Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g039830 Medicago truncatula HOM05D007964 ORTHO05D010090 2.4e-65 251.9 120 100.0
Psat0s1172g0240 Pisum sativum HOM05D007964 ORTHO05D010090 3.2e-57 224.9 120 88.3
Ca_04662_v3 Cicer arietinum L. HOM05D007964 ORTHO05D010090 3.0e-55 218.4 121 84.3
Glyma.02G078400 Glycine max HOM05D007964 ORTHO05D010090 1.3e-45 186.4 120 72.5
Glyma.16G161400 Glycine max HOM05D007964 ORTHO05D010090 1.0e-42 176.8 122 69.7
Phvul.004G087600 Phaseolus vulgaris HOM05D007964 ORTHO05D010090 1.0e-42 176.8 120 70.8
Ciclev10003908m.g Citrus clementina HOM05D007964 ORTHO05D010090 8.5e-34 147.1 138 57.2
Lalb_Chr19g0130001 Lupinus albus HOM05D007964 ORTHO05D010090 1.1e-33 146.7 123 68.3
Manes.02G184300 Manihot esculenta HOM05D007964 ORTHO05D010090 4.7e-32 141.4 137 54.7
MELO3C019968.2 Cucumis melo HOM05D007964 ORTHO05D010090 6.1e-32 141.0 139 54.7
ClCG08G007250 Citrullus lanatus HOM05D007964 ORTHO05D010090 8.0e-32 140.6 144 53.5
Prupe.8G043200 Prunus persica HOM05D007964 ORTHO05D010090 1.0e-31 140.2 125 60.8
CsaV3_6G004920 Cucumis sativus L. HOM05D007964 ORTHO05D010090 3.9e-31 138.3 139 53.2
Cfa018267 Carpinus fangiana HOM05D007964 ORTHO05D010090 6.7e-31 137.5 136 55.1
Atru.chr13.1988 Acer truncatum HOM05D007964 ORTHO05D010090 2.6e-30 135.6 141 53.9
Haze_17821 Corylus avellana HOM05D007964 ORTHO05D010090 2.6e-30 135.6 136 53.7
QL02p037092 Quercus lobata HOM05D007964 ORTHO05D010090 2.6e-30 135.6 132 56.8
CiPaw.15G011700 Carya illinoinensis HOM05D007964 ORTHO05D010090 3.3e-30 135.2 125 58.4
Potri.005G198200 Populus trichocarpa HOM05D007964 ORTHO05D010090 5.7e-30 134.4 135 54.1
Sabra05G0151100 Salix brachista HOM05D007964 ORTHO05D010090 7.4e-30 134.0 134 53.0
QL02p036563 Quercus lobata HOM05D007964 ORTHO05D010090 9.7e-30 133.7 132 56.1
Sed0027049 Sechium edule HOM05D007964 ORTHO05D010090 2.2e-29 132.5 145 51.7
Oeu046067.1 Olea europaea HOM05D007964 ORTHO05D010090 3.7e-29 131.7 123 52.8
Thecc.08G162400 Theobroma cacao HOM05D007964 ORTHO05D010090 4.8e-29 131.3 135 52.6
Sed0009872 Sechium edule HOM05D007964 ORTHO05D010090 6.3e-29 131.0 145 49.7
SalBow6G4546 Salvia bowleyana HOM05D007964 ORTHO05D010090 8.2e-29 130.6 127 52.0
FAN27G1192 Fragaria x ananassa HOM05D007964 ORTHO05D010090 4.5e-27 124.8 126 53.2
Ah.05g167820 Amaranthus hybridus HOM05D007964 ORTHO05D010090 7.7e-27 124.0 124 51.6
FvH4_2g12880 Fragaria vesca HOM05D007964 ORTHO05D010090 1.0e-26 123.6 124 51.6
FAN24G2710 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.0e-26 123.6 124 51.6
EL10Ac1g01623 Beta vulgaris HOM05D007964 ORTHO05D010090 1.3e-26 123.2 125 50.4
FAN20G1166 Fragaria x ananassa HOM05D007964 ORTHO05D010090 1.3e-26 123.2 124 51.6
PGR042G2516 Punica granatum HOM05D007964 ORTHO05D010090 1.7e-26 122.9 117 54.7
Hma1.2p1_0678F.1_g202130 Hydrangea macrophylla HOM05D007964 ORTHO05D010090 5.0e-26 121.3 122 54.9
RcHm_v2.0_Chr6g0273981 Rosa chinensis HOM05D007964 ORTHO05D010090 1.1e-25 120.2 127 52.8
CSS0006430 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 5.5e-25 117.9 134 50.0
CSS0037867 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 5.5e-25 117.9 134 50.0
COL.COLO4_29112 Corchorus olitorius HOM05D007964 ORTHO05D010090 7.2e-25 117.5 136 49.3
Migut.N02947 Erythranthe guttata HOM05D007964 ORTHO05D010090 2.7e-24 115.5 125 49.6
PGSC0003DMG400025075 Solanum tuberosum HOM05D007964 ORTHO05D010090 3.6e-24 115.2 131 49.6
Migut.O00757 Erythranthe guttata HOM05D007964 ORTHO05D010090 6.1e-24 114.4 125 48.8
CANSAT25G1394 Cannabis sativa HOM05D007964 ORTHO05D010090 1.0e-23 113.6 109 51.4
AUR62026621 Chenopodium quinoa HOM05D007964 ORTHO05D010090 1.4e-23 113.2 125 49.6
Lsat_1_v5_gn_6_100061 Lactuca sativa HOM05D007964 ORTHO05D010090 1.8e-23 112.8 133 53.4
Aa31LG4G8900 Aethionema arabicum HOM05D007964 ORTHO05D010090 2.3e-23 112.5 123 49.6
AUR62034908 Chenopodium quinoa HOM05D007964 ORTHO05D010090 2.3e-23 112.5 125 49.6
Aqoxy6G00437 Aquilegia oxysepala HOM05D007964 ORTHO05D010090 4.0e-23 111.7 121 43.8
CARHR291050 Cardamine hirsuta HOM05D007964 ORTHO05D010090 4.0e-23 111.7 133 49.6
SGA_v2.0_scaffold54G19690 Striga asiatica HOM05D007964 ORTHO05D010090 4.0e-23 111.7 129 50.4
Gohir.A06G112000 Gossypium hirsutum HOM05D007964 ORTHO05D010090 5.2e-23 111.3 138 46.4
Rhsim06G0092800 Rhododendron simsii HOM05D007964 ORTHO05D010090 1.2e-22 110.2 127 46.5
AT1G71740 Arabidopsis thaliana HOM05D007964 ORTHO05D010090 3.3e-22 108.6 126 49.2
Gorai.010G134000 Gossypium raimondii HOM05D007964 ORTHO05D010090 3.3e-22 108.6 124 49.2
Sp5g26770 Schrenkiella parvula HOM05D007964 ORTHO05D010090 5.7e-22 107.8 113 54.9
AL2G31310 Arabidopsis lyrata HOM05D007964 ORTHO05D010090 7.5e-22 107.5 127 48.0
Gohir.D06G116200 Gossypium hirsutum HOM05D007964 ORTHO05D010090 7.5e-22 107.5 124 48.4
Peaxi162Scf00360g00092 Petunia axillaris HOM05D007964 ORTHO05D010090 1.3e-21 106.7 133 48.1
BolC6t39631H Brassica oleracea HOM05D007964 ORTHO05D010090 1.7e-21 106.3 101 58.4
Potri.002G062950 Populus trichocarpa HOM05D007964 ORTHO05D010090 2.2e-21 105.9 126 46.8
Nn5g28859 Nelumbo nucifera HOM05D007964 ORTHO05D010090 2.8e-21 105.5 123 48.0
A07p37890 Brassica napus HOM05D007964 ORTHO05D010090 1.1e-20 103.6 100 55.0
BraA07t31354Z Brassica rapa HOM05D007964 ORTHO05D010090 2.4e-20 102.4 130 48.5
Carub.0002s1850 Capsella rubella HOM05D007964 ORTHO05D010090 2.4e-20 102.4 114 50.9
BcaC08g46600 Brassica carinata HOM05D007964 ORTHO05D010090 4.1e-20 101.7 100 54.0
C06p45790 Brassica napus HOM05D007964 ORTHO05D010090 4.1e-20 101.7 100 54.0
Thhalv10019796m.g Eutrema salsugineum HOM05D007964 ORTHO05D010090 7.7e-19 97.4 99 52.5
THA.LOC104810508 Tarenaya hassleriana HOM05D007964 ORTHO05D010090 7.7e-19 97.4 111 49.5
Nitab4.5_0003178g0050 Nicotiana tabacum HOM05D007964 ORTHO05D010090 1.0e-18 97.1 99 50.5
Nitab4.5_0003443g0080 Nicotiana tabacum HOM05D007964 ORTHO05D010090 3.8e-18 95.1 100 53.0
CAN.G1183.20 Capsicum annuum HOM05D007964 ORTHO05D010090 5.0e-18 94.7 94 54.3
DCAR_001195 Daucus carota HOM05D007964 ORTHO05D010090 1.1e-17 93.6 93 54.8
Sopen04g028110 Solanum pennellii HOM05D007964 ORTHO05D010090 1.6e-16 89.7 94 48.9
HPP92_000633 Vanilla planifolia HOM05D007964 ORTHO05D010090 1.4e-12 76.6 103 35.0
CSS0037942 Camellia sinensis var. sinensis HOM05D007964 ORTHO05D010090 2.7e-11 72.4 47 72.3
Os02g0210900 Oryza sativa ssp. japonica HOM05D007964 ORTHO05D010090 1.0e-10 70.5 103 42.7
ATR1120G014 Amborella trichopoda HOM05D007964 ORTHO05D010090 7.2e-09 64.3 124 33.9
Zm00001eb205370 Zea mays HOM05D007964 ORTHO05D010090 1.2e-08 63.5 58 55.2
CDE07G1489 Ceratophyllum demersum HOM05D002803 ORTHO05D001341 3.0e-07 58.9 131 30.5
Potri.010G130600 Populus trichocarpa HOM05D002803 ORTHO05D003089 3.0e-07 58.9 52 50.0
BcaB04g17373 Brassica carinata HOM05D002803 ORTHO05D003089 8.9e-07 57.4 55 47.3
A08p04240 Brassica napus HOM05D002803 ORTHO05D003089 8.9e-07 57.4 55 47.3
C08p04510 Brassica napus HOM05D002803 ORTHO05D003089 8.9e-07 57.4 55 47.3
BolC8t47256H Brassica oleracea HOM05D002803 ORTHO05D003089 8.9e-07 57.4 55 47.3
BraA08t32452Z Brassica rapa HOM05D002803 ORTHO05D003089 8.9e-07 57.4 55 47.3
Carub.0001s3818 Capsella rubella HOM05D002803 ORTHO05D003089 8.9e-07 57.4 67 44.8
Actinidia03620 Actinidia chinensis HOM05D007501 ORTHO05D009528 1.2e-06 57.0 73 37.0
SGA_v2.0_scaffold59G20630 Striga asiatica HOM05D002803 ORTHO05D003089 1.5e-06 56.6 33 72.7
unitig_52.g17150 Utricularia gibba HOM05D002803 ORTHO05D003089 1.5e-06 56.6 106 37.7
AT1G49000 Arabidopsis thaliana HOM05D002803 ORTHO05D003089 2.0e-06 56.2 48 54.2
Haze_08443 Corylus avellana HOM05D007501 ORTHO05D009528 2.0e-06 56.2 80 32.5
CDE06G2265 Ceratophyllum demersum HOM05D002803 ORTHO05D003089 3.4e-06 55.5 34 61.8
VMungo1127G2061 Vigna mungo HOM05D007501 ORTHO05D009528 3.4e-06 55.5 81 30.9
AL1G55870 Arabidopsis lyrata HOM05D002803 ORTHO05D003089 4.4e-06 55.1 48 54.2
MSTRG.813 Avicennia marina HOM05D002803 ORTHO05D003089 4.4e-06 55.1 44 54.5
Nn3g17698 Nelumbo nucifera HOM05D002803 ORTHO05D003089 4.4e-06 55.1 34 64.7
BcaC07g37087 Brassica carinata HOM05D002803 ORTHO05D003089 5.7e-06 54.7 51 47.1
Eucgr.F01372 Eucalyptus grandis HOM05D007501 ORTHO05D009528 5.7e-06 54.7 50 48.0
HPP92_023771 Vanilla planifolia HOM05D002803 ORTHO05D003089 5.7e-06 54.7 56 46.4
Ah.02g127220 Amaranthus hybridus HOM05D002803 ORTHO05D003089 7.5e-06 54.3 102 33.3
CiPaw.16G083500 Carya illinoinensis HOM05D002803 ORTHO05D003089 7.5e-06 54.3 52 53.8
Lsat_1_v5_gn_5_24961 Lactuca sativa HOM05D002803 ORTHO05D003089 7.5e-06 54.3 42 59.5
arahy.Tifrunner.gnm1.ann1.HG0CBG Arachis hypogaea HOM05D008294 ORTHO05D010468 9.8e-06 53.9 38 55.3
arahy.Tifrunner.gnm1.ann1.RHD4AQ Arachis hypogaea HOM05D008294 ORTHO05D010468 9.8e-06 53.9 38 55.3
Sabra17G0107200 Salix brachista HOM05D008294 ORTHO05D010468 9.8e-06 53.9 52 40.4


User provided reference genes

Program Settings