Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 2.1e-275 951.8 512 100.0
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 9.0e-226 786.9 512 83.6
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 1.8e-221 772.7 503 83.7
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 2.0e-217 759.2 491 80.2
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 2.4e-210 735.7 512 78.3
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 1.9e-207 726.1 508 74.8
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 1.3e-203 713.4 507 75.9
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 1.4e-202 709.9 511 75.9
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 2.2e-195 686.0 511 70.3
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 3.7e-195 685.3 422 87.0
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 1.4e-194 683.3 511 70.1
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 1.0e-181 640.6 510 67.3
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 3.4e-164 582.4 504 60.9
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 1.6e-153 547.0 506 57.5
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 3.0e-152 542.7 510 56.5
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 1.6e-150 537.0 501 58.3
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 9.9e-148 527.7 528 57.8
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 1.5e-143 513.8 510 56.7
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 2.1e-142 510.0 511 55.2
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 4.7e-142 508.8 504 56.0
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 3.4e-140 502.7 506 57.1
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 4.2e-138 495.7 538 52.8
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 3.5e-137 492.7 506 54.2
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 7.8e-137 491.5 520 53.7
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 1.0e-136 491.1 504 53.6
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.1e-135 487.6 506 54.9
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 1.1e-135 487.6 502 55.8
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.1e-135 487.6 502 55.6
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 1.5e-135 487.3 537 51.2
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 7.3e-135 485.0 502 55.2
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 7.3e-135 485.0 505 53.7
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 4.8e-134 482.3 507 54.0
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 2.4e-133 479.9 503 52.3
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 2.4e-133 479.9 502 55.2
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 1.2e-132 477.6 504 53.0
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 1.5e-132 477.2 507 52.7
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 3.4e-132 476.1 508 52.4
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 5.8e-132 475.3 505 54.1
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 2.9e-131 473.0 505 53.7
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 4.9e-131 472.2 508 52.2
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 2.4e-130 469.9 505 53.3
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 3.2e-130 469.5 512 52.5
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 2.7e-129 466.5 503 51.7
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.1e-127 461.1 508 50.8
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 3.3e-127 459.5 504 52.8
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.8e-125 453.8 502 52.6
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 3.4e-124 449.5 510 51.4
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.7e-123 447.2 524 49.6
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 2.9e-123 446.4 505 50.1
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 6.4e-123 445.3 510 50.4
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 6.4e-123 445.3 449 55.0
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 3.2e-122 443.0 505 49.1
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 3.9e-120 436.0 507 49.9
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 1.1e-119 434.5 495 48.1
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.5e-119 434.1 537 48.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 4.3e-119 432.6 509 49.9
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 5.6e-119 432.2 513 49.5
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 3.7e-118 429.5 508 48.4
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 1.8e-117 427.2 517 50.7
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 5.3e-117 425.6 508 49.8
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 2.6e-116 423.3 504 46.8
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 3.4e-116 422.9 511 48.5
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 5.8e-116 422.2 513 46.4
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 1.7e-115 420.6 578 45.2
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 2.2e-115 420.2 513 50.3
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 3.8e-115 419.5 511 48.3
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 5.5e-114 415.6 517 46.8
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 7.1e-114 415.2 505 47.5
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 7.9e-113 411.8 508 47.4
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.3e-112 411.0 518 45.9
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 3.9e-112 409.5 510 48.8
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.1e-111 407.9 517 45.6
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 1.1e-111 407.9 511 44.8
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.9e-111 407.1 509 48.1
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 4.3e-111 406.0 509 47.0
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 6.3e-110 402.1 501 43.9
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 8.2e-110 401.7 443 48.8
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 2.4e-109 400.2 514 46.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 4.1e-109 399.4 513 47.0
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 1.3e-107 394.4 509 47.0
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.3e-107 394.4 526 46.4
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-102 377.9 257 77.8
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 4.1e-101 372.9 294 71.8
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 2.6e-100 370.2 456 49.6
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 9.4e-98 361.7 436 48.4
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 6.7e-96 355.5 502 45.4
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.1e-87 328.2 375 49.6
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 1.1e-87 328.2 435 43.0
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 2.0e-87 327.4 501 40.9
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 9.7e-87 325.1 516 40.1
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 7.0e-85 318.9 504 41.7
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 7.0e-85 318.9 411 46.7
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 8.5e-83 312.0 381 48.8
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 6.3e-78 295.8 471 38.4
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 8.2e-78 295.4 502 39.2
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 8.8e-72 275.4 507 37.9
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 6.3e-70 269.2 204 65.7
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.8e-67 260.0 516 34.7
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 1.8e-64 251.1 176 68.8
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 2.3e-64 250.8 543 32.6
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 2.7e-60 237.3 366 41.8
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 1.9e-58 231.1 320 45.0
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 4.0e-56 223.4 282 46.5
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 5.7e-55 219.5 301 40.2
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.2e-52 211.8 211 55.0
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 3.3e-50 203.8 505 32.1
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 1.6e-49 201.4 124 79.8
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.8e-49 200.7 529 28.2
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 3.7e-46 190.3 118 83.9
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.7e-41 173.3 124 72.6
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 1.8e-40 171.4 109 77.1
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 1.5e-39 168.3 136 68.4
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 2.5e-34 151.0 171 44.4
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 1.3e-27 128.6 70 90.0
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 6.2e-25 119.8 83 73.5
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 3.3e-18 97.4 128 41.4
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 1.8e-16 91.7 108 50.0
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 1.1e-13 82.4 48 83.3
Medtr6g471100 Medicago truncatula HOM05D000162 ORTHO05D000090 4.2e-13 80.5 103 52.4
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 4.6e-12 77.0 52 73.1
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 4.8e-09 67.0 171 31.6
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 1.8e-08 65.1 51 58.8


User provided reference genes

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