 3.0e-45 187.6 675 28.9
Hma1.2p1_0323F.1_g125270 Hydrangea macrophylla HOM05D004831 ORTHO05D003975 3.0e-45 187.6 590 31.5
PGR102G0340 Punica granatum HOM05D004831 ORTHO05D003975 1.5e-44 185.3 464 33.2
AUR62016432 Chenopodium quinoa HOM05D004831 ORTHO05D003975 4.7e-43 180.3 607 30.3
AL1G27760 Arabidopsis lyrata HOM05D004831 ORTHO05D003975 1.8e-42 178.3 678 28.5
BcaC05g25641 Brassica carinata HOM05D004831 ORTHO05D003975 2.0e-41 174.9 663 28.4
C05p13810 Brassica napus HOM05D004831 ORTHO05D012057 4.4e-41 173.7 666 28.2
BolC5t30118H Brassica oleracea HOM05D004831 ORTHO05D003975 4.4e-41 173.7 666 28.2
BraA06t24347Z Brassica rapa HOM05D004831 ORTHO05D003975 9.9e-41 172.6 697 28.1
COL.COLO4_30332 Corchorus olitorius HOM05D004831 ORTHO05D003975 1.7e-40 171.8 310 39.7
Sc15g0001240 Simmondsia chinensis HOM05D004831 ORTHO05D003975 3.8e-40 170.6 759 28.5
Nitab4.5_0003159g0050 Nicotiana tabacum HOM05D004831 ORTHO05D003975 3.2e-39 167.5 727 27.9
A06p11680 Brassica napus HOM05D004831 ORTHO05D003975 9.3e-39 166.0 666 28.8
ATR0037G028 Amborella trichopoda HOM05D004831 ORTHO05D003975 1.6e-38 165.2 629 28.3
Lsat_1_v5_gn_9_45780 Lactuca sativa HOM05D004831 ORTHO05D003975 1.6e-38 165.2 604 29.3
unitig_62.g23772 Utricularia gibba HOM05D004831 ORTHO05D003975 1.3e-37 162.2 685 27.6
Nitab4.5_0003885g0040 Nicotiana tabacum HOM05D004831 ORTHO05D003975 1.7e-37 161.8 705 28.1
Sp1g13970 Schrenkiella parvula HOM05D004831 ORTHO05D003975 2.3e-37 161.4 655 26.3
Thhalv10006918m.g Eutrema salsugineum HOM05D004831 ORTHO05D003975 3.0e-37 161.0 674 28.2
DCAR_026304 Daucus carota HOM05D004831 ORTHO05D003975 1.9e-36 158.3 606 28.9
Migut.I00846 Erythranthe guttata HOM05D004831 ORTHO05D003975 2.5e-36 157.9 363 34.7
Carub.0001s1544 Capsella rubella HOM05D004831 ORTHO05D003975 4.8e-35 153.7 665 26.6
CDE04G1285 Ceratophyllum demersum HOM05D004831 ORTHO05D003975 3.1e-34 151.0 738 27.2
BcaC05g25510 Brassica carinata HOM05D004831 ORTHO05D003975 6.4e-32 143.3 675 27.3
Aqoxy7G01849 Aquilegia oxysepala HOM05D004831 ORTHO05D003975 1.4e-31 142.1 654 27.8
Aa31LG7G300 Aethionema arabicum HOM05D004831 ORTHO05D003975 1.9e-31 141.7 623 28.6
PSO782G5420 Papaver somniferum HOM05D004831 ORTHO05D003975 1.9e-31 141.7 670 30.0
PSO063G2677 Papaver somniferum HOM05D004831 ORTHO05D003975 1.6e-30 138.7 662 28.1
ECA247G1173 Erigeron canadensis HOM05D004831 ORTHO05D003975 3.0e-29 134.4 638 27.0
Actinidia15827 Actinidia chinensis HOM05D004831 ORTHO05D003975 5.1e-29 133.7 238 40.8
Manes.04G121450 Manihot esculenta HOM05D004831 ORTHO05D003975 4.3e-28 130.6 297 36.0
ClCG05G013830 Citrullus lanatus HOM05D004831 ORTHO05D003975 4.0e-26 124.0 298 36.2
DCAR_009558 Daucus carota HOM05D004831 ORTHO05D003975 4.9e-24 117.1 516 29.1
TAR624G1194 Trochodendron aralioides HOM05D004831 ORTHO05D003975 1.8e-21 108.6 143 44.8
Haze_24989 Corylus avellana HOM05D004831 ORTHO05D003975 3.3e-20 104.4 176 39.2
HPP92_017895 Vanilla planifolia HOM05D004831 ORTHO05D003975 9.6e-20 102.8 683 24.6
COL.COLO4_30333 Corchorus olitorius HOM05D004831 ORTHO05D003975 3.7e-19 100.9 84 60.7
Zm00001eb159780 Zea mays HOM05D018572 ORTHO05D003975 3.7e-19 100.9 116 44.0
Os01g0617700 Oryza sativa ssp. japonica HOM05D004831 ORTHO05D003975 1.4e-18 99.0 773 23.2
Pp3c2_32580 Physcomitrium patens HOM05D004831 ORTHO05D003975 2.4e-18 98.2 166 39.2
SHI09311 Sapria himalayana HOM05D004831 ORTHO05D003975 1.2e-17 95.9 77 61.0
Migut.I00847 Erythranthe guttata HOM05D004831 ORTHO05D003975 5.8e-17 93.6 107 48.6
Duzib192G1036 Durio zibethinus HOM05D004831 ORTHO05D003975 7.6e-17 93.2 341 30.5
SHI09312 Sapria himalayana HOM05D004831 ORTHO05D003975 2.2e-16 91.7 157 34.4
AagrBONN_evm.TU.Sc2ySwM_368.483__484 Anthoceros agrestis HOM05D004831 ORTHO05D003975 1.9e-15 88.6 150 40.7
SMO203G0255 Selaginella moellendorffii HOM05D004831 ORTHO05D003975 2.3e-13 81.6 82 43.9
TPR.G8483 Trifolium pratense HOM05D004831 ORTHO05D048837 1.5e-12 79.0 138 42.8
Zm00001eb358290 Zea mays HOM05D018572 ORTHO05D003975 1.5e-12 79.0 641 26.2
Mapoly0008s0161 Marchantia polymorpha HOM05D004831 ORTHO05D003975 4.3e-12 77.4 100 41.0
BcaB03g14531 Brassica carinata HOM05D004831 ORTHO05D017393 7.4e-12 76.6 200 32.5
Pp3c5_11060 Physcomitrium patens HOM05D004831 ORTHO05D003975 3.7e-11 74.3 87 37.9
SEGI_34595 Sequoiadendron giganteum HOM05D004831 ORTHO05D003975 2.0e-09 68.6 96 37.5
MD09G1215000 Malus domestica HOM05D004831 ORTHO05D003975 3.8e-08 64.3 89 44.9
Medtr3g434860 Medicago truncatula HOM05D004831 ORTHO05D048837 9.4e-07 59.7 141 34.8
Cre02.g079250 Chlamydomonas reinhardtii HOM05D004831 ORTHO05D003975 4.6e-06 57.4 85 41.2
MCO08G035 Micromonas commoda HOM05D004831 ORTHO05D003975 7.9e-06 56.6 61 54.1


User provided reference genes

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