Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g049200 Medicago truncatula HOM05D002169 ORTHO05D020691 7.3e-101 370.5 186 100.0
Medtr8g073170 Medicago truncatula HOM05D002169 ORTHO05D006577 3.5e-34 149.1 113 70.8
TPR.G13725 Trifolium pratense HOM05D002169 ORTHO05D006577 4.2e-32 142.1 111 67.6
Glyma.06G143500 Glycine max HOM05D002169 ORTHO05D006577 4.7e-31 138.7 111 64.0
Lj4g0016756 Lotus japonicus HOM05D002169 ORTHO05D006577 8.0e-31 137.9 111 65.8
Ca_02844_v3 Cicer arietinum L. HOM05D002169 ORTHO05D006577 1.0e-30 137.5 113 64.6
Glyma.04G221900 Glycine max HOM05D002169 ORTHO05D006577 1.2e-29 134.0 111 62.2
arahy.Tifrunner.gnm1.ann1.L3E9Q0 Arachis hypogaea HOM05D002169 ORTHO05D006577 1.5e-29 133.7 111 63.1
Psat4g104600 Pisum sativum HOM05D002169 ORTHO05D006577 4.4e-29 132.1 111 63.1
arahy.Tifrunner.gnm1.ann1.DGN8CB Arachis hypogaea HOM05D002169 ORTHO05D006577 7.5e-29 131.3 111 61.3
RcHm_v2.0_Chr2g0096961 Rosa chinensis HOM05D002169 ORTHO05D006577 2.2e-28 129.8 113 61.9
Aqoxy6G01571 Aquilegia oxysepala HOM05D002169 ORTHO05D006577 4.8e-28 128.6 109 65.1
Prupe.7G185100 Prunus persica HOM05D002169 ORTHO05D006577 4.8e-28 128.6 113 61.1
PGR004G0941 Punica granatum HOM05D002169 ORTHO05D006577 4.8e-28 128.6 111 61.3
MD15G1229000 Malus domestica HOM05D002169 ORTHO05D006577 1.1e-27 127.5 113 60.2
Hund19690 Selenicereus undatus HOM05D002169 ORTHO05D006577 1.1e-27 127.5 109 60.6
FAN26G1091 Fragaria x ananassa HOM05D002169 ORTHO05D006577 2.4e-27 126.3 113 61.1
Lalb_Chr10g0097551 Lupinus albus HOM05D002169 ORTHO05D006577 2.4e-27 126.3 111 61.3
QL06p053209 Quercus lobata HOM05D002169 ORTHO05D006577 2.4e-27 126.3 105 63.8
FvH4_1g10170 Fragaria vesca HOM05D002169 ORTHO05D006577 3.1e-27 125.9 113 61.1
Phvul.009G142600 Phaseolus vulgaris HOM05D002169 ORTHO05D006577 3.1e-27 125.9 112 59.8
Cc07_g12000 Coffea canephora HOM05D002169 ORTHO05D006577 4.1e-27 125.6 107 60.7
CsaV3_7G008800 Cucumis sativus L. HOM05D002169 ORTHO05D006577 4.1e-27 125.6 111 63.1
DCAR_019080 Daucus carota HOM05D002169 ORTHO05D006577 4.1e-27 125.6 109 62.4
FAN23G0161 Fragaria x ananassa HOM05D002169 ORTHO05D006577 4.1e-27 125.6 113 61.1
FAN23G2634 Fragaria x ananassa HOM05D002169 ORTHO05D006577 4.1e-27 125.6 113 61.1
Actinidia17335 Actinidia chinensis HOM05D002169 ORTHO05D006577 5.4e-27 125.2 133 50.4
MD02G1113900 Malus domestica HOM05D002169 ORTHO05D006577 5.4e-27 125.2 113 59.3
Cfa013486 Carpinus fangiana HOM05D002169 ORTHO05D006577 7.0e-27 124.8 105 62.9
Dinv40201 Davidia involucrata HOM05D002169 ORTHO05D006577 7.0e-27 124.8 109 59.6
GSVIVG01022300001 Vitis vinifera HOM05D002169 ORTHO05D006577 7.0e-27 124.8 109 60.6
MELO3C018432.2 Cucumis melo HOM05D002169 ORTHO05D006577 9.1e-27 124.4 111 62.2
Haze_03631 Corylus avellana HOM05D002169 ORTHO05D006577 1.2e-26 124.0 105 62.9
CSS0008574 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 1.6e-26 123.6 109 58.7
CSS0019965 Camellia sinensis var. sinensis HOM05D002169 ORTHO05D006577 1.6e-26 123.6 109 58.7
Rhsim10G0192800 Rhododendron simsii HOM05D002169 ORTHO05D006577 1.6e-26 123.6 138 49.3
Sc10g0009280 Simmondsia chinensis HOM05D002169 ORTHO05D006577 2.0e-26 123.2 77 74.0
vmacro20619 Vaccinium macrocarpon HOM05D002169 ORTHO05D006577 2.0e-26 123.2 109 58.7
ClCG02G005730 Citrullus lanatus HOM05D002169 ORTHO05D006577 3.5e-26 122.5 111 61.3
Eucgr.J00205 Eucalyptus grandis HOM05D002169 ORTHO05D006577 3.5e-26 122.5 112 60.7
Lj4A238G77 Lonicera japonica HOM05D002169 ORTHO05D006577 3.5e-26 122.5 109 59.6
EL10Ac6g15040 Beta vulgaris HOM05D002169 ORTHO05D006577 4.5e-26 122.1 77 77.9
HanXRQChr14g0443111 Helianthus annuus HOM05D002169 ORTHO05D006577 4.5e-26 122.1 109 61.5
Actinidia22888 Actinidia chinensis HOM05D002169 ORTHO05D006577 7.7e-26 121.3 109 56.9
FAN28G2624 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.3e-25 120.6 110 60.9
MSTRG.3634 Avicennia marina HOM05D002169 ORTHO05D006577 1.7e-25 120.2 118 55.9
Migut.L00778 Erythranthe guttata HOM05D002169 ORTHO05D006577 1.7e-25 120.2 77 74.0
Lsat_1_v5_gn_2_73920 Lactuca sativa HOM05D002169 ORTHO05D006577 1.7e-25 120.2 109 60.6
Nitab4.5_0001467g0120 Nicotiana tabacum HOM05D002169 ORTHO05D006577 1.7e-25 120.2 108 63.0
CiPaw.07G001100 Carya illinoinensis HOM05D002169 ORTHO05D006577 2.3e-25 119.8 105 60.0
CANSAT64G0090 Cannabis sativa HOM05D002169 ORTHO05D006577 2.9e-25 119.4 113 57.5
ECA238G3790 Erigeron canadensis HOM05D002169 ORTHO05D006577 2.9e-25 119.4 109 61.5
Nitab4.5_0008533g0010 Nicotiana tabacum HOM05D002169 ORTHO05D006577 2.9e-25 119.4 108 63.9
CDE06G1921 Ceratophyllum demersum HOM05D002169 ORTHO05D006577 5.0e-25 118.6 109 58.7
Manes.01G156500 Manihot esculenta HOM05D002169 ORTHO05D006577 5.0e-25 118.6 109 59.6
Psat0s2855g0120 Pisum sativum HOM05D002169 ORTHO05D020691 5.0e-25 118.6 74 81.1
TAR381G0949 Trochodendron aralioides HOM05D002169 ORTHO05D006577 5.0e-25 118.6 109 57.8
Dinv28311 Davidia involucrata HOM05D002169 ORTHO05D006577 1.1e-24 117.5 109 58.7
FAN19G1591 Fragaria x ananassa HOM05D002169 ORTHO05D006577 1.1e-24 117.5 124 55.6
Oeu012456.1 Olea europaea HOM05D002169 ORTHO05D006577 1.1e-24 117.5 105 60.0
Hma1.2p1_0085F.1_g044520 Hydrangea macrophylla HOM05D002169 ORTHO05D006577 1.5e-24 117.1 77 72.7
SGA_v2.0_scaffold132G34513 Striga asiatica HOM05D002169 ORTHO05D006577 1.5e-24 117.1 105 56.2
FAN01G1564 Fragaria x ananassa HOM05D002169 ORTHO05D020691 1.9e-24 116.7 75 78.7
FAN06G1171 Fragaria x ananassa HOM05D002169 ORTHO05D020691 2.5e-24 116.3 75 78.7
Ciclev10024818m.g Citrus clementina HOM05D002169 ORTHO05D006577 3.3e-24 115.9 105 63.8
SGA_v2.0_scaffold14G07128 Striga asiatica HOM05D002169 ORTHO05D006577 3.3e-24 115.9 105 57.1
Peaxi162Scf00040g03136 Petunia axillaris HOM05D002169 ORTHO05D006577 4.2e-24 115.5 107 57.9
Sed0000096 Sechium edule HOM05D002169 ORTHO05D006577 4.2e-24 115.5 111 58.6
unitig_747.g21786 Utricularia gibba HOM05D002169 ORTHO05D006577 2.1e-23 113.2 77 71.4
Zm00001eb002260 Zea mays HOM05D002169 ORTHO05D006577 2.8e-23 112.8 110 55.5
ECA238G0185 Erigeron canadensis HOM05D000109 ORTHO05D000520 3.6e-23 112.5 77 74.0
Thecc.01G003600 Theobroma cacao HOM05D002169 ORTHO05D006577 1.0e-22 110.9 107 58.9
Cfa007098 Carpinus fangiana HOM05D002169 ORTHO05D006577 1.4e-22 110.5 105 58.1
FvH4_7g18421 Fragaria vesca HOM05D002169 ORTHO05D020691 2.3e-22 109.8 150 48.0
Atru.chr3.27 Acer truncatum HOM05D002169 ORTHO05D006577 3.0e-22 109.4 107 58.9
ATR0807G141 Amborella trichopoda HOM05D002169 ORTHO05D006577 3.0e-22 109.4 77 70.1
Cpa.g.sc6.358 Carica papaya HOM05D002169 ORTHO05D006577 3.0e-22 109.4 103 62.1
THA.LOC104819712 Tarenaya hassleriana HOM05D002169 ORTHO05D006577 3.0e-22 109.4 103 63.1
CAN.G1238.30 Capsicum annuum HOM05D002169 ORTHO05D006577 5.2e-22 108.6 117 56.4
Os03g0129200 Oryza sativa ssp. japonica HOM05D002169 ORTHO05D006577 6.8e-22 108.2 109 53.2
PSO675G7681 Papaver somniferum HOM05D002169 ORTHO05D006577 2.0e-21 106.7 109 56.9
HPP92_021382 Vanilla planifolia HOM05D002169 ORTHO05D006577 2.0e-21 106.7 75 68.0
Solyc02g082460.3 Solanum lycopersicum HOM05D002169 ORTHO05D006577 2.6e-21 106.3 108 58.3
Sopen02g027150 Solanum pennellii HOM05D002169 ORTHO05D006577 2.6e-21 106.3 108 58.3
PSO541G0991 Papaver somniferum HOM05D002169 ORTHO05D006577 3.4e-21 105.9 81 69.1
Sabra07G0050400 Salix brachista HOM05D002169 ORTHO05D006577 4.4e-21 105.5 78 73.1
Sp3g30870 Schrenkiella parvula HOM05D002169 ORTHO05D006577 7.5e-21 104.8 117 55.6
Carub.0003s3157 Capsella rubella HOM05D002169 ORTHO05D006577 1.3e-20 104.0 117 55.6
CARHR107670 Cardamine hirsuta HOM05D002169 ORTHO05D006577 1.3e-20 104.0 117 55.6
Zm00001eb092200 Zea mays HOM05D005147 ORTHO05D006132 1.3e-20 104.0 76 67.1
Potri.007G059100 Populus trichocarpa HOM05D002169 ORTHO05D006577 1.7e-20 103.6 110 55.5
Zm00001eb330250 Zea mays HOM05D002169 ORTHO05D020691 1.7e-20 103.6 78 67.9
Mapoly0081s0047 Marchantia polymorpha HOM05D002169 ORTHO05D006577 2.2e-20 103.2 77 67.5
AagrBONN_evm.TU.Sc2ySwM_228.1045 Anthoceros agrestis HOM05D002169 ORTHO05D006577 2.8e-20 102.8 77 66.2
AL3G50440 Arabidopsis lyrata HOM05D002169 ORTHO05D006577 2.8e-20 102.8 117 55.6
Thhalv10022534m.g Eutrema salsugineum HOM05D002169 ORTHO05D006577 2.8e-20 102.8 117 54.7
TWI73G1258 Tripterygium wilfordii HOM05D002169 ORTHO05D006577 2.8e-20 102.8 109 54.1
Duzib147G0840 Durio zibethinus HOM05D002169 ORTHO05D006577 3.7e-20 102.4 109 56.9
Gohir.D07G178500 Gossypium hirsutum HOM05D002169 ORTHO05D006577 3.7e-20 102.4 108 54.6
Gorai.001G199700 Gossypium raimondii HOM05D002169 ORTHO05D006577 3.7e-20 102.4 108 54.6
AT2G17510 Arabidopsis thaliana HOM05D002169 ORTHO05D006577 4.9e-20 102.1 122 54.1
BcaB07g31725 Brassica carinata HOM05D002169 ORTHO05D006577 4.9e-20 102.1 117 53.8
BcaC04g22967 Brassica carinata HOM05D002169 ORTHO05D006577 4.9e-20 102.1 117 53.8
C09p13440 Brassica napus HOM05D002169 ORTHO05D006577 4.9e-20 102.1 117 53.8
BolC9t54234H Brassica oleracea HOM05D002169 ORTHO05D006577 4.9e-20 102.1 117 53.8
Aa31LG8G14800 Aethionema arabicum HOM05D002169 ORTHO05D006577 8.3e-20 101.3 117 53.0
A09p11420 Brassica napus HOM05D002169 ORTHO05D006577 8.3e-20 101.3 117 53.8
BraA09t36782Z Brassica rapa HOM05D002169 ORTHO05D006577 8.3e-20 101.3 117 53.8
Gohir.A07G171800 Gossypium hirsutum HOM05D002169 ORTHO05D006577 1.1e-19 100.9 108 53.7
AUR62016565 Chenopodium quinoa HOM05D002169 ORTHO05D006577 1.8e-19 100.1 77 68.8
AUR62003736 Chenopodium quinoa HOM05D002169 ORTHO05D006577 1.2e-18 97.4 77 67.5
Pp3c16_17530 Physcomitrium patens HOM05D002169 ORTHO05D006577 3.5e-18 95.9 107 50.5
CBR_g8384 Chara braunii HOM05D002169 ORTHO05D006577 7.8e-18 94.7 78 67.9
SMO228G0179 Selaginella moellendorffii HOM05D002169 ORTHO05D006577 7.8e-18 94.7 77 62.3
Lj4A238T76 Lonicera japonica HOM05D002169 ORTHO05D020691 1.3e-17 94.0 75 66.7
Zm00001eb248030 Zea mays HOM05D002169 ORTHO05D004800 5.0e-17 92.0 100 51.0
VMungo1215G1369 Vigna mungo HOM05D002169 ORTHO05D006577 3.6e-15 85.9 96 51.0
SHI29554 Sapria himalayana HOM05D002169 ORTHO05D006577 1.0e-14 84.3 142 41.5
CsaV3_3G005680 Cucumis sativus L. HOM05D002169 ORTHO05D006577 8.9e-14 81.3 88 56.8
Medtr2g015130 Medicago truncatula HOM05D011094 ORTHO05D261447 5.8e-13 78.6 38 89.5
PRCOL_00000788 Prasinoderma coloniale HOM05D002169 ORTHO05D006577 1.4e-11 73.9 85 45.9
Cre14.g613850 Chlamydomonas reinhardtii HOM05D002169 ORTHO05D006577 1.6e-10 70.5 77 45.5
MCO02G146 Micromonas commoda HOM05D002169 ORTHO05D006577 1.3e-09 67.4 83 47.0
BcaNung02375 Brassica carinata HOM05D002169 ORTHO05D006577 9.5e-08 61.2 46 67.4
Medtr6g024105 Medicago truncatula HOM05D011094 ORTHO05D258647 1.4e-06 57.4 29 82.8
Medtr1g069865 Medicago truncatula HOM05D011094 ORTHO05D266511 5.2e-06 55.5 27 92.6


User provided reference genes

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