Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Medtr6g033325 Medicago truncatula HOM05D006489 ORTHO05D007556 3.8e-312 1073.5 558 100.0
TPR.G36685 Trifolium pratense HOM05D006489 ORTHO05D007556 6.2e-196 688.0 567 69.5
Psat1g097920 Pisum sativum HOM05D006489 ORTHO05D007556 6.9e-171 604.7 628 59.4
Medtr5g092580 Medicago truncatula HOM05D006489 ORTHO05D007556 6.8e-142 508.4 615 54.8
Ca_06317_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 8.3e-132 474.9 610 53.4
TPR.G1166 Trifolium pratense HOM05D006489 ORTHO05D007556 5.9e-130 468.8 612 51.6
Ca_25386_v3 Cicer arietinum L. HOM05D006489 ORTHO05D007556 1.5e-117 427.6 598 50.5
Psat2g011040 Pisum sativum HOM05D006489 ORTHO05D007556 1.1e-99 368.2 615 44.9
Lalb_Chr17g0348451 Lupinus albus HOM05D006489 ORTHO05D007556 1.4e-99 367.9 636 44.7
LjContig00272g0011286 Lotus japonicus HOM05D006489 ORTHO05D007556 2.7e-98 363.6 623 44.3
Phvul.008G267300 Phaseolus vulgaris HOM05D006489 ORTHO05D007556 8.6e-97 358.6 615 43.7
VMungo0647G1504 Vigna mungo HOM05D006489 ORTHO05D007556 1.9e-96 357.5 610 44.8
Glyma.02G290600 Glycine max HOM05D006489 ORTHO05D007556 1.3e-92 344.7 615 44.6
Lalb_Chr10g0106941 Lupinus albus HOM05D006489 ORTHO05D007556 3.3e-80 303.5 618 38.5
arahy.Tifrunner.gnm1.ann1.I0Q6ZZ Arachis hypogaea HOM05D006489 ORTHO05D007556 1.6e-71 274.6 670 35.5
Glyma.14G024100 Glycine max HOM05D006489 ORTHO05D007556 1.0e-68 265.4 482 42.7
arahy.Tifrunner.gnm1.ann1.X6VDEX Arachis hypogaea HOM05D006489 ORTHO05D007556 2.2e-68 264.2 672 35.0
Haze_09673 Corylus avellana HOM05D006489 ORTHO05D007556 6.7e-65 252.7 629 36.4
Ciclev10008166m.g Citrus clementina HOM05D006489 ORTHO05D007556 4.3e-64 250.0 611 34.0
QL08p010454 Quercus lobata HOM05D006489 ORTHO05D007556 1.4e-62 245.0 612 34.5
Duzib213G0414 Durio zibethinus HOM05D006489 ORTHO05D007556 7.4e-56 222.6 579 34.0
Cfa020351 Carpinus fangiana HOM05D006489 ORTHO05D007556 1.6e-55 221.5 665 33.7
CiPaw.12G129400 Carya illinoinensis HOM05D006489 ORTHO05D007556 1.8e-54 218.0 620 32.1
Cpa.g.sc97.9 Carica papaya HOM05D006489 ORTHO05D007556 5.0e-52 209.9 582 33.7
Prupe.4G212300 Prunus persica HOM05D006489 ORTHO05D007556 9.4e-51 205.7 620 32.4
COL.COLO4_19762 Corchorus olitorius HOM05D006489 ORTHO05D007556 2.1e-50 204.5 530 34.0
Actinidia35341 Actinidia chinensis HOM05D006489 ORTHO05D007556 6.1e-50 203.0 593 32.2
Sabra11G0125100 Salix brachista HOM05D006489 ORTHO05D007556 1.0e-49 202.2 601 32.6
Potri.011G139200 Populus trichocarpa HOM05D006489 ORTHO05D007556 6.7e-49 199.5 602 32.4
Gorai.004G027700 Gossypium raimondii HOM05D006489 ORTHO05D007556 1.1e-48 198.7 593 32.9
Dinv22265 Davidia involucrata HOM05D006489 ORTHO05D007556 5.7e-48 196.4 584 32.4
TAR627G0165 Trochodendron aralioides HOM05D006489 ORTHO05D007556 9.7e-48 195.7 600 32.3
Lsat_1_v5_gn_9_94040 Lactuca sativa HOM05D006489 ORTHO05D007556 2.8e-47 194.1 582 33.0
Gohir.D08G030200 Gossypium hirsutum HOM05D006489 ORTHO05D007556 6.3e-47 193.0 593 32.5
Peaxi162Scf00964g00023 Petunia axillaris HOM05D006489 ORTHO05D007556 6.3e-47 193.0 586 34.8
Atru.chr2.3342 Acer truncatum HOM05D006489 ORTHO05D007556 8.2e-47 192.6 327 39.8
vmacro09717 Vaccinium macrocarpon HOM05D006489 ORTHO05D007556 1.2e-45 188.7 593 32.2
A04p10340 Brassica napus HOM05D006489 ORTHO05D007556 2.6e-45 187.6 595 31.1
BcaC02g09533 Brassica carinata HOM05D006489 ORTHO05D007556 1.0e-44 185.7 611 31.9
BolC4t25966H Brassica oleracea HOM05D006489 ORTHO05D007556 1.0e-44 185.7 611 31.9
TWI15G0832 Tripterygium wilfordii HOM05D006489 ORTHO05D007556 3.8e-44 183.7 594 30.6
C04p43850 Brassica napus HOM05D006489 ORTHO05D007556 5.0e-44 183.3 594 31.1
Hma1.2p1_1162F.1_g262610 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 5.0e-44 183.3 597 33.5
Manes.03G129000 Manihot esculenta HOM05D006489 ORTHO05D007556 6.5e-44 183.0 593 32.9
Gohir.A08G019600 Gossypium hirsutum HOM05D006489 ORTHO05D007556 1.2e-42 178.7 591 32.0
DCAR_022559 Daucus carota HOM05D006489 ORTHO05D007556 4.7e-42 176.8 603 33.0
Oeu062694.1 Olea europaea HOM05D006489 ORTHO05D007556 6.1e-42 176.4 328 38.4
MBI02_g07154_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 1.0e-41 175.6 571 31.2
HanXRQChr03g0076541 Helianthus annuus HOM05D006489 ORTHO05D007556 5.1e-41 173.3 593 30.4
BcaB06g27045 Brassica carinata HOM05D006489 ORTHO05D007556 1.1e-40 172.2 570 30.0
Cc09_g09720 Coffea canephora HOM05D006489 ORTHO05D007556 1.1e-40 172.2 597 31.3
BraA04t16706Z Brassica rapa HOM05D006489 ORTHO05D007556 1.5e-40 171.8 568 29.6
MD03G1201600 Malus domestica HOM05D006489 ORTHO05D007556 1.5e-40 171.8 649 29.0
ECA240G0124 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.6e-40 171.0 597 32.0
RhsimUnG0250900 Rhododendron simsii HOM05D006489 ORTHO05D007556 3.3e-40 170.6 338 37.6
CSS0036232 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 5.7e-40 169.9 527 33.2
FAN25G3282 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.7e-39 168.3 505 32.1
Carub.0003s2045 Capsella rubella HOM05D006489 ORTHO05D007556 3.7e-39 167.2 567 30.5
CSS0017234 Camellia sinensis var. sinensis HOM05D006489 ORTHO05D007556 8.2e-39 166.0 527 32.8
AL3G34270 Arabidopsis lyrata HOM05D006489 ORTHO05D007556 1.8e-38 164.9 589 31.4
MELO3C013233.2 Cucumis melo HOM05D006489 ORTHO05D007556 1.8e-38 164.9 605 29.6
AT3G20490 Arabidopsis thaliana HOM05D006489 ORTHO05D007556 3.1e-38 164.1 583 30.4
RcHm_v2.0_Chr5g0039401 Rosa chinensis HOM05D006489 ORTHO05D007556 5.3e-38 163.3 538 30.3
Solyc07g064570.3 Solanum lycopersicum HOM05D006489 ORTHO05D007556 7.0e-38 162.9 601 32.4
CDE02G1695 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 9.1e-38 162.5 584 30.1
FAN21G0022 Fragaria x ananassa HOM05D006489 ORTHO05D007556 9.1e-38 162.5 533 30.8
CARHR096250 Cardamine hirsuta HOM05D006489 ORTHO05D007556 1.2e-37 162.2 589 31.4
PGSC0003DMG400022321 Solanum tuberosum HOM05D006489 ORTHO05D007556 1.2e-37 162.2 599 33.1
MBI18_g45561_MAGBIO Magnolia biondii HOM05D006489 ORTHO05D007556 2.6e-37 161.0 609 30.9
AUR62015766 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.5e-37 160.2 605 28.3
Atru.BG.151.p Acer truncatum HOM05D006489 ORTHO05D007556 5.9e-37 159.8 308 37.3
THA.LOC104817868 Tarenaya hassleriana HOM05D006489 ORTHO05D007556 7.7e-37 159.5 575 29.6
Aa31LG8G7280 Aethionema arabicum HOM05D006489 ORTHO05D007556 1.0e-36 159.1 583 29.8
CANSAT11G2482 Cannabis sativa HOM05D006489 ORTHO05D007556 1.0e-36 159.1 656 28.2
Sc03g0008610 Simmondsia chinensis HOM05D006489 ORTHO05D007556 1.0e-36 159.1 321 37.7
FvH4_3g22630 Fragaria vesca HOM05D006489 ORTHO05D007556 1.3e-36 158.7 536 30.8
Aqoxy1G03602 Aquilegia oxysepala HOM05D006489 ORTHO05D007556 2.2e-36 157.9 633 29.7
Sed0018772 Sechium edule HOM05D006489 ORTHO05D007556 2.2e-36 157.9 615 31.2
Sopen07g032750 Solanum pennellii HOM05D006489 ORTHO05D007556 3.8e-36 157.1 603 31.8
CDE05G3553 Ceratophyllum demersum HOM05D006489 ORTHO05D007556 5.0e-36 156.8 603 28.5
EL10Ac4g07823 Beta vulgaris HOM05D006489 ORTHO05D007556 2.5e-35 154.5 609 29.2
ClCG05G014300 Citrullus lanatus HOM05D006489 ORTHO05D007556 4.2e-35 153.7 609 29.6
SGA_v2.0_scaffold80G25948 Striga asiatica HOM05D006489 ORTHO05D007556 5.5e-35 153.3 407 34.9
HanXRQChr08g0220561 Helianthus annuus HOM05D006489 ORTHO05D007556 7.2e-35 152.9 587 30.8
Nitab4.5_0011175g0010 Nicotiana tabacum HOM05D006489 ORTHO05D007556 9.4e-35 152.5 533 32.3
Eucgr.F00766 Eucalyptus grandis HOM05D006489 ORTHO05D007556 1.2e-34 152.1 340 33.5
Nitab4.5_0001913g0140 Nicotiana tabacum HOM05D006489 ORTHO05D007556 4.7e-34 150.2 524 32.6
Migut.M01768 Erythranthe guttata HOM05D006489 ORTHO05D007556 6.1e-34 149.8 329 37.4
CAN.G337.129 Capsicum annuum HOM05D006489 ORTHO05D007556 1.8e-33 148.3 574 31.5
PGR083G1541 Punica granatum HOM05D006489 ORTHO05D007556 2.3e-33 147.9 567 31.2
ATR0752G219 Amborella trichopoda HOM05D006489 ORTHO05D007556 5.2e-33 146.7 541 29.2
GSVIVG01037644001 Vitis vinifera HOM05D006489 ORTHO05D007556 5.2e-33 146.7 319 37.0
Hund23251 Selenicereus undatus HOM05D006489 ORTHO05D007556 6.7e-33 146.4 314 35.4
Hma1.2p1_1162F.1_g262600 Hydrangea macrophylla HOM05D006489 ORTHO05D007556 3.3e-32 144.1 534 31.1
Thecc.07G037900 Theobroma cacao HOM05D006489 ORTHO05D007556 9.7e-32 142.5 451 31.7
Lj1A872T56 Lonicera japonica HOM05D006489 ORTHO05D007556 2.2e-31 141.4 298 37.6
HPP92_013323 Vanilla planifolia HOM05D006489 ORTHO05D007556 8.2e-31 139.4 370 32.2
Sed0021471 Sechium edule HOM05D006489 ORTHO05D007556 3.1e-30 137.5 359 32.0
Sp7g05570 Schrenkiella parvula HOM05D006489 ORTHO05D007556 4.1e-30 137.1 638 28.8
Nn1g03547 Nelumbo nucifera HOM05D006489 ORTHO05D007556 4.5e-29 133.7 561 28.2
PSO675G7358 Papaver somniferum HOM05D006489 ORTHO05D007556 1.5e-27 128.6 336 31.8
CsaV3_7G021220 Cucumis sativus L. HOM05D006489 ORTHO05D007556 3.2e-27 127.5 574 28.9
Psat0s2568g0040 Pisum sativum HOM05D006489 ORTHO05D007556 8.0e-26 122.9 93 69.9
AUR62020449 Chenopodium quinoa HOM05D006489 ORTHO05D007556 4.0e-25 120.6 556 26.3
FAN16G1490 Fragaria x ananassa HOM05D006489 ORTHO05D007556 1.7e-23 115.2 240 37.9
Lsat_1_v5_gn_7_108561 Lactuca sativa HOM05D006489 ORTHO05D007556 2.0e-21 108.2 317 32.8
HanXRQChr11g0337701 Helianthus annuus HOM05D006489 ORTHO05D007556 1.0e-20 105.9 213 35.7
Thhalv10028177m.g Eutrema salsugineum HOM05D006489 ORTHO05D007556 1.3e-20 105.5 551 26.3
SEGI_05401 Sequoiadendron giganteum HOM05D006489 ORTHO05D007556 2.5e-19 101.3 586 27.1
Zm00001eb431300 Zea mays HOM05D006489 ORTHO05D007556 5.5e-19 100.1 324 29.6
unitig_62.g23281 Utricularia gibba HOM05D008272 ORTHO05D010429 1.6e-18 98.6 540 27.2
ECA236G1547 Erigeron canadensis HOM05D006489 ORTHO05D007556 2.7e-18 97.8 217 35.0
PSO541G0970 Papaver somniferum HOM05D006489 ORTHO05D007556 4.7e-18 97.1 293 30.4
Os04g0625100 Oryza sativa ssp. japonica HOM05D006489 ORTHO05D007556 1.2e-16 92.4 348 28.7
Lj8A169G92 Lonicera japonica HOM05D006489 ORTHO05D007556 1.2e-10 72.4 66 54.5
Actinidia10733 Actinidia chinensis HOM05D006489 ORTHO05D007556 8.0e-10 69.7 222 31.5


User provided reference genes

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