Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g036740 Medicago truncatula HOM05D000823 ORTHO05D000088 7.9e-202 706.8 340 100.0
Medtr1g021295 Medicago truncatula HOM05D000823 ORTHO05D000088 8.0e-29 132.1 75 81.3
TPR.G15766 Trifolium pratense HOM05D000823 ORTHO05D000088 1.6e-24 117.9 87 62.1
Medtr1g021270 Medicago truncatula HOM05D000823 ORTHO05D000088 2.7e-24 117.1 84 66.7
Ca_13317_v3 Cicer arietinum L. HOM05D000823 ORTHO05D000088 7.8e-24 115.5 84 64.3
VMungo0647G0862 Vigna mungo HOM05D000823 ORTHO05D000088 1.7e-23 114.4 108 50.9
Psat6g011480 Pisum sativum HOM05D000823 ORTHO05D000088 2.3e-23 114.0 75 69.3
Glyma.17G245900 Glycine max HOM05D000823 ORTHO05D000088 8.6e-23 112.1 73 67.1
Glyma.14G079200 Glycine max HOM05D000823 ORTHO05D000088 1.1e-22 111.7 73 65.8
Lj5g0027331 Lotus japonicus HOM05D000823 ORTHO05D000088 1.9e-22 110.9 75 66.7
TPR.G13699 Trifolium pratense HOM05D000823 ORTHO05D000088 2.5e-22 110.5 84 64.3
arahy.Tifrunner.gnm1.ann1.8D6Z2X Arachis hypogaea HOM05D000823 ORTHO05D000088 9.5e-22 108.6 66 69.7
arahy.Tifrunner.gnm1.ann1.NFB9X0 Arachis hypogaea HOM05D000823 ORTHO05D000088 9.5e-22 108.6 66 69.7
Lalb_Chr22g0355281 Lupinus albus HOM05D000823 ORTHO05D000088 1.2e-21 108.2 81 61.7
Medtr1g021320 Medicago truncatula HOM05D000823 ORTHO05D000088 2.1e-21 107.5 75 65.3
Phvul.001G018500 Phaseolus vulgaris HOM05D000823 ORTHO05D000088 6.2e-21 105.9 66 66.7
Prupe.1G388200 Prunus persica HOM05D000823 ORTHO05D000088 3.1e-20 103.6 76 55.3
MD08G1039600 Malus domestica HOM05D000823 ORTHO05D000088 8.9e-20 102.1 77 55.8
Medtr1g021360 Medicago truncatula HOM05D000823 ORTHO05D000088 1.2e-19 101.7 73 63.0
CAN.G371.85 Capsicum annuum HOM05D000823 ORTHO05D000088 1.5e-19 101.3 101 44.6
arahy.Tifrunner.gnm1.ann1.00BQAA Arachis hypogaea HOM05D000823 ORTHO05D000088 2.0e-19 100.9 66 63.6
TPR.G13675 Trifolium pratense HOM05D000823 ORTHO05D000088 2.0e-19 100.9 99 52.5
FAN27G1265 Fragaria x ananassa HOM05D000823 ORTHO05D000088 5.8e-19 99.4 68 61.8
RcHm_v2.0_Chr6g0300031 Rosa chinensis HOM05D000823 ORTHO05D000088 5.8e-19 99.4 68 63.2
FvH4_2g40640 Fragaria vesca HOM05D000823 ORTHO05D000088 7.5e-19 99.0 68 61.8
FAN15G0917 Fragaria x ananassa HOM05D000823 ORTHO05D000088 7.5e-19 99.0 68 61.8
Hma1.2p1_0023F.1_g015270 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 7.5e-19 99.0 83 48.2
Gohir.A03G116300 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.3e-18 98.2 108 43.5
Lsat_1_v5_gn_1_19200 Lactuca sativa HOM05D000823 ORTHO05D000088 3.7e-18 96.7 81 55.6
CANSAT25G0071 Cannabis sativa HOM05D000823 ORTHO05D000088 4.9e-18 96.3 67 61.2
CsaV3_3G044580 Cucumis sativus L. HOM05D000823 ORTHO05D000088 4.9e-18 96.3 66 57.6
Peaxi162Scf01514g00024 Petunia axillaris HOM05D000823 ORTHO05D000088 4.9e-18 96.3 73 52.1
Cfa018483 Carpinus fangiana HOM05D000823 ORTHO05D000088 6.4e-18 95.9 73 56.2
Cc10_g03680 Coffea canephora HOM05D000823 ORTHO05D000088 6.4e-18 95.9 73 53.4
Gorai.005G105400 Gossypium raimondii HOM05D000823 ORTHO05D000088 6.4e-18 95.9 108 42.6
GSVIVG01009586001 Vitis vinifera HOM05D000823 ORTHO05D000088 6.4e-18 95.9 67 58.2
Sopen04g033170 Solanum pennellii HOM05D000823 ORTHO05D000088 1.1e-17 95.1 88 45.5
CiPaw.15G066400 Carya illinoinensis HOM05D000823 ORTHO05D000088 1.4e-17 94.7 67 59.7
Nitab4.5_0000068g0140 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.4e-17 94.7 73 52.1
PGR031G0338 Punica granatum HOM05D000823 ORTHO05D000088 1.4e-17 94.7 67 59.7
Solyc04g079590.3 Solanum lycopersicum HOM05D000823 ORTHO05D000088 1.4e-17 94.7 88 45.5
MSTRG.1316 Avicennia marina HOM05D000823 ORTHO05D000088 1.9e-17 94.4 73 56.2
Gohir.D02G093100 Gossypium hirsutum HOM05D000823 ORTHO05D000088 1.9e-17 94.4 108 42.6
Nitab4.5_0002280g0040 Nicotiana tabacum HOM05D000823 ORTHO05D000088 1.9e-17 94.4 73 52.1
Medtr1g021440 Medicago truncatula HOM05D000823 ORTHO05D000088 2.4e-17 94.0 66 57.6
COL.COLO4_26426 Corchorus olitorius HOM05D000823 ORTHO05D000088 4.1e-17 93.2 73 57.5
Oeu006163.1 Olea europaea HOM05D000823 ORTHO05D000088 4.1e-17 93.2 67 56.7
Ciclev10000881m.g Citrus clementina HOM05D000823 ORTHO05D000088 5.4e-17 92.8 67 56.7
Manes.05G168900 Manihot esculenta HOM05D000823 ORTHO05D000088 5.4e-17 92.8 101 44.6
SGA_v2.0_scaffold82G26218 Striga asiatica HOM05D000823 ORTHO05D000088 5.4e-17 92.8 67 56.7
Hma1.2p1_0260F.1_g104520 Hydrangea macrophylla HOM05D000823 ORTHO05D000088 7.0e-17 92.4 94 44.7
Thecc.08G016800 Theobroma cacao HOM05D000823 ORTHO05D000088 7.0e-17 92.4 67 58.2
HanXRQChr04g0104181 Helianthus annuus HOM05D000823 ORTHO05D000088 9.2e-17 92.0 73 53.4
Migut.C00649 Erythranthe guttata HOM05D000823 ORTHO05D000088 1.2e-16 91.7 67 56.7
QL02p006444 Quercus lobata HOM05D000823 ORTHO05D000088 1.6e-16 91.3 67 59.7
Duzib093G1908 Durio zibethinus HOM05D000823 ORTHO05D000088 2.0e-16 90.9 73 53.4
MD15G1034200 Malus domestica HOM05D000823 ORTHO05D000088 2.0e-16 90.9 77 50.6
Dinv39357 Davidia involucrata HOM05D000823 ORTHO05D000088 2.7e-16 90.5 66 57.6
Medtr1g021330 Medicago truncatula HOM05D000823 ORTHO05D000088 3.5e-16 90.1 65 61.5
ECA247G3085 Erigeron canadensis HOM05D000823 ORTHO05D000088 4.6e-16 89.7 66 57.6
DCAR_012760 Daucus carota HOM05D000823 ORTHO05D000088 7.8e-16 89.0 67 49.3
Rhsim07G0234100 Rhododendron simsii HOM05D000823 ORTHO05D000088 1.3e-15 88.2 67 55.2
vmacro04480 Vaccinium macrocarpon HOM05D000823 ORTHO05D000088 1.3e-15 88.2 67 55.2
SalBow7G0768 Salvia bowleyana HOM05D000823 ORTHO05D000088 2.3e-15 87.4 67 53.7
TWI12G0966 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 2.3e-15 87.4 67 53.7
Actinidia38035 Actinidia chinensis HOM05D000823 ORTHO05D000088 5.0e-15 86.3 75 52.0
Potri.014G036800 Populus trichocarpa HOM05D000823 ORTHO05D000088 6.6e-15 85.9 67 55.2
Sabra14G0026500 Salix brachista HOM05D000823 ORTHO05D000088 8.6e-15 85.5 67 56.7
Atru.chr13.593 Acer truncatum HOM05D000823 ORTHO05D000088 1.5e-14 84.7 73 50.7
THA.LOC104803403 Tarenaya hassleriana HOM05D000823 ORTHO05D000088 1.9e-14 84.3 66 54.5
Eucgr.F02399 Eucalyptus grandis HOM05D000823 ORTHO05D000088 2.5e-14 84.0 67 52.2
Psat2g024080 Pisum sativum HOM05D000823 ORTHO05D000088 4.3e-14 83.2 69 59.4
EL10Ac1g01749 Beta vulgaris HOM05D000823 ORTHO05D000088 7.3e-14 82.4 68 55.9
Medtr1g021350 Medicago truncatula HOM05D000823 ORTHO05D000088 2.1e-13 80.9 77 57.1
MELO3C018249.2 Cucumis melo HOM05D000823 ORTHO05D000088 2.8e-13 80.5 53 58.5
Cpa.g.c39547 Carica papaya HOM05D000823 ORTHO05D000088 4.7e-13 79.7 66 51.5
TPR.G15757 Trifolium pratense HOM05D000823 ORTHO05D000088 4.7e-13 79.7 86 50.0
TPR.G34489 Trifolium pratense HOM05D000823 ORTHO05D000088 6.8e-12 75.9 62 58.1
AUR62033880 Chenopodium quinoa HOM05D000823 ORTHO05D000088 2.0e-11 74.3 68 48.5
Ah.11g043200 Amaranthus hybridus HOM05D000823 ORTHO05D000088 3.7e-10 70.1 68 45.6
TPR.G17195 Trifolium pratense HOM05D021335 ORTHO05D411244 1.4e-09 68.2 67 56.7
Hund26609 Selenicereus undatus HOM05D000823 ORTHO05D000088 3.2e-09 67.0 69 47.8
TPR.G726 Trifolium pratense HOM05D000823 ORTHO05D000088 2.7e-08 63.9 63 52.4
TPR.G32518 Trifolium pratense HOM05D000823 ORTHO05D000088 4.6e-08 63.2 66 42.4
Medtr1g021435 Medicago truncatula HOM05D000823 ORTHO05D000088 1.0e-07 62.0 77 39.0
Medtr1g021410 Medicago truncatula HOM05D000823 ORTHO05D000088 1.3e-07 61.6 66 40.9
QL11p039132 Quercus lobata HOM05D000823 ORTHO05D000088 1.3e-07 61.6 80 37.5
Sc15g0006570 Simmondsia chinensis HOM05D000823 ORTHO05D000088 1.3e-07 61.6 67 43.3
TAR625G1233 Trochodendron aralioides HOM05D000823 ORTHO05D000088 6.6e-07 59.3 65 44.6
Medtr1g021380 Medicago truncatula HOM05D000823 ORTHO05D000088 1.5e-06 58.2 66 39.4
Medtr8g041650 Medicago truncatula HOM05D000022 ORTHO05D000071 2.5e-06 57.4 29 86.2
Hund29104 Selenicereus undatus HOM05D008449 ORTHO05D010615 3.3e-06 57.0 59 40.7
TPR.G16355 Trifolium pratense HOM05D000022 ORTHO05D000071 7.3e-06 55.8 29 82.8
TWI79G1075 Tripterygium wilfordii HOM05D000823 ORTHO05D000088 7.3e-06 55.8 78 35.9


User provided reference genes

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