Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g049450 Medicago truncatula HOM05D006472 ORTHO05D008222 0.0e+00 1196.0 599 100.0
Medtr5g075970 Medicago truncatula HOM05D006472 ORTHO05D008222 7.2e-259 897.1 665 69.2
Phvul.008G243600 Phaseolus vulgaris HOM05D006472 ORTHO05D008222 2.9e-252 875.2 663 68.3
Glyma.14G207300 Glycine max HOM05D006472 ORTHO05D008222 4.3e-251 871.3 663 67.7
Lalb_Chr10g0103951 Lupinus albus HOM05D006472 ORTHO05D008222 7.3e-251 870.5 666 67.3
TPR.G15403 Trifolium pratense HOM05D006472 ORTHO05D008222 1.0e-249 866.7 653 68.9
VMungo0647G2416 Vigna mungo HOM05D006472 ORTHO05D008222 1.4e-249 866.3 663 67.9
Ca_05732_v3 Cicer arietinum L. HOM05D006472 ORTHO05D008222 5.8e-248 860.9 665 66.9
Glyma.02G238400 Glycine max HOM05D006472 ORTHO05D008222 9.8e-248 860.1 663 67.1
Psat2g049480 Pisum sativum HOM05D006472 ORTHO05D008222 6.0e-245 850.9 666 66.4
LjContig00141g0008115 Lotus japonicus HOM05D006472 ORTHO05D008222 1.9e-243 845.9 664 66.0
Nn5g26767 Nelumbo nucifera HOM05D006472 ORTHO05D008222 8.1e-234 813.9 663 63.3
QL01p023614 Quercus lobata HOM05D006472 ORTHO05D008222 3.7e-231 805.1 663 61.8
Cfa011860 Carpinus fangiana HOM05D006472 ORTHO05D008222 1.9e-230 802.7 668 61.4
GSVIVG01024525001 Vitis vinifera HOM05D006472 ORTHO05D008222 1.2e-229 800.0 663 61.7
CSS0014639 Camellia sinensis var. sinensis HOM05D006472 ORTHO05D008222 1.0e-228 797.0 666 61.7
Actinidia34511 Actinidia chinensis HOM05D006472 ORTHO05D008222 1.3e-228 796.6 663 61.7
TAR369G0765 Trochodendron aralioides HOM05D006472 ORTHO05D008222 1.6e-226 789.6 663 61.2
FAN21G1719 Fragaria x ananassa HOM05D006472 ORTHO05D008222 5.2e-225 784.6 665 59.2
FvH4_3g41130 Fragaria vesca HOM05D006472 ORTHO05D008222 6.8e-225 784.3 665 59.4
MELO3C013696.2 Cucumis melo HOM05D006472 ORTHO05D008222 1.2e-224 783.5 663 61.1
FAN16G1417 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.2e-224 783.5 665 59.2
Dinv28760 Davidia involucrata HOM05D006472 ORTHO05D008222 1.5e-224 783.1 664 61.6
FAN11G3159 Fragaria x ananassa HOM05D006472 ORTHO05D008222 2.0e-224 782.7 665 59.2
MD03G1047100 Malus domestica HOM05D006472 ORTHO05D008222 2.6e-224 782.3 663 60.2
CANSAT54G2825 Cannabis sativa HOM05D006472 ORTHO05D008222 3.4e-224 781.9 665 59.7
RcHm_v2.0_Chr5g0073921 Rosa chinensis HOM05D006472 ORTHO05D008222 3.4e-224 781.9 665 59.4
Prupe.6G038300 Prunus persica HOM05D006472 ORTHO05D008222 7.6e-224 780.8 663 59.9
CiPaw.13G059900 Carya illinoinensis HOM05D006472 ORTHO05D008222 2.9e-223 778.9 664 60.1
Ah.09g233500 Amaranthus hybridus HOM05D006472 ORTHO05D008222 2.4e-222 775.8 621 63.3
vmacro14657 Vaccinium macrocarpon HOM05D006472 ORTHO05D008222 3.2e-222 775.4 666 60.7
Atru.chr10.2355 Acer truncatum HOM05D006472 ORTHO05D008222 2.1e-221 772.7 663 60.2
arahy.Tifrunner.gnm1.ann1.LP7W2Z Arachis hypogaea HOM05D006472 ORTHO05D008222 8.7e-220 767.3 662 62.1
Gohir.D03G146000 Gossypium hirsutum HOM05D006472 ORTHO05D008222 5.6e-219 764.6 630 61.9
Gohir.A03G022700 Gossypium hirsutum HOM05D006472 ORTHO05D008222 6.2e-218 761.1 630 61.4
PSO384G2469 Papaver somniferum HOM05D006472 ORTHO05D008222 8.1e-218 760.8 660 58.8
Hma1.2p1_0170F.1_g075410 Hydrangea macrophylla HOM05D006472 ORTHO05D008222 1.4e-217 760.0 644 61.6
PSO339G5368 Papaver somniferum HOM05D006472 ORTHO05D008222 1.4e-217 760.0 660 58.5
CDE07G0456 Ceratophyllum demersum HOM05D006472 ORTHO05D008222 5.3e-217 758.1 664 58.0
EL10Ac8g20566 Beta vulgaris HOM05D006472 ORTHO05D008222 9.0e-217 757.3 664 58.6
Haze_24495 Corylus avellana HOM05D006472 ORTHO05D008222 1.2e-216 756.9 776 52.8
Manes.18G123800 Manihot esculenta HOM05D006472 ORTHO05D008222 5.8e-216 754.6 663 59.1
HanXRQChr11g0338241 Helianthus annuus HOM05D006472 ORTHO05D008222 1.3e-215 753.4 666 58.1
ECA248G1121 Erigeron canadensis HOM05D006472 ORTHO05D008222 2.2e-215 752.7 666 57.7
FAN25G3237 Fragaria x ananassa HOM05D006472 ORTHO05D008222 1.4e-214 750.0 665 57.3
Thecc.09G366100 Theobroma cacao HOM05D006472 ORTHO05D008222 3.2e-214 748.8 669 57.7
Migut.N00711 Erythranthe guttata HOM05D006472 ORTHO05D008222 7.1e-214 747.7 631 60.4
Lsat_1_v5_gn_5_176920 Lactuca sativa HOM05D006472 ORTHO05D008222 9.3e-214 747.3 666 58.4
arahy.Tifrunner.gnm1.ann1.9899SL Arachis hypogaea HOM05D006472 ORTHO05D008222 4.6e-213 745.0 662 61.0
Potri.019G133000 Populus trichocarpa HOM05D006472 ORTHO05D008222 6.6e-212 741.1 663 58.8
Rhsim01G0245200 Rhododendron simsii HOM05D006472 ORTHO05D008222 1.5e-211 740.0 735 54.8
Aqoxy2G00669 Aquilegia oxysepala HOM05D006472 ORTHO05D008222 1.9e-211 739.6 660 56.4
AUR62039472 Chenopodium quinoa HOM05D006472 ORTHO05D008222 7.3e-211 737.6 664 58.1
Sabra19G0129200 Salix brachista HOM05D006472 ORTHO05D008222 3.6e-210 735.3 673 58.1
Lj2C1106G3 Lonicera japonica HOM05D006472 ORTHO05D008222 6.9e-209 731.1 661 57.6
Sed0004215 Sechium edule HOM05D006472 ORTHO05D008222 5.8e-208 728.0 623 60.4
TWI31G0750 Tripterygium wilfordii HOM05D006472 ORTHO05D008222 5.8e-208 728.0 660 57.1
Eucgr.J01848 Eucalyptus grandis HOM05D006472 ORTHO05D008222 2.9e-207 725.7 666 56.5
ATR1127G223 Amborella trichopoda HOM05D006472 ORTHO05D008222 2.7e-205 719.2 611 60.2
PGR119G0508 Punica granatum HOM05D006472 ORTHO05D008222 6.0e-205 718.0 657 57.2
Sopen09g017740 Solanum pennellii HOM05D006472 ORTHO05D008222 3.9e-204 715.3 661 56.0
THA.LOC104798389 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 3.9e-204 715.3 665 53.2
Solyc09g055340.4 Solanum lycopersicum HOM05D006472 ORTHO05D008222 5.1e-204 714.9 661 56.0
Duzib168G0790 Durio zibethinus HOM05D006472 ORTHO05D008222 2.5e-198 696.0 668 55.8
SGA_v2.0_scaffold120G33005 Striga asiatica HOM05D006472 ORTHO05D008222 9.3e-198 694.1 671 54.7
Aa31LG3G7830 Aethionema arabicum HOM05D006472 ORTHO05D008222 2.1e-197 693.0 660 52.6
Sp6g13540 Schrenkiella parvula HOM05D006472 ORTHO05D008222 7.9e-197 691.0 663 52.6
COL.COLO4_08158 Corchorus olitorius HOM05D006472 ORTHO05D008222 6.7e-196 688.0 671 53.9
AT5G51340 Arabidopsis thaliana HOM05D006472 ORTHO05D008222 2.1e-194 682.9 663 52.8
Thhalv10012792m.g Eutrema salsugineum HOM05D006472 ORTHO05D008222 2.1e-194 682.9 663 52.0
BcaC04g20686 Brassica carinata HOM05D006472 ORTHO05D008222 4.8e-194 681.8 664 51.8
C09p40600 Brassica napus HOM05D006472 ORTHO05D008222 4.8e-194 681.8 664 51.8
BolC9t56942H Brassica oleracea HOM05D006472 ORTHO05D008222 4.8e-194 681.8 664 51.8
A10p09080 Brassica napus HOM05D006472 ORTHO05D008222 8.2e-194 681.0 665 51.6
BraA10t42993Z Brassica rapa HOM05D006472 ORTHO05D008222 8.2e-194 681.0 665 51.6
Carub.0008s1136 Capsella rubella HOM05D006472 ORTHO05D008222 8.2e-194 681.0 663 51.9
BcaB08g35491 Brassica carinata HOM05D006472 ORTHO05D008222 1.4e-193 680.2 664 52.3
AL8G25600 Arabidopsis lyrata HOM05D006472 ORTHO05D008222 3.1e-193 679.1 663 52.5
HPP92_024257 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.1e-189 666.4 654 52.9
HPP92_024263 Vanilla planifolia HOM05D006472 ORTHO05D008222 2.1e-189 666.4 654 52.9
Sc11g0008920 Simmondsia chinensis HOM05D006472 ORTHO05D008222 1.1e-187 660.6 592 58.8
Zm00001eb193950 Zea mays HOM05D006472 ORTHO05D008222 1.7e-159 567.0 665 46.8
Mapoly0020s0144 Marchantia polymorpha HOM05D006472 ORTHO05D008222 3.4e-155 552.7 659 46.3
Pp3c10_12710 Physcomitrium patens HOM05D006472 ORTHO05D008222 6.3e-154 548.5 658 46.5
SMO119G0519 Selaginella moellendorffii HOM05D006472 ORTHO05D008222 7.0e-153 545.0 660 46.5
Ciclev10000965m.g Citrus clementina HOM05D006472 ORTHO05D008222 5.0e-151 538.9 481 56.8
DCAR_012719 Daucus carota HOM05D006472 ORTHO05D008222 2.1e-149 533.5 524 54.0
Pp3c26_4960 Physcomitrium patens HOM05D006472 ORTHO05D008222 5.7e-147 525.4 660 43.9
unitig_8.g3682 Utricularia gibba HOM05D004101 ORTHO05D005221 1.0e-140 504.6 549 50.6
CsaV3_3G000010 Cucumis sativus L. HOM05D006472 ORTHO05D008222 6.4e-130 468.8 339 69.9
AagrBONN_evm.TU.Sc2ySwM_117.3516 Anthoceros agrestis HOM05D006472 ORTHO05D008222 3.0e-127 459.9 642 40.7
Oeu034746.1 Olea europaea HOM05D006472 ORTHO05D008222 3.1e-124 449.9 339 66.7
CBR_g46787 Chara braunii HOM05D006472 ORTHO05D008222 8.3e-122 441.8 597 41.0
THA.LOC104824615 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 7.6e-115 418.7 430 48.8
AUR62041830 Chenopodium quinoa HOM05D006472 ORTHO05D008222 1.2e-109 401.4 508 45.5
Nitab4.5_0002030g0020 Nicotiana tabacum HOM05D006472 ORTHO05D008222 1.6e-109 401.0 537 43.2
Peaxi162Scf00293g00816 Petunia axillaris HOM05D006472 ORTHO05D008222 1.0e-103 381.7 427 49.6
THA.LOC104824654 Tarenaya hassleriana HOM05D006472 ORTHO05D008222 9.3e-97 358.6 391 46.8
ClCG10G000020 Citrullus lanatus HOM05D006472 ORTHO05D008222 2.1e-93 347.4 378 50.3
Os04g0347600 Oryza sativa ssp. japonica HOM05D006472 ORTHO05D008222 2.8e-93 347.1 276 62.3
Cc01_g15530 Coffea canephora HOM05D006472 ORTHO05D008222 1.8e-87 327.8 255 60.8
Nitab4.5_0000195g0150 Nicotiana tabacum HOM05D006472 ORTHO05D008222 9.0e-84 315.5 477 40.5
Cpa.g.sc2.260 Carica papaya HOM05D006472 ORTHO05D008222 1.3e-82 311.6 390 45.6
SHI30108 Sapria himalayana HOM05D006714 ORTHO05D008103 2.9e-82 310.5 473 40.2
Nn5g26768 Nelumbo nucifera HOM05D006472 ORTHO05D008222 1.1e-81 308.5 231 68.4
ClCG10G000010 Citrullus lanatus HOM05D006472 ORTHO05D008222 3.5e-80 303.5 263 60.5
Cpa.g.sc2.261 Carica papaya HOM05D006472 ORTHO05D008222 3.7e-77 293.5 260 57.7
CARHR264090 Cardamine hirsuta HOM05D006472 ORTHO05D008222 5.3e-76 289.7 236 60.2
Cc01_g15520 Coffea canephora HOM05D006472 ORTHO05D008222 5.5e-65 253.1 208 60.1
Atru.chr10.2358 Acer truncatum HOM05D006472 ORTHO05D008222 1.7e-50 204.9 234 47.4
Ciclev10004061m.g Citrus clementina HOM05D006472 ORTHO05D008222 2.1e-40 171.4 142 61.3
Nitab4.5_0001025g0010 Nicotiana tabacum HOM05D006472 ORTHO05D008222 3.0e-39 167.5 216 43.5
SEGI_25118 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 1.6e-35 155.2 139 56.1
MCO15G146 Micromonas commoda HOM05D006472 ORTHO05D008222 3.4e-30 137.5 688 24.0
Gorai.003G153200 Gossypium raimondii HOM05D006472 ORTHO05D008222 1.8e-28 131.7 98 67.3
Haze_06065 Corylus avellana HOM05D000100 ORTHO05D000052 2.9e-21 107.8 84 56.0
SEGI_41332 Sequoiadendron giganteum HOM05D006472 ORTHO05D008222 3.5e-19 100.9 69 72.5
Lsat_1_v5_gn_5_131141 Lactuca sativa HOM05D006472 ORTHO05D008222 8.0e-16 89.7 69 63.8
Medtr5g078560 Medicago truncatula HOM05D006472 ORTHO05D008222 1.4e-12 79.0 286 29.0
Cre12.g532650 Chlamydomonas reinhardtii HOM05D006472 ORTHO05D008222 2.4e-12 78.2 506 22.3
Medtr6g051400 Medicago truncatula HOM05D006472 ORTHO05D008222 1.6e-08 65.5 45 64.4
Medtr4g023640 Medicago truncatula HOM05D006472 ORTHO05D261692 5.8e-06 57.0 35 71.4


User provided reference genes

Program Settings