Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g034725 Medicago truncatula HOM05D004314 ORTHO05D005627 1.5e-25 118.6 55 100.0
TPR.G2844 Trifolium pratense HOM05D004314 ORTHO05D005627 1.4e-12 75.5 41 85.4
Medtr4g093570 Medicago truncatula HOM05D004314 ORTHO05D005627 3.2e-12 74.3 41 82.9
Os07g0485100 Oryza sativa ssp. japonica HOM05D004314 ORTHO05D005627 3.2e-12 74.3 41 78.0
Ca_18382_v3 Cicer arietinum L. HOM05D004314 ORTHO05D005627 9.3e-12 72.8 41 82.9
Lj4g0019883 Lotus japonicus HOM05D004314 ORTHO05D005627 9.3e-12 72.8 41 82.9
Lalb_Chr05g0217821 Lupinus albus HOM05D004314 ORTHO05D005627 9.3e-12 72.8 41 82.9
Medtr4g093580 Medicago truncatula HOM05D004314 ORTHO05D005627 9.3e-12 72.8 37 89.2
Psat7g101160 Pisum sativum HOM05D004314 ORTHO05D005627 9.3e-12 72.8 41 82.9
arahy.Tifrunner.gnm1.ann1.1Z5YUN Arachis hypogaea HOM05D004314 ORTHO05D005627 1.2e-11 72.4 41 80.5
arahy.Tifrunner.gnm1.ann1.NRM1UC Arachis hypogaea HOM05D004314 ORTHO05D005627 1.2e-11 72.4 41 80.5
Glyma.07G182100 Glycine max HOM05D004314 ORTHO05D005627 1.2e-11 72.4 41 80.5
MSTRG.5286 Avicennia marina HOM05D004314 ORTHO05D005627 2.1e-11 71.6 41 80.5
TPR.G22394 Trifolium pratense HOM05D004314 ORTHO05D005627 2.1e-11 71.6 37 89.2
QL11p025244 Quercus lobata HOM05D004314 ORTHO05D005627 3.5e-11 70.9 41 78.0
Zm00001eb321550 Zea mays HOM05D004314 ORTHO05D005627 3.5e-11 70.9 41 78.0
CANSAT54G1432 Cannabis sativa HOM05D004314 ORTHO05D005627 4.6e-11 70.5 41 75.6
CAN.G1223.2 Capsicum annuum HOM05D004314 ORTHO05D005627 4.6e-11 70.5 41 75.6
PSO675G0906 Papaver somniferum HOM05D004314 ORTHO05D005627 4.6e-11 70.5 41 75.6
unitig_744.g24190 Utricularia gibba HOM05D004314 ORTHO05D005627 4.6e-11 70.5 41 73.2
FvH4_2g11570 Fragaria vesca HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
FAN02G2826 Fragaria x ananassa HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
FAN15G2873 Fragaria x ananassa HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
FAN24G0404 Fragaria x ananassa HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
PSO541G1934 Papaver somniferum HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 73.2
RcHm_v2.0_Chr6g0270931 Rosa chinensis HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
Solyc10g047630.2 Solanum lycopersicum HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
Sopen10g018040 Solanum pennellii HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
PGSC0003DMG400029019 Solanum tuberosum HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 75.6
HPP92_014474 Vanilla planifolia HOM05D004314 ORTHO05D005627 6.1e-11 70.1 41 70.7
CiPaw.06G157900 Carya illinoinensis HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 75.6
CDE02G1136 Ceratophyllum demersum HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
Manes.07G041800 Manihot esculenta HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
Nn5g29880 Nelumbo nucifera HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
Peaxi162Scf00003g03234 Petunia axillaris HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
Sabra07G0094400 Salix brachista HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
TWI59G0405 Tripterygium wilfordii HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
TAR381G1143 Trochodendron aralioides HOM05D004314 ORTHO05D005627 7.9e-11 69.7 41 73.2
Eucgr.G00868 Eucalyptus grandis HOM05D004314 ORTHO05D005627 1.0e-10 69.3 41 73.2
Thhalv10004324m.g Eutrema salsugineum HOM05D004314 ORTHO05D005627 1.0e-10 69.3 41 73.2
BraA06t26047Z Brassica rapa HOM05D004314 ORTHO05D005627 1.3e-10 68.9 41 75.6
Duzib248G0634 Durio zibethinus HOM05D004314 ORTHO05D005627 1.3e-10 68.9 41 68.3
Oeu014196.1 Olea europaea HOM05D004314 ORTHO05D005627 1.8e-10 68.6 41 75.6
Phvul.002G213100 Phaseolus vulgaris HOM05D004314 ORTHO05D005627 1.8e-10 68.6 41 78.0
SalBow6G1754 Salvia bowleyana HOM05D004314 ORTHO05D005627 1.8e-10 68.6 41 70.7
SalBow6G4888 Salvia bowleyana HOM05D004314 ORTHO05D005627 1.8e-10 68.6 41 70.7
SGA_v2.0_scaffold83G26378 Striga asiatica HOM05D004314 ORTHO05D005627 1.8e-10 68.6 41 75.6
Thecc.02G129100 Theobroma cacao HOM05D004314 ORTHO05D005627 1.8e-10 68.6 41 70.7
BcaNung06256 Brassica carinata HOM05D004314 ORTHO05D005627 2.3e-10 68.2 41 73.2
A06p31050 Brassica napus HOM05D004314 ORTHO05D005627 2.3e-10 68.2 41 73.2
Sp2g27460 Schrenkiella parvula HOM05D004314 ORTHO05D005627 2.3e-10 68.2 41 73.2
SEGI_34858 Sequoiadendron giganteum HOM05D004314 ORTHO05D005627 2.3e-10 68.2 41 75.6
vmacro01861 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 2.3e-10 68.2 41 75.6
Atru.chr6.1274 Acer truncatum HOM05D004314 ORTHO05D005627 3.0e-10 67.8 41 73.2
CSS0001562 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 3.0e-10 67.8 41 70.7
CSS0022890 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 3.0e-10 67.8 41 70.7
DCAR_021906 Daucus carota HOM05D004314 ORTHO05D005627 3.0e-10 67.8 41 73.2
Dinv24147 Davidia involucrata HOM05D004314 ORTHO05D005627 3.0e-10 67.8 41 73.2
Carub.0008s2517 Capsella rubella HOM05D004314 ORTHO05D005627 3.9e-10 67.4 41 73.2
Migut.B00548 Erythranthe guttata HOM05D004314 ORTHO05D005627 3.9e-10 67.4 41 75.6
Prupe.8G070200 Prunus persica HOM05D004314 ORTHO05D005627 3.9e-10 67.4 41 73.2
Actinidia02394 Actinidia chinensis HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
BcaC04g23320 Brassica carinata HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
A09p08650 Brassica napus HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
C09p09760 Brassica napus HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
BolC9t53887H Brassica oleracea HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
BraA09t36514Z Brassica rapa HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
CSS0015344 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
CSS0039933 Camellia sinensis var. sinensis HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
CARHR278310 Cardamine hirsuta HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 70.7
Cfa005737 Carpinus fangiana HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 73.2
Haze_10517 Corylus avellana HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 73.2
Gohir.A12G016600 Gossypium hirsutum HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 73.2
Gohir.D07G103100 Gossypium hirsutum HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 73.2
Gorai.008G017500 Gossypium raimondii HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 73.2
MD10G1054600 Malus domestica HOM05D004314 ORTHO05D005627 5.1e-10 67.0 41 73.2
Aa31LG1G17530 Aethionema arabicum HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
AL8G41730 Arabidopsis lyrata HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
AT5G64370 Arabidopsis thaliana HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
AUR62027107 Chenopodium quinoa HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 73.2
Cc02_g20900 Coffea canephora HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
Nitab4.5_0000313g0120 Nicotiana tabacum HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
Sc08g0003970 Simmondsia chinensis HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
THA.LOC104818523 Tarenaya hassleriana HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 70.7
VMungo0251G2073 Vigna mungo HOM05D004314 ORTHO05D005627 6.7e-10 66.6 41 75.6
Ciclev10028599m.g Citrus clementina HOM05D004314 ORTHO05D005627 8.7e-10 66.2 38 73.7
COL.COLO4_32391 Corchorus olitorius HOM05D004314 ORTHO05D005627 8.7e-10 66.2 39 71.8
BcaC01g06912 Brassica carinata HOM05D004314 ORTHO05D005627 1.1e-09 65.9 41 70.7
C03p61910 Brassica napus HOM05D004314 ORTHO05D005627 1.1e-09 65.9 41 70.7
BolC3t18450H Brassica oleracea HOM05D004314 ORTHO05D005627 1.1e-09 65.9 41 70.7
ECA234G3638 Erigeron canadensis HOM05D004314 ORTHO05D005627 1.1e-09 65.9 41 70.7
MBI16_g27581_MAGBIO Magnolia biondii HOM05D004314 ORTHO05D005627 1.1e-09 65.9 40 67.5
BcaB04g19968 Brassica carinata HOM05D004314 ORTHO05D000740 1.5e-09 65.5 41 68.3
Cpa.g.sc20.4 Carica papaya HOM05D004314 ORTHO05D005627 1.5e-09 65.5 41 68.3
Migut.N01097 Erythranthe guttata HOM05D004314 ORTHO05D005627 1.5e-09 65.5 37 75.7
Gohir.D12G017200 Gossypium hirsutum HOM05D004314 ORTHO05D005627 1.5e-09 65.5 41 70.7
Pp3c3_36650 Physcomitrium patens HOM05D004314 ORTHO05D005627 1.5e-09 65.5 41 70.7
Potri.007G115900 Populus trichocarpa HOM05D004314 ORTHO05D005627 1.5e-09 65.5 41 68.3
GSVIVG01015663001 Vitis vinifera HOM05D004314 ORTHO05D005627 1.5e-09 65.5 41 70.7
Eucgr.G00862 Eucalyptus grandis HOM05D004314 ORTHO05D005627 1.9e-09 65.1 41 70.7
Gohir.D06G146450 Gossypium hirsutum HOM05D004314 ORTHO05D047323 1.9e-09 65.1 41 70.7
Hma1.2p1_1093F.1_g256240 Hydrangea macrophylla HOM05D004314 ORTHO05D005627 1.9e-09 65.1 41 73.2
PGR142G0142 Punica granatum HOM05D004314 ORTHO05D005627 1.9e-09 65.1 41 70.7
Sed0001289 Sechium edule HOM05D004314 ORTHO05D005627 1.9e-09 65.1 41 70.7
HanXRQChr10g0297771 Helianthus annuus HOM05D004314 ORTHO05D005627 2.5e-09 64.7 41 68.3
Lsat_1_v5_gn_5_110080 Lactuca sativa HOM05D004314 ORTHO05D005627 2.5e-09 64.7 41 68.3
Lj5C229G21 Lonicera japonica HOM05D004314 ORTHO05D005627 2.5e-09 64.7 41 70.7
Rhsim11G0142100 Rhododendron simsii HOM05D004314 ORTHO05D005627 2.5e-09 64.7 41 70.7
ATR0767G162 Amborella trichopoda HOM05D004314 ORTHO05D005627 3.3e-09 64.3 41 68.3
Mapoly0006s0006 Marchantia polymorpha HOM05D004314 ORTHO05D005627 3.3e-09 64.3 41 68.3
Hund00381 Selenicereus undatus HOM05D004314 ORTHO05D005627 3.3e-09 64.3 41 70.7
Ah.01g023920 Amaranthus hybridus HOM05D004314 ORTHO05D005627 4.3e-09 63.9 41 70.7
MELO3C018607.2 Cucumis melo HOM05D004314 ORTHO05D005627 4.3e-09 63.9 41 68.3
CsaV3_7G006870 Cucumis sativus L. HOM05D004314 ORTHO05D005627 4.3e-09 63.9 41 68.3
ClCG09G016090 Citrullus lanatus HOM05D004314 ORTHO05D005627 5.7e-09 63.5 41 65.9
AUR62012883 Chenopodium quinoa HOM05D004314 ORTHO05D005627 7.4e-09 63.2 41 68.3
Gorai.011G177000 Gossypium raimondii HOM05D004314 ORTHO05D047323 7.4e-09 63.2 41 68.3
EL10Ac9g22069 Beta vulgaris HOM05D004314 ORTHO05D005627 1.3e-08 62.4 41 65.9
BcaC01g06917 Brassica carinata HOM05D004314 ORTHO05D005627 1.3e-08 62.4 36 75.0
Nitab4.5_0008998g0030 Nicotiana tabacum HOM05D004314 ORTHO05D005627 1.3e-08 62.4 41 65.9
CBR_g26363 Chara braunii HOM05D004314 ORTHO05D005627 2.2e-08 61.6 41 65.9
Gorai.003G106500 Gossypium raimondii HOM05D004314 ORTHO05D005627 3.7e-08 60.8 41 65.9
SMO356G0581 Selaginella moellendorffii HOM05D004314 ORTHO05D005627 6.3e-08 60.1 41 68.3
CAN.G1223.1 Capsicum annuum HOM05D004314 ORTHO05D005627 8.2e-08 59.7 37 70.3
Cre01.g022650 Chlamydomonas reinhardtii HOM05D004314 ORTHO05D005627 1.1e-07 59.3 41 61.0
AagrBONN_evm.TU.Sc2ySwM_344.1110 Anthoceros agrestis HOM05D004314 ORTHO05D005627 2.4e-07 58.2 41 63.4
PRCOL_00005583 Prasinoderma coloniale HOM05D004314 ORTHO05D005627 2.4e-07 58.2 41 58.5
CiPaw.05G029300 Carya illinoinensis HOM05D004314 ORTHO05D005627 3.1e-07 57.8 41 61.0
Gohir.D03G101100 Gossypium hirsutum HOM05D004314 ORTHO05D005627 2.0e-06 55.1 41 63.4
Gorai.006G064500 Gossypium raimondii HOM05D004314 ORTHO05D025709 2.6e-06 54.7 32 75.0
MCO09G090 Micromonas commoda HOM05D004314 ORTHO05D005627 2.6e-06 54.7 41 58.5
Gorai.013G168600 Gossypium raimondii HOM05D004314 ORTHO05D025709 7.7e-06 53.1 32 71.9
vmacro01862 Vaccinium macrocarpon HOM05D004314 ORTHO05D005627 7.7e-06 53.1 40 62.5
Gohir.D10G130350 Gossypium hirsutum HOM05D004314 ORTHO05D025709 1.0e-05 52.8 32 71.9
Gorai.011G144100 Gossypium raimondii HOM05D004314 ORTHO05D025709 1.0e-05 52.8 32 71.9


User provided reference genes

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