Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g049050 Medicago truncatula HOM05D006114 ORTHO05D007609 8.4e-218 760.0 366 100.0
Medtr6g034935 Medicago truncatula HOM05D006114 ORTHO05D007609 4.9e-149 531.6 385 68.8
Ca_27292_v3 Cicer arietinum L. HOM05D006114 ORTHO05D007609 1.7e-141 506.5 379 68.1
Lj2g0010896 Lotus japonicus HOM05D006114 ORTHO05D007609 2.9e-133 479.2 374 62.8
Lalb_Chr19g0130321 Lupinus albus HOM05D006114 ORTHO05D007609 1.7e-122 443.4 391 59.8
Phvul.004G097500 Phaseolus vulgaris HOM05D006114 ORTHO05D007609 3.6e-120 435.6 380 59.5
VMungo0464G2055 Vigna mungo HOM05D006114 ORTHO05D007609 8.1e-120 434.5 383 58.7
MD05G1021300 Malus domestica HOM05D006114 ORTHO05D007609 1.5e-118 430.3 367 60.5
MD10G1022100 Malus domestica HOM05D006114 ORTHO05D007609 8.4e-117 424.5 370 59.2
Prupe.8G025000 Prunus persica HOM05D006114 ORTHO05D007609 3.2e-116 422.5 368 59.5
CSS0028797 Camellia sinensis var. sinensis HOM05D006114 ORTHO05D007609 2.1e-115 419.9 376 58.0
Actinidia15143 Actinidia chinensis HOM05D006114 ORTHO05D007609 2.1e-112 409.8 377 55.2
CANSAT25G1256 Cannabis sativa HOM05D006114 ORTHO05D007609 1.1e-111 407.5 376 56.6
Dinv41097 Davidia involucrata HOM05D006114 ORTHO05D007609 1.1e-111 407.5 364 58.0
CiPaw.16G014300 Carya illinoinensis HOM05D006114 ORTHO05D007609 6.9e-111 404.8 376 56.9
RcHm_v2.0_Chr6g0276341 Rosa chinensis HOM05D006114 ORTHO05D007609 1.2e-110 404.1 370 57.0
Glyma.02G083400 Glycine max HOM05D006114 ORTHO05D007609 2.6e-110 402.9 377 57.3
Haze_17740 Corylus avellana HOM05D006114 ORTHO05D007609 5.8e-110 401.7 378 55.0
Ciclev10001576m.g Citrus clementina HOM05D006114 ORTHO05D007609 2.2e-109 399.8 373 56.3
Cfa018335 Carpinus fangiana HOM05D006114 ORTHO05D007609 3.8e-109 399.1 375 55.2
Hma1.2p1_0616F.1_g190010 Hydrangea macrophylla HOM05D006114 ORTHO05D007609 1.1e-108 397.5 376 56.1
TAR381G1603 Trochodendron aralioides HOM05D006114 ORTHO05D007609 1.4e-108 397.1 372 55.9
Nn1g06119 Nelumbo nucifera HOM05D006114 ORTHO05D007609 1.9e-108 396.7 373 55.0
QL02p024207 Quercus lobata HOM05D006114 ORTHO05D007609 5.5e-108 395.2 378 56.3
Sed0024386 Sechium edule HOM05D006114 ORTHO05D007609 5.5e-108 395.2 369 55.3
BraA07t30466Z Brassica rapa HOM05D006114 ORTHO05D007609 2.1e-107 393.3 374 54.8
PSO675G2834 Papaver somniferum HOM05D006114 ORTHO05D007609 2.1e-107 393.3 384 53.4
A07p28250 Brassica napus HOM05D006114 ORTHO05D007609 4.6e-107 392.1 374 54.5
C06p31720 Brassica napus HOM05D006114 ORTHO05D007609 4.6e-107 392.1 374 54.5
BolC6t38302H Brassica oleracea HOM05D006114 ORTHO05D007609 4.6e-107 392.1 374 54.5
Potri.005G190400 Populus trichocarpa HOM05D006114 ORTHO05D007609 4.6e-107 392.1 378 55.6
Cpa.g.sc21.182 Carica papaya HOM05D006114 ORTHO05D007609 1.0e-106 391.0 374 57.0
PSO541G3056 Papaver somniferum HOM05D006114 ORTHO05D007609 1.0e-106 391.0 387 52.5
TWI34G0188 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 1.0e-106 391.0 376 55.3
Hund26709 Selenicereus undatus HOM05D006114 ORTHO05D000105 6.7e-106 388.3 400 52.8
Atru.chr13.2189 Acer truncatum HOM05D006114 ORTHO05D007609 8.7e-106 387.9 374 54.8
TAR625G1556 Trochodendron aralioides HOM05D006114 ORTHO05D007609 8.7e-106 387.9 372 55.4
BcaB02g07084 Brassica carinata HOM05D006114 ORTHO05D007609 1.5e-105 387.1 375 54.1
BcaC08g45501 Brassica carinata HOM05D006114 ORTHO05D007609 1.5e-105 387.1 374 54.0
AL2G37050 Arabidopsis lyrata HOM05D006114 ORTHO05D007609 2.5e-105 386.3 382 53.9
FAN15G0766 Fragaria x ananassa HOM05D006114 ORTHO05D007609 2.5e-105 386.3 370 55.1
THA.LOC104812044 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 3.3e-105 386.0 385 52.7
THA.LOC104813707 Tarenaya hassleriana HOM05D006114 ORTHO05D007609 4.3e-105 385.6 380 52.6
SpUn0346_0010 Schrenkiella parvula HOM05D006114 ORTHO05D007609 9.6e-105 384.4 380 53.4
AT1G76920 Arabidopsis thaliana HOM05D006114 ORTHO05D007609 1.3e-104 384.0 379 53.8
CAN.G175.3 Capsicum annuum HOM05D006114 ORTHO05D007609 1.3e-104 384.0 378 52.1
Potri.002G069900 Populus trichocarpa HOM05D006114 ORTHO05D007609 3.7e-104 382.5 382 55.0
BcaB05g25019 Brassica carinata HOM05D006114 ORTHO05D007609 4.8e-104 382.1 371 53.4
Carub.0002s2378 Capsella rubella HOM05D006114 ORTHO05D007609 4.8e-104 382.1 384 52.3
AUR62039242 Chenopodium quinoa HOM05D006114 ORTHO05D007609 6.3e-104 381.7 388 53.1
Solyc04g071130.1 Solanum lycopersicum HOM05D006114 ORTHO05D007609 1.4e-103 380.6 374 52.4
Sopen04g027070 Solanum pennellii HOM05D006114 ORTHO05D007609 1.4e-103 380.6 374 52.4
TWI32G1226 Tripterygium wilfordii HOM05D006114 ORTHO05D007609 1.8e-103 380.2 374 55.1
EL10Ac7g15790 Beta vulgaris HOM05D006114 ORTHO05D007609 4.1e-103 379.0 392 52.0
PGSC0003DMG400000797 Solanum tuberosum HOM05D006114 ORTHO05D007609 4.1e-103 379.0 374 52.1
Lj7A371T45 Lonicera japonica HOM05D006114 ORTHO05D007609 9.0e-103 377.9 370 53.8
Eucgr.F02716 Eucalyptus grandis HOM05D006114 ORTHO05D007609 1.2e-102 377.5 393 53.4
Thhalv10019824m.g Eutrema salsugineum HOM05D006114 ORTHO05D007609 1.2e-102 377.5 378 52.6
Aa31LG4G6950 Aethionema arabicum HOM05D006114 ORTHO05D007609 1.5e-102 377.1 379 52.2
Nitab4.5_0006608g0010 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.5e-102 377.1 382 50.8
DCAR_010096 Daucus carota HOM05D006114 ORTHO05D007609 1.0e-101 374.4 376 54.3
Rhsim05G0182400 Rhododendron simsii HOM05D006114 ORTHO05D007609 1.0e-101 374.4 370 54.3
PGR042G1057 Punica granatum HOM05D006114 ORTHO05D007609 1.3e-101 374.0 395 52.4
PGR122G0006 Punica granatum HOM05D006114 ORTHO05D007609 1.3e-101 374.0 395 52.4
COL.COLO4_24672 Corchorus olitorius HOM05D006114 ORTHO05D007609 6.5e-101 371.7 386 52.8
Lsat_1_v5_gn_1_8460 Lactuca sativa HOM05D006114 ORTHO05D007609 5.5e-100 368.6 376 51.6
Manes.02G177800 Manihot esculenta HOM05D006114 ORTHO05D007609 1.6e-99 367.1 403 48.9
Aqoxy5G02132 Aquilegia oxysepala HOM05D006114 ORTHO05D007609 2.7e-99 366.3 379 51.2
Ah.08g215970 Amaranthus hybridus HOM05D006114 ORTHO05D007609 6.1e-99 365.2 380 52.4
Duzib116G0820 Durio zibethinus HOM05D006114 ORTHO05D007609 6.1e-99 365.2 389 51.4
Thecc.08G149100 Theobroma cacao HOM05D006114 ORTHO05D007609 6.1e-99 365.2 385 52.2
Nitab4.5_0000032g0440 Nicotiana tabacum HOM05D006114 ORTHO05D007609 1.3e-98 364.0 376 49.7
Duzib041G0274 Durio zibethinus HOM05D006114 ORTHO05D007609 3.9e-98 362.5 385 51.9
Gohir.D05G271900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 1.5e-97 360.5 386 51.8
Gorai.009G284900 Gossypium raimondii HOM05D006114 ORTHO05D007609 1.5e-97 360.5 386 51.8
Sed0010814 Sechium edule HOM05D006114 ORTHO05D007609 1.5e-97 360.5 367 52.0
Gohir.A05G269900 Gossypium hirsutum HOM05D006114 ORTHO05D007609 2.5e-97 359.8 386 51.6
Sabra02G0054600 Salix brachista HOM05D006114 ORTHO05D007609 2.2e-96 356.7 358 54.5
Cc10_g14550 Coffea canephora HOM05D006114 ORTHO05D007609 3.8e-93 345.9 378 48.7
Lj7A371T46 Lonicera japonica HOM05D006114 ORTHO05D007609 2.5e-92 343.2 367 49.9
FvH4_2g14200 Fragaria vesca HOM05D006114 ORTHO05D007609 3.2e-92 342.8 304 57.2
Migut.C01010 Erythranthe guttata HOM05D006114 ORTHO05D007609 3.3e-89 332.8 383 46.7
Oeu032982.1 Olea europaea HOM05D006114 ORTHO05D007609 1.3e-88 330.9 380 45.0
SalBow7G1400 Salvia bowleyana HOM05D006114 ORTHO05D007609 3.7e-88 329.3 366 47.3
FAN24G0263 Fragaria x ananassa HOM05D006114 ORTHO05D007609 4.1e-87 325.9 292 56.5
MSTRG.1356 Avicennia marina HOM05D006114 ORTHO05D007609 9.1e-87 324.7 375 45.1
HanXRQChr02g0039921 Helianthus annuus HOM05D006114 ORTHO05D007609 1.2e-83 314.3 305 52.5
MSTRG.22368 Avicennia marina HOM05D006114 ORTHO05D007609 4.7e-83 312.4 375 45.3
Psat0s3019g0080 Pisum sativum HOM05D006114 ORTHO05D007609 1.4e-82 310.8 215 71.2
unitig_749.g13920 Utricularia gibba HOM05D006114 ORTHO05D007609 2.3e-82 310.1 378 43.7
Peaxi162Scf00263g01414 Petunia axillaris HOM05D006114 ORTHO05D007609 4.4e-81 305.8 283 53.0
HPP92_009302 Vanilla planifolia HOM05D006114 ORTHO05D007609 3.6e-75 286.2 387 43.2
CARHR070420 Cardamine hirsuta HOM05D006114 ORTHO05D007609 2.3e-74 283.5 301 52.2
ECA247G0840 Erigeron canadensis HOM05D006114 ORTHO05D007609 3.7e-72 276.2 251 54.2
MBI17_g34067_MAGBIO Magnolia biondii HOM05D006114 ORTHO05D007609 4.5e-70 269.2 347 45.0
TPR.G36696 Trifolium pratense HOM05D006114 ORTHO05D007609 1.6e-67 260.8 163 76.1
Zm00001eb434300 Zea mays HOM05D006114 ORTHO05D007609 6.1e-67 258.8 396 38.9
FAN27G1342 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.8e-66 257.3 201 61.7
AUR62009796 Chenopodium quinoa HOM05D006114 ORTHO05D007609 1.4e-63 247.7 201 59.7
Zm00001eb076050 Zea mays HOM05D006114 ORTHO05D007609 2.5e-60 236.9 386 37.0
GSVIVG01034899001 Vitis vinifera HOM05D006114 ORTHO05D007609 5.2e-58 229.2 364 39.0
Migut.N03218 Erythranthe guttata HOM05D006114 ORTHO05D007609 2.6e-57 226.9 388 37.4
Os04g0686700 Oryza sativa ssp. japonica HOM05D006114 ORTHO05D007609 3.7e-56 223.0 320 40.3
SGA_v2.0_scaffold48G17978 Striga asiatica HOM05D006114 ORTHO05D007609 5.8e-41 172.6 155 51.0
unitig_26.g9904 Utricularia gibba HOM05D006114 ORTHO05D007609 1.0e-37 161.8 247 39.3
SEGI_30218 Sequoiadendron giganteum HOM05D006114 ORTHO05D007609 6.6e-37 159.1 376 29.0
Oeu046020.2 Olea europaea HOM05D006114 ORTHO05D007609 9.5e-36 155.2 371 30.7
Zm00001eb268540 Zea mays HOM05D006114 ORTHO05D007609 6.2e-35 152.5 179 44.7
AUR62009795 Chenopodium quinoa HOM05D006114 ORTHO05D007609 4.4e-33 146.4 205 41.5
unitig_26.g9903 Utricularia gibba HOM05D006114 ORTHO05D007609 4.4e-33 146.4 110 56.4
AUR62039241 Chenopodium quinoa HOM05D006114 ORTHO05D007609 2.4e-31 140.6 213 40.8
FAN14G0378 Fragaria x ananassa HOM05D006114 ORTHO05D007609 1.3e-21 108.2 133 48.1
Zm00001eb182860 Zea mays HOM05D006114 ORTHO05D007609 1.1e-20 105.1 144 38.2
ATR0772G199 Amborella trichopoda HOM05D006114 ORTHO05D007609 2.1e-19 100.9 195 34.4
AagrBONN_evm.TU.Sc2ySwM_228.846 Anthoceros agrestis HOM05D002809 ORTHO05D004939 3.4e-17 93.6 367 26.2
SMO367G1056 Selaginella moellendorffii HOM05D002809 ORTHO05D030467 1.0e-13 82.0 369 25.7
Mapoly0101s0058 Marchantia polymorpha HOM05D002809 ORTHO05D004939 1.3e-13 81.6 370 25.1
Zm00001eb268560 Zea mays HOM05D006114 ORTHO05D007609 3.0e-13 80.5 104 41.3
Zm00001eb080980 Zea mays HOM05D006114 ORTHO05D007609 3.9e-13 80.1 104 42.3
Mapoly0137s0025 Marchantia polymorpha HOM05D004302 ORTHO05D004939 5.1e-13 79.7 380 25.5
Pp3c7_9930 Physcomitrium patens HOM05D002809 ORTHO05D004939 5.1e-13 79.7 374 25.7
ATR0763G218 Amborella trichopoda HOM05D005977 ORTHO05D007546 6.6e-13 79.3 372 26.1
FvH4_3g14282 Fragaria vesca HOM05D006114 ORTHO05D007609 8.7e-13 79.0 104 47.1
Zm00001eb346130 Zea mays HOM05D003599 ORTHO05D004221 8.7e-13 79.0 87 47.1
CDE08G0205 Ceratophyllum demersum HOM05D006114 ORTHO05D007609 2.1e-11 74.3 84 47.6
Zm00001eb243390 Zea mays HOM05D006114 ORTHO05D007609 3.6e-11 73.6 88 42.0
arahy.Tifrunner.gnm1.ann1.0BPN3L Arachis hypogaea HOM05D000034 ORTHO05D000037 4.8e-11 73.2 58 60.3
unitig_899.g15112 Utricularia gibba HOM05D004302 ORTHO05D004939 6.2e-11 72.8 352 26.7
Mapoly0170s0023 Marchantia polymorpha HOM05D002809 ORTHO05D004563 1.1e-10 72.0 361 23.5
SEGI_36099 Sequoiadendron giganteum HOM05D003005 ORTHO05D030467 1.4e-10 71.6 393 24.2
Zm00001eb080990 Zea mays HOM05D006114 ORTHO05D007609 4.0e-10 70.1 69 49.3
ClCG09G009130 Citrullus lanatus HOM05D007853 ORTHO05D009873 1.5e-09 68.2 316 25.6
THA.LOC104817327 Tarenaya hassleriana HOM05D003005 ORTHO05D004170 2.6e-09 67.4 395 25.1
Glyma.08G253600 Glycine max HOM05D004302 ORTHO05D004939 3.4e-09 67.0 342 26.3
Mapoly0005s0140 Marchantia polymorpha HOM05D002809 ORTHO05D004563 5.8e-09 66.2 381 26.5
Mapoly0125s0029 Marchantia polymorpha HOM05D002809 ORTHO05D009091 5.8e-09 66.2 299 27.8
Pp3c14_23730 Physcomitrium patens HOM05D002809 ORTHO05D004563 5.8e-09 66.2 361 23.0
Ca_06955_v3 Cicer arietinum L. HOM05D004302 ORTHO05D004939 9.9e-09 65.5 344 25.9
Lalb_Chr04g0258341 Lupinus albus HOM05D004302 ORTHO05D004939 1.3e-08 65.1 342 26.0
Lj1g0002235 Lotus japonicus HOM05D004302 ORTHO05D004939 1.7e-08 64.7 341 26.1
VMungo1383G2819 Vigna mungo HOM05D006114 ORTHO05D007609 4.9e-08 63.2 66 48.5
Glyma.18G275900 Glycine max HOM05D004302 ORTHO05D004939 6.4e-08 62.8 342 26.0
VMungo1383G1338 Vigna mungo HOM05D004302 ORTHO05D004939 8.4e-08 62.4 342 25.7
Lalb_Chr10g0092641 Lupinus albus HOM05D004302 ORTHO05D004939 1.1e-07 62.0 343 24.8
PSO478G1885 Papaver somniferum HOM05D002809 ORTHO05D004563 1.1e-07 62.0 293 23.5
SEGI_08151 Sequoiadendron giganteum HOM05D002809 ORTHO05D009091 1.1e-07 62.0 127 33.1
TPR.G23831 Trifolium pratense HOM05D005977 ORTHO05D007546 1.4e-07 61.6 384 23.2
Pp3c3_5460 Physcomitrium patens HOM05D002809 ORTHO05D004563 1.9e-07 61.2 396 26.0
Migut.K00952 Erythranthe guttata HOM05D002809 ORTHO05D004563 2.4e-07 60.8 297 24.9
Lalb_Chr18g0044251 Lupinus albus HOM05D003005 ORTHO05D004170 3.2e-07 60.5 392 22.7
Cc10_g05770 Coffea canephora HOM05D007423 ORTHO05D009091 5.4e-07 59.7 232 26.3
PSO017G6955 Papaver somniferum HOM05D002809 ORTHO05D004563 5.4e-07 59.7 293 23.2
Migut.L01495 Erythranthe guttata HOM05D004302 ORTHO05D004939 7.1e-07 59.3 352 24.7
Ah.04g164550 Amaranthus hybridus HOM05D005977 ORTHO05D007546 1.6e-06 58.2 388 23.2
TPR.G3302 Trifolium pratense HOM05D004302 ORTHO05D004939 2.1e-06 57.8 353 25.8
Duzib116G0599 Durio zibethinus HOM05D007423 ORTHO05D009091 4.6e-06 56.6 296 26.4
Hma1.2p1_0819F.1_g223720 Hydrangea macrophylla HOM05D007423 ORTHO05D009091 4.6e-06 56.6 185 30.8
FvH4_6g34681 Fragaria vesca HOM05D006114 ORTHO05D007609 7.9e-06 55.8 62 48.4


User provided reference genes

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